Wall clock time and date at job start Tue Mar 31 2020 17:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46780 * 2 1 4 4 C 1.52992 * 109.47552 * 240.00094 * 2 1 3 5 5 N 1.46493 * 109.47369 * 179.97438 * 4 2 1 6 6 C 1.34781 * 120.00146 * 179.97438 * 5 4 2 7 7 O 1.21553 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.00008 * 179.97438 * 6 5 4 9 9 C 1.40021 * 120.55812 * 180.27557 * 8 6 5 10 10 C 1.38356 * 118.28930 * 180.26824 * 9 8 6 11 11 C 1.38352 * 119.30108 * 359.45848 * 10 9 8 12 12 N 1.31932 * 121.08143 * 0.27994 * 11 10 9 13 13 C 1.31691 * 121.87487 * 0.02562 * 12 11 10 14 14 O 1.45197 * 109.46978 * 119.99491 * 2 1 3 15 15 C 1.34229 * 117.00590 * 270.00174 * 14 2 1 16 16 O 1.20832 * 119.99829 * 0.02562 * 15 14 2 17 17 C 1.50698 * 120.00179 * 180.02562 * 15 14 2 18 18 C 1.53003 * 109.47108 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47203 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47203 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47108 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00363 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00129 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99750 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00217 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47384 * 59.99948 * 25 23 21 27 27 H 1.48501 * 109.47103 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47138 * 299.99655 * 25 23 21 29 29 H 1.08991 * 109.47304 * 299.99692 * 1 2 3 30 30 H 1.09000 * 109.46671 * 60.00427 * 1 2 3 31 31 H 1.09000 * 109.46404 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47073 * 59.99451 * 4 2 1 33 33 H 1.09005 * 109.47001 * 299.99771 * 4 2 1 34 34 H 0.96999 * 120.00497 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.85991 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.35338 * 179.74185 * 10 9 8 37 37 H 1.08003 * 119.46505 * 180.25792 * 11 10 9 38 38 H 1.08005 * 119.71404 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47306 * 300.00232 * 17 15 14 40 40 H 1.08999 * 109.46964 * 60.00349 * 17 15 14 41 41 H 1.09001 * 109.46902 * 300.00082 * 18 17 15 42 42 H 1.09001 * 109.47336 * 59.99597 * 18 17 15 43 43 H 1.09001 * 109.46964 * 299.99683 * 19 18 17 44 44 H 1.09001 * 109.47598 * 59.99397 * 19 18 17 45 45 H 1.09001 * 109.46902 * 299.99722 * 20 19 18 46 46 H 1.08999 * 109.47248 * 59.99765 * 20 19 18 47 47 H 0.97004 * 120.00455 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5051 -0.7206 -1.2494 6 6 4.1790 -1.3046 -2.2600 7 8 3.5714 -1.8313 -3.1715 8 6 5.6575 -1.3035 -2.2606 9 6 6.3694 -1.9016 -3.3074 10 6 7.7519 -1.8784 -3.2576 11 6 8.3807 -1.2609 -2.1910 12 7 7.6837 -0.7004 -1.2211 13 6 6.3668 -0.7019 -1.2206 14 8 2.0140 -0.6844 1.1856 15 6 2.2171 0.0641 2.2812 16 8 1.9973 1.2519 2.2507 17 6 2.7193 -0.5769 3.5492 18 6 2.8631 0.4891 4.6373 19 6 3.3736 -0.1615 5.9245 20 6 3.5180 0.9046 7.0123 21 6 4.0202 0.2636 8.2804 22 1 4.2163 -0.7981 8.3078 23 6 4.2293 1.0325 9.4056 24 7 3.9911 2.3255 9.3720 25 14 4.8524 0.2381 10.9771 26 1 6.1727 -0.3927 10.7232 27 1 4.9925 1.2729 12.0330 28 1 3.8868 -0.7975 11.4248 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 1.6768 -1.7489 -1.2491 34 1 3.9901 -0.3000 -0.5223 35 1 5.8528 -2.3726 -4.1307 36 1 8.3342 -2.3334 -4.0452 37 1 9.4597 -1.2375 -2.1516 38 1 5.8312 -0.2322 -0.4088 39 1 2.0105 -1.3372 3.8774 40 1 3.6884 -1.0398 3.3632 41 1 3.5718 1.2497 4.3093 42 1 1.8938 0.9518 4.8231 43 1 2.6653 -0.9223 6.2526 44 1 4.3429 -0.6239 5.7383 45 1 4.2266 1.6651 6.6839 46 1 2.5489 1.3673 7.1986 47 1 4.1385 2.8666 10.1635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805898124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:19 Heat of formation + Delta-G solvation = -135.294527 kcal Electronic energy + Delta-G solvation = -27309.367532 eV Core-core repulsion = 23262.472898 eV Total energy + Delta-G solvation = -4046.894634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85571 -41.50592 -40.08558 -38.26760 -36.64219 -36.03894 -34.65747 -33.69783 -33.42210 -32.20250 -31.50436 -27.85975 -27.70151 -25.31681 -24.81106 -24.42955 -22.86169 -21.95902 -21.73736 -21.37882 -19.32313 -18.80086 -18.38405 -17.97061 -17.76961 -17.46286 -17.03249 -16.56292 -16.50293 -16.37429 -16.01554 -15.88628 -15.08183 -14.81573 -14.66855 -14.52618 -14.29009 -14.21884 -14.05495 -13.69704 -13.62640 -13.55327 -13.31697 -13.21441 -13.05362 -12.80159 -12.38916 -12.19716 -12.17217 -12.06615 -11.86388 -11.58669 -11.40329 -11.36105 -11.28286 -11.04062 -11.01919 -10.52974 -10.51094 -10.42773 -10.15443 -8.17749 -6.29280 -0.43688 0.17525 1.18338 1.41382 1.44822 1.52496 1.56462 1.71799 1.92508 2.42843 2.80308 3.15188 3.24320 3.45246 3.62907 3.69023 3.76270 3.84389 3.91105 3.98007 3.99591 4.01908 4.11137 4.41089 4.44164 4.52260 4.59495 4.64210 4.65131 4.76656 4.78583 4.80960 4.88801 4.96256 5.07032 5.09157 5.16378 5.20856 5.30049 5.33877 5.44808 5.54987 5.57975 5.79448 5.89638 6.24579 6.26757 6.73967 6.81495 6.89101 6.95625 7.40141 8.94047 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.002074 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.935723 B =13499.832467 C =15643.624042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 H 0.087 0.913 4 C 0.130 3.870 5 N -0.716 5.716 6 C 0.568 3.432 7 O -0.568 6.568 8 C -0.203 4.203 9 C -0.026 4.026 10 C -0.168 4.168 11 C 0.118 3.882 12 N -0.514 5.514 13 C 0.131 3.869 14 O -0.349 6.349 15 C 0.466 3.534 16 O -0.536 6.536 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.097 4.097 20 C 0.019 3.981 21 C -0.542 4.542 22 H 0.065 0.935 23 C -0.006 4.006 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.265 1.265 27 H -0.286 1.286 28 H -0.265 1.265 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.408 0.592 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.190 0.810 38 H 0.166 0.834 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.062 0.938 45 H -0.013 1.013 46 H -0.014 1.014 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -10.441 -29.655 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.105 0.895 4 C 0.007 3.993 5 N -0.368 5.368 6 C 0.355 3.645 7 O -0.449 6.449 8 C -0.209 4.209 9 C -0.053 4.053 10 C -0.187 4.187 11 C -0.038 4.038 12 N -0.223 5.223 13 C -0.028 4.028 14 O -0.267 6.267 15 C 0.311 3.689 16 O -0.425 6.425 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.134 4.134 20 C -0.018 4.018 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.791 3.209 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.195 0.805 37 H 0.207 0.793 38 H 0.183 0.817 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.006 0.994 46 H 0.005 0.995 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.890 -9.900 -29.545 31.217 hybrid contribution -0.203 0.271 0.733 0.808 sum 1.687 -9.628 -28.812 30.425 Atomic orbital electron populations 1.22125 0.91787 1.04315 1.04014 1.23099 0.96562 0.97128 0.81658 0.89544 1.21609 0.79067 1.02585 0.96080 1.45817 1.07797 1.58085 1.25058 1.18201 0.87169 0.77543 0.81542 1.90766 1.70388 1.46652 1.37059 1.20947 0.93487 1.06587 0.99841 1.21973 0.94833 0.92292 0.96174 1.22539 0.94300 1.00855 1.01049 1.23644 1.02240 0.89761 0.88153 1.67778 1.08283 1.18380 1.27833 1.23155 0.90378 0.93303 0.95931 1.86621 1.77006 1.42502 1.20542 1.24227 0.73295 0.85603 0.85770 1.90682 1.49129 1.18229 1.84479 1.21503 1.05484 0.99699 0.87553 1.21341 1.01164 0.97265 0.93950 1.21443 1.00650 0.98071 0.93285 1.19049 0.94561 0.94485 0.93726 1.21728 1.43904 0.95183 0.97162 0.91673 1.26057 0.95878 0.95377 1.03019 1.70112 1.50276 1.06696 1.30610 0.85477 0.79282 0.78050 0.78091 1.18981 1.21140 1.19013 0.92743 0.88284 0.90132 0.87841 0.89811 0.75486 0.83094 0.80513 0.79324 0.81661 0.85583 0.85299 0.92906 0.93161 0.92024 0.91902 0.99445 0.99519 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.55 71.98 0.69 -1.51 16 2 C 0.07 1.11 2.64 30.59 0.08 1.19 16 3 H 0.09 1.52 7.16 -2.38 -0.02 1.51 16 4 C 0.13 1.82 5.37 86.38 0.46 2.28 16 5 N -0.72 -11.07 5.41 -465.99 -2.52 -13.59 16 6 C 0.57 10.87 7.78 86.79 0.68 11.55 16 7 O -0.57 -14.20 16.42 -3.88 -0.06 -14.26 16 8 C -0.20 -3.39 5.89 -19.99 -0.12 -3.50 16 9 C -0.03 -0.36 9.72 22.73 0.22 -0.14 16 10 C -0.17 -1.54 10.10 22.33 0.23 -1.31 16 11 C 0.12 1.36 11.17 84.70 0.95 2.31 16 12 N -0.51 -9.03 10.35 -194.75 -2.01 -11.04 16 13 C 0.13 2.13 10.71 85.02 0.91 3.04 16 14 O -0.35 -6.68 9.64 -51.41 -0.50 -7.17 16 15 C 0.47 11.14 7.93 71.24 0.56 11.71 16 16 O -0.54 -16.48 15.20 21.94 0.33 -16.14 16 17 C -0.11 -2.36 5.81 29.85 0.17 -2.19 16 18 C -0.10 -3.24 4.50 30.59 0.14 -3.10 16 19 C -0.10 -3.75 5.15 30.59 0.16 -3.59 16 20 C 0.02 1.00 4.97 29.85 0.15 1.15 16 21 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 22 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 23 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 24 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 25 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.41 5.42 6.42 -92.71 -0.60 4.83 16 35 H 0.15 1.90 7.74 -2.91 -0.02 1.88 16 36 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.17 2.14 6.42 -2.91 -0.02 2.12 16 39 H 0.13 2.33 8.14 -2.39 -0.02 2.32 16 40 H 0.13 2.29 8.14 -2.39 -0.02 2.28 16 41 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 42 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 46 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 47 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -78.27 402.70 3.90 -74.37 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.37 Total: 11.91 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 5.97 Total: -12.62 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -4.25 Total: -82.45 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.23 Total: -37.58 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -78.27 3.90 -74.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805898124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.922 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds