Wall clock time and date at job start Tue Mar 31 2020 17:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 C 1.53001 * 109.47299 * 119.99204 * 2 1 3 5 5 N 1.46492 * 109.47450 * 185.00211 * 4 2 1 6 6 C 1.34781 * 120.00146 * 180.02562 * 5 4 2 7 7 O 1.21553 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.00009 * 180.02562 * 6 5 4 9 9 C 1.40021 * 120.55803 * 180.27582 * 8 6 5 10 10 C 1.38356 * 118.28930 * 180.24574 * 9 8 6 11 11 C 1.38352 * 119.30108 * 359.45848 * 10 9 8 12 12 N 1.31932 * 121.08122 * 0.30529 * 11 10 9 13 13 C 1.31691 * 121.87508 * 359.97091 * 12 11 10 14 14 O 1.45201 * 109.47808 * 239.99628 * 2 1 3 15 15 C 1.34229 * 116.99644 * 89.99591 * 14 2 1 16 16 O 1.20823 * 120.00503 * 0.02562 * 15 14 2 17 17 C 1.50706 * 119.99582 * 180.02562 * 15 14 2 18 18 C 1.53004 * 109.46867 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46741 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46741 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47063 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99804 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00519 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99812 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46961 * 60.00170 * 25 23 21 27 27 H 1.48501 * 109.46728 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47101 * 300.00035 * 25 23 21 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47730 * 300.00173 * 1 2 3 31 31 H 1.09001 * 109.47101 * 60.00563 * 1 2 3 32 32 H 1.08997 * 109.46656 * 65.00485 * 4 2 1 33 33 H 1.08996 * 109.47492 * 305.00655 * 4 2 1 34 34 H 0.96999 * 120.00480 * 0.02562 * 5 4 2 35 35 H 1.08004 * 120.85972 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.35338 * 179.74185 * 10 9 8 37 37 H 1.08003 * 119.46505 * 180.28229 * 11 10 9 38 38 H 1.08005 * 119.71425 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47165 * 300.00277 * 17 15 14 40 40 H 1.09000 * 109.46819 * 60.00616 * 17 15 14 41 41 H 1.09003 * 109.46930 * 299.99983 * 18 17 15 42 42 H 1.09000 * 109.46755 * 59.99862 * 18 17 15 43 43 H 1.09003 * 109.47154 * 299.99551 * 19 18 17 44 44 H 1.09000 * 109.47124 * 60.00404 * 19 18 17 45 45 H 1.08997 * 109.47370 * 299.99753 * 20 19 18 46 46 H 1.09007 * 109.46971 * 59.99913 * 20 19 18 47 47 H 0.96995 * 120.00482 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.4999 -0.6177 1.3111 6 6 4.1730 -1.1832 2.3328 7 8 3.5686 -1.7794 3.2027 8 6 5.6464 -1.0783 2.3953 9 6 6.3578 -1.6662 3.4483 10 6 7.7350 -1.5348 3.4632 11 6 8.3602 -0.8431 2.4410 12 7 7.6643 -0.3035 1.4586 13 6 6.3518 -0.3968 1.4032 14 8 2.0141 -0.6845 -1.1855 15 6 2.2172 0.0640 -2.2810 16 8 1.9981 1.2518 -2.2504 17 6 2.7185 -0.5774 -3.5494 18 6 2.8637 0.4889 -4.6370 19 6 3.3720 -0.1623 -5.9248 20 6 3.5167 0.9038 -7.0127 21 6 4.0179 0.2626 -8.2810 22 1 4.2133 -0.7993 -8.3085 23 6 4.2260 1.0313 -9.4065 24 7 3.9876 2.3241 -9.3732 25 14 4.8467 0.2362 -10.9789 26 1 3.8800 -0.7989 -11.4251 27 1 4.9872 1.2710 -12.0346 28 1 6.1669 -0.3953 -10.7265 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -1.7713 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 3.9823 -0.1422 0.6167 35 1 5.8444 -2.2047 4.2312 36 1 8.3164 -1.9714 4.2618 37 1 9.4356 -0.7428 2.4475 38 1 5.8170 0.0580 0.5824 39 1 3.6873 -1.0409 -3.3638 40 1 2.0089 -1.3371 -3.8773 41 1 1.8950 0.9528 -4.8227 42 1 3.5734 1.2483 -4.3088 43 1 4.3407 -0.6265 -5.7394 44 1 2.6620 -0.9215 -6.2528 45 1 2.5479 1.3677 -7.1980 46 1 4.2265 1.6634 -6.6849 47 1 4.1344 2.8650 -10.1649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805898125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:22 Heat of formation + Delta-G solvation = -135.380652 kcal Electronic energy + Delta-G solvation = -27268.486210 eV Core-core repulsion = 23221.587842 eV Total energy + Delta-G solvation = -4046.898369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85341 -41.50997 -40.08935 -38.26635 -36.64315 -36.05557 -34.65848 -33.69748 -33.42076 -32.20307 -31.50416 -27.86216 -27.70188 -25.32292 -24.80912 -24.43002 -22.86318 -21.98852 -21.73022 -21.37242 -19.32346 -18.79801 -18.38503 -17.96987 -17.76830 -17.46714 -17.03679 -16.56127 -16.50430 -16.37974 -16.01916 -15.89079 -15.07005 -14.81744 -14.67056 -14.52700 -14.30287 -14.21682 -14.04983 -13.70203 -13.65276 -13.53707 -13.31767 -13.21699 -13.05369 -12.80270 -12.38993 -12.19624 -12.17464 -12.05803 -11.87597 -11.59195 -11.40125 -11.36103 -11.28343 -11.04153 -11.02200 -10.53084 -10.51428 -10.43221 -10.15914 -8.17765 -6.29349 -0.43989 0.17220 1.18385 1.41314 1.44777 1.52469 1.57531 1.71460 1.91330 2.42745 2.79997 3.15138 3.23869 3.45035 3.62544 3.68781 3.75957 3.84887 3.91062 3.97846 3.99070 4.01101 4.10948 4.40875 4.43876 4.52488 4.59226 4.63946 4.64919 4.76704 4.78328 4.80748 4.88629 4.95993 5.06799 5.09019 5.16245 5.20533 5.30040 5.33744 5.44858 5.54697 5.57850 5.79322 5.89531 6.24010 6.26696 6.74012 6.81120 6.89008 6.95261 7.40102 8.94015 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.002040 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.451669 B =13721.080682 C =15795.519276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 H 0.087 0.913 4 C 0.129 3.871 5 N -0.717 5.717 6 C 0.568 3.432 7 O -0.568 6.568 8 C -0.203 4.203 9 C -0.026 4.026 10 C -0.168 4.168 11 C 0.118 3.882 12 N -0.514 5.514 13 C 0.130 3.870 14 O -0.350 6.350 15 C 0.466 3.534 16 O -0.536 6.536 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.097 4.097 20 C 0.019 3.981 21 C -0.542 4.542 22 H 0.065 0.935 23 C -0.006 4.006 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.265 1.265 27 H -0.286 1.286 28 H -0.265 1.265 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.408 0.592 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.190 0.810 38 H 0.166 0.834 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.061 0.939 45 H -0.013 1.013 46 H -0.013 1.013 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -9.867 30.006 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.105 0.895 4 C 0.006 3.994 5 N -0.368 5.368 6 C 0.356 3.644 7 O -0.448 6.448 8 C -0.209 4.209 9 C -0.053 4.053 10 C -0.187 4.187 11 C -0.038 4.038 12 N -0.223 5.223 13 C -0.028 4.028 14 O -0.267 6.267 15 C 0.311 3.689 16 O -0.425 6.425 17 C -0.142 4.142 18 C -0.137 4.137 19 C -0.135 4.135 20 C -0.018 4.018 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.791 3.209 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.195 0.805 37 H 0.207 0.793 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.005 0.995 46 H 0.006 0.994 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.843 -9.326 29.896 31.371 hybrid contribution -0.191 0.227 -0.757 0.813 sum 1.653 -9.099 29.139 30.571 Atomic orbital electron populations 1.22122 0.91758 1.04337 1.04019 1.23093 0.96558 0.97124 0.81683 0.89510 1.21596 0.79242 1.02473 0.96054 1.45845 1.08274 1.56318 1.26399 1.18200 0.87081 0.77989 0.81177 1.90766 1.70330 1.43876 1.39864 1.20947 0.93598 1.06058 1.00258 1.21974 0.94792 0.92929 0.95573 1.22540 0.94362 1.00478 1.01359 1.23645 1.02150 0.89928 0.88070 1.67777 1.08272 1.20108 1.26132 1.23155 0.90408 0.93031 0.96187 1.86628 1.77002 1.42507 1.20558 1.24219 0.73281 0.85613 0.85777 1.90678 1.49141 1.18198 1.84495 1.21503 1.05458 0.99707 0.87580 1.21343 1.01178 0.97253 0.93938 1.21445 1.00650 0.98077 0.93283 1.19050 0.94564 0.94483 0.93724 1.21727 1.43942 0.95178 0.97142 0.91678 1.26055 0.95870 0.95378 1.03017 1.70106 1.50265 1.06708 1.30603 0.85479 0.79278 0.78055 0.78100 1.19003 1.21133 1.18995 0.90108 0.88288 0.92734 0.89835 0.87742 0.75494 0.83092 0.80508 0.79316 0.81661 0.85374 0.85576 0.93147 0.92898 0.91916 0.92023 0.99499 0.99449 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.55 71.98 0.69 -1.51 16 2 C 0.07 1.11 2.59 30.59 0.08 1.18 16 3 H 0.09 1.52 7.16 -2.38 -0.02 1.51 16 4 C 0.13 1.81 5.35 86.38 0.46 2.28 16 5 N -0.72 -11.03 5.46 -465.99 -2.55 -13.57 16 6 C 0.57 10.84 7.78 86.79 0.68 11.52 16 7 O -0.57 -14.18 16.42 -3.88 -0.06 -14.24 16 8 C -0.20 -3.37 5.89 -19.99 -0.12 -3.49 16 9 C -0.03 -0.36 9.72 22.73 0.22 -0.14 16 10 C -0.17 -1.53 10.10 22.33 0.23 -1.30 16 11 C 0.12 1.36 11.17 84.70 0.95 2.30 16 12 N -0.51 -8.99 10.35 -194.75 -2.01 -11.00 16 13 C 0.13 2.11 10.71 85.02 0.91 3.03 16 14 O -0.35 -6.75 9.83 -51.40 -0.51 -7.25 16 15 C 0.47 11.21 7.93 71.24 0.56 11.77 16 16 O -0.54 -16.49 15.20 21.97 0.33 -16.15 16 17 C -0.11 -2.38 5.81 29.85 0.17 -2.21 16 18 C -0.10 -3.25 4.50 30.60 0.14 -3.11 16 19 C -0.10 -3.76 5.15 30.60 0.16 -3.60 16 20 C 0.02 1.00 4.97 29.85 0.15 1.15 16 21 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 22 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 23 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 24 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 25 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.41 5.36 6.54 -92.71 -0.61 4.76 16 35 H 0.15 1.89 7.74 -2.91 -0.02 1.87 16 36 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 37 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.17 2.13 6.42 -2.91 -0.02 2.11 16 39 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 42 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 47 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.28 403.00 3.85 -74.43 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.36 Total: 11.86 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 5.97 Total: -12.63 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.28 Total: -82.39 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.24 Total: -37.65 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -78.28 3.85 -74.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805898125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.952 kcal (2) G-P(sol) polarization free energy of solvation -78.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds