Wall clock time and date at job start Tue Mar 31 2020 17:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 C 1.53001 * 109.47299 * 119.99204 * 2 1 3 5 5 N 1.46492 * 109.47450 * 185.00211 * 4 2 1 6 6 C 1.34781 * 120.00146 * 180.02562 * 5 4 2 7 7 O 1.21553 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.00009 * 180.02562 * 6 5 4 9 9 C 1.40021 * 120.55803 * 180.27582 * 8 6 5 10 10 C 1.38356 * 118.28930 * 180.24574 * 9 8 6 11 11 C 1.38352 * 119.30108 * 359.45848 * 10 9 8 12 12 N 1.31932 * 121.08122 * 0.30529 * 11 10 9 13 13 C 1.31691 * 121.87508 * 359.97091 * 12 11 10 14 14 O 1.45201 * 109.47808 * 239.99628 * 2 1 3 15 15 C 1.34229 * 116.99644 * 89.99591 * 14 2 1 16 16 O 1.20823 * 120.00503 * 0.02562 * 15 14 2 17 17 C 1.50706 * 119.99582 * 180.02562 * 15 14 2 18 18 C 1.53004 * 109.46867 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46741 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46741 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47063 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99804 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00519 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99812 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46961 * 60.00170 * 25 23 21 27 27 H 1.48501 * 109.46728 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47101 * 300.00035 * 25 23 21 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47730 * 300.00173 * 1 2 3 31 31 H 1.09001 * 109.47101 * 60.00563 * 1 2 3 32 32 H 1.08997 * 109.46656 * 65.00485 * 4 2 1 33 33 H 1.08996 * 109.47492 * 305.00655 * 4 2 1 34 34 H 0.96999 * 120.00480 * 0.02562 * 5 4 2 35 35 H 1.08004 * 120.85972 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.35338 * 179.74185 * 10 9 8 37 37 H 1.08003 * 119.46505 * 180.28229 * 11 10 9 38 38 H 1.08005 * 119.71425 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47165 * 300.00277 * 17 15 14 40 40 H 1.09000 * 109.46819 * 60.00616 * 17 15 14 41 41 H 1.09003 * 109.46930 * 299.99983 * 18 17 15 42 42 H 1.09000 * 109.46755 * 59.99862 * 18 17 15 43 43 H 1.09003 * 109.47154 * 299.99551 * 19 18 17 44 44 H 1.09000 * 109.47124 * 60.00404 * 19 18 17 45 45 H 1.08997 * 109.47370 * 299.99753 * 20 19 18 46 46 H 1.09007 * 109.46971 * 59.99913 * 20 19 18 47 47 H 0.96995 * 120.00482 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.4999 -0.6177 1.3111 6 6 4.1730 -1.1832 2.3328 7 8 3.5686 -1.7794 3.2027 8 6 5.6464 -1.0783 2.3953 9 6 6.3578 -1.6662 3.4483 10 6 7.7350 -1.5348 3.4632 11 6 8.3602 -0.8431 2.4410 12 7 7.6643 -0.3035 1.4586 13 6 6.3518 -0.3968 1.4032 14 8 2.0141 -0.6845 -1.1855 15 6 2.2172 0.0640 -2.2810 16 8 1.9981 1.2518 -2.2504 17 6 2.7185 -0.5774 -3.5494 18 6 2.8637 0.4889 -4.6370 19 6 3.3720 -0.1623 -5.9248 20 6 3.5167 0.9038 -7.0127 21 6 4.0179 0.2626 -8.2810 22 1 4.2133 -0.7993 -8.3085 23 6 4.2260 1.0313 -9.4065 24 7 3.9876 2.3241 -9.3732 25 14 4.8467 0.2362 -10.9789 26 1 3.8800 -0.7989 -11.4251 27 1 4.9872 1.2710 -12.0346 28 1 6.1669 -0.3953 -10.7265 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -1.7713 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 3.9823 -0.1422 0.6167 35 1 5.8444 -2.2047 4.2312 36 1 8.3164 -1.9714 4.2618 37 1 9.4356 -0.7428 2.4475 38 1 5.8170 0.0580 0.5824 39 1 3.6873 -1.0409 -3.3638 40 1 2.0089 -1.3371 -3.8773 41 1 1.8950 0.9528 -4.8227 42 1 3.5734 1.2483 -4.3088 43 1 4.3407 -0.6265 -5.7394 44 1 2.6620 -0.9215 -6.2528 45 1 2.5479 1.3677 -7.1980 46 1 4.2265 1.6634 -6.6849 47 1 4.1344 2.8650 -10.1649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805898125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:23 Heat of formation + Delta-G solvation = -113.334256 kcal Electronic energy + Delta-G solvation = -27267.530207 eV Core-core repulsion = 23221.587842 eV Total energy + Delta-G solvation = -4045.942365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12174 -40.68487 -39.39926 -37.32892 -35.30338 -35.01445 -33.08255 -32.89892 -32.60386 -31.57842 -29.88677 -27.19805 -26.03731 -24.66300 -23.96342 -23.26153 -21.80911 -21.17918 -20.55265 -20.06891 -18.68113 -17.83501 -17.35121 -17.15285 -16.49433 -16.25777 -16.18496 -15.84888 -15.65609 -15.27666 -14.74134 -14.47175 -14.38551 -14.17723 -13.82371 -13.64659 -13.41236 -13.22024 -12.95462 -12.72140 -12.68764 -12.42928 -12.32312 -11.80575 -11.68585 -11.36756 -11.04006 -11.01382 -10.69064 -10.62419 -10.60068 -10.49255 -10.44613 -10.43153 -9.91704 -9.81018 -9.67785 -9.55502 -9.30863 -9.05073 -8.32831 -5.97678 -4.00410 0.13062 0.70052 2.17043 2.37710 2.45715 2.57078 3.34269 3.36619 3.38751 3.40970 3.76972 4.12243 4.19177 4.29518 4.36381 4.46877 4.47449 4.55814 4.57253 4.67206 4.87763 5.04818 5.06490 5.13920 5.21174 5.22323 5.37784 5.39493 5.41312 5.48476 5.56017 5.66827 5.72215 5.84815 6.01058 6.02815 6.14857 6.29481 6.43007 6.72874 6.90664 6.90906 7.13354 7.35271 7.65087 7.69599 7.70717 7.84662 8.02649 8.44392 9.06838 9.63470 11.13563 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.002040 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.451669 B =13721.080682 C =15795.519276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.093 0.907 4 C 0.125 3.875 5 N -0.722 5.722 6 C 0.567 3.433 7 O -0.534 6.534 8 C -0.190 4.190 9 C -0.016 4.016 10 C -0.180 4.180 11 C 0.124 3.876 12 N -0.484 5.484 13 C 0.138 3.862 14 O -0.355 6.355 15 C 0.459 3.541 16 O -0.502 6.502 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.110 4.110 20 C 0.020 3.980 21 C -0.522 4.522 22 H 0.054 0.946 23 C 0.056 3.944 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -7.785 29.218 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.111 0.889 4 C 0.002 3.998 5 N -0.375 5.375 6 C 0.354 3.646 7 O -0.412 6.412 8 C -0.196 4.196 9 C -0.042 4.042 10 C -0.200 4.200 11 C -0.033 4.033 12 N -0.192 5.192 13 C -0.021 4.021 14 O -0.273 6.273 15 C 0.302 3.698 16 O -0.388 6.388 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.017 4.017 21 C -0.560 4.560 22 H 0.072 0.928 23 C -0.145 4.145 24 N -0.535 5.535 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.238 0.762 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.942 -7.227 29.107 30.006 hybrid contribution 0.070 -0.450 -0.582 0.739 sum 1.012 -7.677 28.525 29.558 Atomic orbital electron populations 1.22114 0.92830 1.03675 1.03837 1.22936 0.95713 0.97528 0.82350 0.88890 1.21578 0.79480 1.02592 0.96156 1.45842 1.07998 1.56925 1.26689 1.18010 0.86569 0.78558 0.81496 1.90791 1.69624 1.42168 1.38597 1.20967 0.94271 1.04955 0.99359 1.21751 0.93829 0.92914 0.95746 1.22215 0.95004 1.01669 1.01099 1.23108 1.00879 0.90699 0.88588 1.67760 1.07889 1.18878 1.24684 1.23028 0.90336 0.92848 0.95861 1.86653 1.77319 1.42834 1.20521 1.24289 0.74070 0.86192 0.85266 1.90677 1.47521 1.16741 1.83888 1.21638 1.03347 1.01000 0.89034 1.21581 1.02688 0.96482 0.93819 1.21653 0.99410 0.99809 0.93913 1.19091 0.97169 0.93469 0.91935 1.21228 1.44160 0.94502 0.96106 0.92755 1.25037 0.95707 0.94852 0.98944 1.69953 1.49043 1.04998 1.29458 0.86664 0.79396 0.78951 0.83013 1.20267 1.21317 1.20254 0.91016 0.90362 0.91016 0.89680 0.88972 0.76160 0.83429 0.83797 0.81959 0.82492 0.87865 0.87821 0.91552 0.91510 0.93181 0.93215 0.96567 0.96549 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.55 37.15 0.35 -0.86 16 2 C 0.07 0.59 2.59 -26.73 -0.07 0.52 16 3 H 0.09 0.84 7.16 -51.93 -0.37 0.47 16 4 C 0.13 0.95 5.35 -4.05 -0.02 0.93 16 5 N -0.72 -5.81 5.46 -61.26 -0.33 -6.14 16 6 C 0.57 5.51 7.78 -12.33 -0.10 5.41 16 7 O -0.53 -6.71 16.42 5.32 0.09 -6.63 16 8 C -0.19 -1.62 5.89 -104.82 -0.62 -2.24 16 9 C -0.02 -0.12 9.72 -38.87 -0.38 -0.49 16 10 C -0.18 -1.01 10.10 -39.50 -0.40 -1.41 16 11 C 0.12 0.82 11.17 -17.47 -0.20 0.63 16 12 N -0.48 -4.44 10.35 -12.91 -0.13 -4.57 16 13 C 0.14 1.15 10.71 -17.13 -0.18 0.96 16 14 O -0.36 -3.68 9.83 -39.25 -0.39 -4.07 16 15 C 0.46 5.74 7.93 36.01 0.29 6.03 16 16 O -0.50 -7.70 15.20 -18.75 -0.28 -7.98 16 17 C -0.11 -1.38 5.81 -27.88 -0.16 -1.54 16 18 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 19 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 20 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 21 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 22 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 25 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.77 6.54 -40.82 -0.27 2.50 16 35 H 0.15 0.98 7.74 -52.48 -0.41 0.57 16 36 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 37 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.16 1.02 6.42 -52.48 -0.34 0.68 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 403.00 15.07 6.07 6.07 Total: -1.00 -35.40 403.00 -8.81 -44.21 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.26 Total: -1.70 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.29 Total: -9.45 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.27 Total: -37.13 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.58 Total: -18.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.40 -8.81 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805898125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.123 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds