Wall clock time and date at job start Tue Mar 31 2020 17:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46780 * 2 1 4 4 C 1.52992 * 109.47552 * 240.00094 * 2 1 3 5 5 N 1.46493 * 109.47369 * 179.97438 * 4 2 1 6 6 C 1.34781 * 120.00146 * 179.97438 * 5 4 2 7 7 O 1.21553 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.00008 * 179.97438 * 6 5 4 9 9 C 1.40021 * 120.55812 * 180.27557 * 8 6 5 10 10 C 1.38356 * 118.28930 * 180.26824 * 9 8 6 11 11 C 1.38352 * 119.30108 * 359.45848 * 10 9 8 12 12 N 1.31932 * 121.08143 * 0.27994 * 11 10 9 13 13 C 1.31691 * 121.87487 * 0.02562 * 12 11 10 14 14 O 1.45197 * 109.46978 * 119.99491 * 2 1 3 15 15 C 1.34229 * 117.00590 * 270.00174 * 14 2 1 16 16 O 1.20832 * 119.99829 * 0.02562 * 15 14 2 17 17 C 1.50698 * 120.00179 * 180.02562 * 15 14 2 18 18 C 1.53003 * 109.47108 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47203 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47203 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47108 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00363 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00129 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99750 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00217 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47384 * 59.99948 * 25 23 21 27 27 H 1.48501 * 109.47103 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47138 * 299.99655 * 25 23 21 29 29 H 1.08991 * 109.47304 * 299.99692 * 1 2 3 30 30 H 1.09000 * 109.46671 * 60.00427 * 1 2 3 31 31 H 1.09000 * 109.46404 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47073 * 59.99451 * 4 2 1 33 33 H 1.09005 * 109.47001 * 299.99771 * 4 2 1 34 34 H 0.96999 * 120.00497 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.85991 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.35338 * 179.74185 * 10 9 8 37 37 H 1.08003 * 119.46505 * 180.25792 * 11 10 9 38 38 H 1.08005 * 119.71404 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47306 * 300.00232 * 17 15 14 40 40 H 1.08999 * 109.46964 * 60.00349 * 17 15 14 41 41 H 1.09001 * 109.46902 * 300.00082 * 18 17 15 42 42 H 1.09001 * 109.47336 * 59.99597 * 18 17 15 43 43 H 1.09001 * 109.46964 * 299.99683 * 19 18 17 44 44 H 1.09001 * 109.47598 * 59.99397 * 19 18 17 45 45 H 1.09001 * 109.46902 * 299.99722 * 20 19 18 46 46 H 1.08999 * 109.47248 * 59.99765 * 20 19 18 47 47 H 0.97004 * 120.00455 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5051 -0.7206 -1.2494 6 6 4.1790 -1.3046 -2.2600 7 8 3.5714 -1.8313 -3.1715 8 6 5.6575 -1.3035 -2.2606 9 6 6.3694 -1.9016 -3.3074 10 6 7.7519 -1.8784 -3.2576 11 6 8.3807 -1.2609 -2.1910 12 7 7.6837 -0.7004 -1.2211 13 6 6.3668 -0.7019 -1.2206 14 8 2.0140 -0.6844 1.1856 15 6 2.2171 0.0641 2.2812 16 8 1.9973 1.2519 2.2507 17 6 2.7193 -0.5769 3.5492 18 6 2.8631 0.4891 4.6373 19 6 3.3736 -0.1615 5.9245 20 6 3.5180 0.9046 7.0123 21 6 4.0202 0.2636 8.2804 22 1 4.2163 -0.7981 8.3078 23 6 4.2293 1.0325 9.4056 24 7 3.9911 2.3255 9.3720 25 14 4.8524 0.2381 10.9771 26 1 6.1727 -0.3927 10.7232 27 1 4.9925 1.2729 12.0330 28 1 3.8868 -0.7975 11.4248 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 1.6768 -1.7489 -1.2491 34 1 3.9901 -0.3000 -0.5223 35 1 5.8528 -2.3726 -4.1307 36 1 8.3342 -2.3334 -4.0452 37 1 9.4597 -1.2375 -2.1516 38 1 5.8312 -0.2322 -0.4088 39 1 2.0105 -1.3372 3.8774 40 1 3.6884 -1.0398 3.3632 41 1 3.5718 1.2497 4.3093 42 1 1.8938 0.9518 4.8231 43 1 2.6653 -0.9223 6.2526 44 1 4.3429 -0.6239 5.7383 45 1 4.2266 1.6651 6.6839 46 1 2.5489 1.3673 7.1986 47 1 4.1385 2.8666 10.1635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805898124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:20 Heat of formation + Delta-G solvation = -113.300104 kcal Electronic energy + Delta-G solvation = -27308.413782 eV Core-core repulsion = 23262.472898 eV Total energy + Delta-G solvation = -4045.940884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11971 -40.68572 -39.39276 -37.33197 -35.28765 -35.01470 -33.08026 -32.89888 -32.60368 -31.57735 -29.88860 -27.19478 -26.03846 -24.65692 -23.95716 -23.26677 -21.79921 -21.16319 -20.56160 -20.07033 -18.67955 -17.83892 -17.34890 -17.15050 -16.49521 -16.25615 -16.18463 -15.84791 -15.64869 -15.26749 -14.74616 -14.46936 -14.39356 -14.16826 -13.82838 -13.64250 -13.41326 -13.19766 -12.96239 -12.71535 -12.68930 -12.42795 -12.32291 -11.80743 -11.68655 -11.37372 -11.03397 -11.01135 -10.68892 -10.62527 -10.60258 -10.49331 -10.44058 -10.43303 -9.91087 -9.80400 -9.67802 -9.54710 -9.30912 -9.05120 -8.32789 -5.97713 -4.00401 0.13671 0.70653 2.16568 2.37665 2.44040 2.59500 3.34270 3.37236 3.38768 3.40971 3.77745 4.12588 4.19860 4.30135 4.36873 4.46891 4.47809 4.55379 4.57049 4.68499 4.88359 5.04529 5.06974 5.13723 5.20851 5.22548 5.37763 5.39568 5.41215 5.49024 5.56559 5.66528 5.72559 5.85186 6.00898 6.03429 6.14689 6.29082 6.42902 6.72777 6.90799 6.91643 7.13330 7.35988 7.65633 7.69460 7.70510 7.84646 8.02640 8.44367 9.06843 9.63439 11.13533 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002074 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.935723 B =13499.832467 C =15643.624042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.093 0.907 4 C 0.126 3.874 5 N -0.721 5.721 6 C 0.567 3.433 7 O -0.535 6.535 8 C -0.190 4.190 9 C -0.016 4.016 10 C -0.180 4.180 11 C 0.124 3.876 12 N -0.484 5.484 13 C 0.138 3.862 14 O -0.356 6.356 15 C 0.458 3.542 16 O -0.501 6.501 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.110 4.110 20 C 0.020 3.980 21 C -0.522 4.522 22 H 0.054 0.946 23 C 0.055 3.945 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.403 0.597 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -8.293 -28.894 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.111 0.889 4 C 0.002 3.998 5 N -0.374 5.374 6 C 0.354 3.646 7 O -0.412 6.412 8 C -0.196 4.196 9 C -0.043 4.043 10 C -0.200 4.200 11 C -0.033 4.033 12 N -0.192 5.192 13 C -0.021 4.021 14 O -0.274 6.274 15 C 0.302 3.698 16 O -0.388 6.388 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.017 4.017 21 C -0.560 4.560 22 H 0.072 0.928 23 C -0.146 4.146 24 N -0.535 5.535 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.239 0.761 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.979 -7.732 -28.782 29.819 hybrid contribution 0.061 -0.425 0.565 0.709 sum 1.040 -8.157 -28.218 29.391 Atomic orbital electron populations 1.22117 0.92848 1.03665 1.03836 1.22947 0.95727 0.97549 0.82306 0.88878 1.21586 0.79371 1.02601 0.96205 1.45812 1.07501 1.58741 1.25308 1.18012 0.86652 0.78097 0.81880 1.90790 1.69692 1.44949 1.35792 1.20966 0.94170 1.05441 0.98974 1.21750 0.93864 0.92310 0.96328 1.22215 0.94933 1.02044 1.00802 1.23109 1.00954 0.90617 0.88593 1.67761 1.07906 1.17133 1.26391 1.23029 0.90309 0.93102 0.95619 1.86646 1.77330 1.42856 1.20525 1.24296 0.74101 0.86190 0.85259 1.90681 1.47488 1.16749 1.83866 1.21637 1.03344 1.01007 0.89028 1.21580 1.02687 0.96487 0.93820 1.21652 0.99403 0.99808 0.93920 1.19089 0.97172 0.93467 0.91933 1.21229 1.44130 0.94506 0.96127 0.92755 1.25039 0.95711 0.94854 0.98952 1.69959 1.49045 1.04984 1.29467 0.86661 0.79402 0.78943 0.82993 1.20249 1.21321 1.20274 0.91022 0.90350 0.91030 0.89019 0.89755 0.76128 0.83437 0.83803 0.81959 0.82490 0.87821 0.87850 0.91511 0.91550 0.93216 0.93177 0.96543 0.96576 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.55 37.16 0.35 -0.86 16 2 C 0.07 0.59 2.64 -26.73 -0.07 0.52 16 3 H 0.09 0.84 7.16 -51.93 -0.37 0.47 16 4 C 0.13 0.95 5.37 -4.05 -0.02 0.93 16 5 N -0.72 -5.84 5.41 -61.26 -0.33 -6.17 16 6 C 0.57 5.53 7.78 -12.33 -0.10 5.44 16 7 O -0.53 -6.73 16.42 5.32 0.09 -6.64 16 8 C -0.19 -1.63 5.89 -104.82 -0.62 -2.25 16 9 C -0.02 -0.12 9.72 -38.87 -0.38 -0.50 16 10 C -0.18 -1.02 10.10 -39.50 -0.40 -1.42 16 11 C 0.12 0.83 11.17 -17.47 -0.20 0.63 16 12 N -0.48 -4.47 10.35 -12.91 -0.13 -4.60 16 13 C 0.14 1.16 10.71 -17.13 -0.18 0.97 16 14 O -0.36 -3.66 9.64 -39.26 -0.38 -4.03 16 15 C 0.46 5.71 7.93 36.00 0.29 5.99 16 16 O -0.50 -7.68 15.20 -18.76 -0.29 -7.97 16 17 C -0.11 -1.37 5.81 -27.88 -0.16 -1.53 16 18 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 19 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 20 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 21 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 22 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 25 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 2.81 6.42 -40.82 -0.26 2.55 16 35 H 0.15 0.98 7.74 -52.48 -0.41 0.58 16 36 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.16 1.03 6.42 -52.48 -0.34 0.70 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -35.38 402.70 -8.80 -44.18 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.26 Total: -1.65 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.29 Total: -9.44 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.27 Total: -37.18 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.58 Total: -18.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.38 -8.80 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805898124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.118 kcal (2) G-P(sol) polarization free energy of solvation -35.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds