Wall clock time and date at job start Tue Mar 31 2020 18:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47274 * 2 1 4 4 C 1.46900 * 111.00111 * 164.48184 * 3 2 1 5 5 C 1.53004 * 109.46835 * 293.95786 * 4 3 2 6 6 C 1.46901 * 111.00615 * 288.43734 * 3 2 1 7 7 C 1.50695 * 109.47229 * 164.16673 * 6 3 2 8 8 C 1.38370 * 119.84638 * 275.57970 * 7 6 3 9 9 C 1.37951 * 120.15398 * 179.72675 * 8 7 6 10 10 C 1.39627 * 119.83891 * 0.56654 * 9 8 7 11 11 C 1.47732 * 120.14631 * 179.68408 * 10 9 8 12 12 O 1.21470 * 119.99723 * 180.02562 * 11 10 9 13 13 O 1.34704 * 119.99885 * 0.02562 * 11 10 9 14 14 C 1.45204 * 116.99974 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47235 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00130 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00428 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00378 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99887 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00069 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00200 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47493 * 89.99681 * 22 20 18 24 24 H 1.48500 * 109.46996 * 210.00096 * 22 20 18 25 25 H 1.48507 * 109.46685 * 329.99478 * 22 20 18 26 26 C 1.39629 * 119.70502 * 359.70646 * 10 9 8 27 27 C 1.37940 * 119.84799 * 0.02562 * 26 10 9 28 28 H 1.09001 * 109.47093 * 66.05771 * 1 2 3 29 29 H 1.08995 * 109.47102 * 186.06472 * 1 2 3 30 30 H 1.09001 * 109.46854 * 306.06359 * 1 2 3 31 31 H 1.09006 * 109.47055 * 240.00870 * 2 1 3 32 32 H 1.08996 * 109.47413 * 120.00506 * 2 1 3 33 33 H 1.09001 * 109.47164 * 53.95077 * 4 3 2 34 34 H 1.08997 * 109.47390 * 173.95909 * 4 3 2 35 35 H 1.08995 * 109.47334 * 299.99620 * 5 4 3 36 36 H 1.09005 * 109.47428 * 60.00378 * 5 4 3 37 37 H 1.09011 * 109.46892 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46761 * 284.16823 * 6 3 2 39 39 H 1.09002 * 109.46876 * 44.16280 * 6 3 2 40 40 H 1.08000 * 119.92676 * 359.97438 * 8 7 6 41 41 H 1.07995 * 120.08069 * 180.27372 * 9 8 7 42 42 H 1.08993 * 109.47004 * 300.00028 * 14 13 11 43 43 H 1.09004 * 109.47051 * 59.99984 * 14 13 11 44 44 H 0.96998 * 119.99641 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00601 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.07792 * 179.97438 * 26 10 9 47 47 H 1.08003 * 119.92509 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4410 1.4408 0.3669 5 6 3.6103 0.9947 1.8207 6 6 1.7863 2.0260 -1.3010 7 6 1.9313 3.5192 -1.1585 8 6 0.8571 4.2773 -0.7272 9 6 0.9844 5.6439 -0.5891 10 6 2.1973 6.2633 -0.8969 11 6 2.3391 7.7272 -0.7582 12 8 3.3954 8.2633 -1.0272 13 8 1.2970 8.4675 -0.3333 14 6 1.5084 9.8996 -0.2200 15 6 0.2427 10.5573 0.2662 16 8 -0.7406 9.8852 0.4954 17 7 0.2034 11.8924 0.4466 18 6 -0.9482 12.4908 0.8885 19 1 -1.8238 11.8923 1.0925 20 6 -0.9886 13.8672 1.0749 21 7 -2.0922 14.4407 1.4990 22 14 0.5261 14.9022 0.7227 23 1 0.5055 15.3435 -0.6950 24 1 0.5302 16.0919 1.6115 25 1 1.7468 14.0940 0.9720 26 6 3.2755 5.4929 -1.3370 27 6 3.1360 4.1266 -1.4653 28 1 -0.3633 0.4170 -0.9392 29 1 -0.3633 -1.0219 0.1086 30 1 -0.3633 0.6050 0.8307 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.0109 0.7786 -0.2849 34 1 3.8052 2.4621 0.2555 35 1 3.0406 1.6568 2.4726 36 1 3.2462 -0.0266 1.9322 37 1 4.6651 1.0357 2.0928 38 1 2.5147 1.6575 -2.0234 39 1 0.7800 1.7900 -1.6470 40 1 -0.0821 3.7975 -0.4943 41 1 0.1466 6.2339 -0.2481 42 1 2.3134 10.0931 0.4888 43 1 1.7776 10.3054 -1.1953 44 1 0.9896 12.4299 0.2630 45 1 -2.1204 15.4015 1.6295 46 1 4.2163 5.9658 -1.5772 47 1 3.9693 3.5295 -1.8052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801427675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:06 Heat of formation + Delta-G solvation = -108.697752 kcal Electronic energy + Delta-G solvation = -27549.960476 eV Core-core repulsion = 23504.219165 eV Total energy + Delta-G solvation = -4045.741311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80619 -40.56020 -40.03945 -38.55417 -37.50912 -36.10048 -33.88799 -33.55512 -32.73135 -32.00873 -30.62426 -29.78256 -27.15063 -26.26970 -24.09045 -23.93582 -23.47756 -21.88303 -21.56374 -21.16032 -20.54335 -19.24683 -18.19331 -17.76026 -17.57691 -17.15386 -16.79950 -16.47823 -16.35498 -15.84831 -15.77813 -15.58961 -15.43828 -14.97521 -14.81796 -14.58859 -14.47359 -14.21129 -14.18851 -13.81549 -13.61454 -13.47566 -13.05208 -13.00760 -12.79150 -12.70035 -12.47230 -12.42597 -12.28081 -12.06560 -12.01388 -11.91475 -11.80109 -11.71828 -11.60296 -11.43592 -10.63123 -10.35538 -9.99670 -9.93690 -9.23912 -8.47079 -6.10319 -0.41341 0.37519 1.27137 1.31929 1.32628 1.38500 1.44398 1.73679 2.19310 2.63646 2.77736 3.07003 3.13147 3.53988 3.76117 3.78192 3.91532 3.97347 4.06460 4.07410 4.10887 4.17674 4.28586 4.33152 4.37179 4.49617 4.61820 4.64288 4.67510 4.75014 4.81465 4.89337 5.02130 5.04927 5.09164 5.15690 5.17214 5.29511 5.32853 5.36839 5.43778 5.46407 5.52403 5.83737 5.83978 6.13774 6.19075 6.43767 6.57046 6.75682 7.23849 7.75435 8.69436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.001928 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.961017 B =14519.169028 C =15119.216297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.547 5.547 4 C 0.045 3.955 5 C -0.148 4.148 6 C 0.089 3.911 7 C -0.035 4.035 8 C -0.111 4.111 9 C -0.069 4.069 10 C -0.145 4.145 11 C 0.507 3.493 12 O -0.528 6.528 13 O -0.341 6.341 14 C 0.067 3.933 15 C 0.449 3.551 16 O -0.607 6.607 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.061 0.939 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.961 3.039 23 H -0.254 1.254 24 H -0.271 1.271 25 H -0.232 1.232 26 C -0.055 4.055 27 C -0.121 4.121 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.393 0.607 45 H 0.282 0.718 46 H 0.142 0.858 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.098 -29.084 -7.012 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.272 5.272 4 C -0.083 4.083 5 C -0.205 4.205 6 C -0.038 4.038 7 C -0.036 4.036 8 C -0.130 4.130 9 C -0.087 4.087 10 C -0.146 4.146 11 C 0.353 3.647 12 O -0.420 6.420 13 O -0.256 6.256 14 C -0.010 4.010 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.217 5.217 18 C -0.462 4.462 19 H 0.079 0.921 20 C -0.208 4.208 21 N -0.564 5.564 22 Si 0.781 3.219 23 H -0.179 1.179 24 H -0.196 1.196 25 H -0.156 1.156 26 C -0.073 4.073 27 C -0.139 4.139 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.229 0.771 45 H 0.092 0.908 46 H 0.160 0.840 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.342 -28.922 -6.505 33.379 hybrid contribution 0.576 1.047 -0.391 1.257 sum 15.917 -27.875 -6.897 32.832 Atomic orbital electron populations 1.21797 0.94649 1.02086 1.02066 1.22180 0.96317 0.87920 1.01534 1.62020 1.18321 1.17913 1.28942 1.22176 0.87634 1.01537 0.96916 1.21799 1.01766 1.01371 0.95576 1.21167 1.03415 0.88594 0.90613 1.20263 0.92922 0.96251 0.94162 1.21162 1.00279 0.92190 0.99333 1.21581 0.96124 0.95944 0.95071 1.19142 0.97677 0.87823 1.09963 1.21745 0.80874 0.89200 0.72841 1.90779 1.28853 1.74103 1.48225 1.86601 1.40676 1.20606 1.77694 1.22635 0.95939 0.77524 1.04871 1.20125 0.89941 0.82634 0.83731 1.90578 1.38648 1.63831 1.56141 1.41799 1.13397 1.06009 1.60469 1.19003 0.91175 0.92135 1.43897 0.92086 1.26098 1.01619 0.97323 0.95761 1.69777 1.29242 1.12331 1.45031 0.85416 0.78071 0.78680 0.79754 1.17866 1.19579 1.15559 1.21333 0.97335 0.94080 0.94563 1.21246 0.98182 0.93349 1.01093 0.92594 0.91315 0.92867 0.93986 0.90054 0.93824 0.90965 0.93303 0.92071 0.91494 0.91995 0.88505 0.83824 0.85582 0.86585 0.86425 0.77076 0.90782 0.84007 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.86 71.98 0.71 -0.70 16 2 C 0.05 0.45 5.56 86.30 0.48 0.93 16 3 N -0.55 -6.66 4.41 -900.80 -3.97 -10.63 16 4 C 0.04 0.50 5.51 86.30 0.48 0.98 16 5 C -0.15 -1.64 9.88 71.98 0.71 -0.93 16 6 C 0.09 0.99 4.95 85.56 0.42 1.41 16 7 C -0.04 -0.55 4.93 -19.80 -0.10 -0.65 16 8 C -0.11 -2.16 9.70 22.23 0.22 -1.94 16 9 C -0.07 -1.74 9.62 22.54 0.22 -1.52 16 10 C -0.14 -3.86 5.87 -20.10 -0.12 -3.97 16 11 C 0.51 16.43 7.90 70.33 0.56 16.99 16 12 O -0.53 -17.90 16.14 19.93 0.32 -17.58 16 13 O -0.34 -12.68 9.01 -49.75 -0.45 -13.13 16 14 C 0.07 2.39 5.95 71.23 0.42 2.82 16 15 C 0.45 21.29 7.86 87.66 0.69 21.97 16 16 O -0.61 -35.12 16.08 15.71 0.25 -34.86 16 17 N -0.57 -27.53 5.09 -306.99 -1.56 -29.09 16 18 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 19 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 20 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 21 N -0.92 -54.95 13.96 21.66 0.30 -54.65 16 22 Si 0.96 38.33 27.74 68.60 1.90 40.23 16 23 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 26 C -0.05 -1.13 9.60 22.54 0.22 -0.91 16 27 C -0.12 -1.82 8.26 22.23 0.18 -1.63 16 28 H 0.06 0.51 6.74 -2.39 -0.02 0.49 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.34 8.06 -2.38 -0.02 0.32 16 32 H 0.08 0.74 5.95 -2.39 -0.01 0.72 16 33 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 34 H 0.07 0.92 6.15 -2.39 -0.01 0.91 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.59 6.29 -2.38 -0.01 0.57 16 37 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.06 0.52 7.95 -2.39 -0.02 0.50 16 39 H 0.10 0.96 6.34 -2.39 -0.02 0.95 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.13 3.61 7.61 -2.91 -0.02 3.59 16 42 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 45 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.14 2.73 7.65 -2.91 -0.02 2.70 16 47 H 0.16 1.42 8.04 -2.91 -0.02 1.40 16 Total: -1.00 -77.22 391.51 3.60 -73.63 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.40 Total: 31.86 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.41 Total: 14.23 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -5.23 Total: -94.37 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: 0.13 Total: -65.57 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -77.22 3.60 -73.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801427675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.071 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds