Wall clock time and date at job start Tue Mar 31 2020 18:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46888 * 2 1 4 4 C 1.50700 * 109.46781 * 120.00043 * 2 1 3 5 5 C 1.38627 * 120.31968 * 120.00376 * 4 2 1 6 6 C 1.38583 * 118.49225 * 179.97438 * 5 4 2 7 7 C 1.39350 * 119.05256 * 359.97438 * 6 5 4 8 8 C 1.48075 * 119.72464 * 179.97438 * 7 6 5 9 9 O 1.21425 * 119.99784 * 0.02562 * 8 7 6 10 10 O 1.34678 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.45204 * 116.99788 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47048 * 29.99812 * 11 10 8 13 13 C 1.53002 * 109.47018 * 269.99901 * 11 10 8 14 14 C 1.50695 * 109.46878 * 149.99799 * 11 10 8 15 15 O 1.21282 * 120.00125 * 16.02954 * 14 11 10 16 16 N 1.34778 * 119.99762 * 196.02653 * 14 11 10 17 17 C 1.46494 * 120.00024 * 5.36147 * 16 14 11 18 18 C 1.46500 * 119.99800 * 185.36845 * 16 14 11 19 19 C 1.50700 * 109.47723 * 89.99878 * 18 16 14 20 20 H 1.08003 * 119.99626 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00482 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00007 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46846 * 119.99787 * 23 21 19 26 26 H 1.48496 * 109.47178 * 239.99495 * 23 21 19 27 27 N 1.32747 * 120.54986 * 0.25875 * 7 6 5 28 28 C 1.31502 * 121.64039 * 359.47272 * 27 7 6 29 29 H 1.09003 * 109.47168 * 300.00022 * 1 2 3 30 30 H 1.09001 * 109.47107 * 59.99390 * 1 2 3 31 31 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46538 * 240.00154 * 2 1 3 33 33 H 1.09004 * 109.47597 * 60.00417 * 3 2 1 34 34 H 1.09004 * 109.46887 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47461 * 299.99781 * 3 2 1 36 36 H 1.07997 * 120.75170 * 359.94813 * 5 4 2 37 37 H 1.07997 * 120.47786 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.46846 * 66.13393 * 13 11 10 39 39 H 1.08996 * 109.47075 * 186.13790 * 13 11 10 40 40 H 1.09005 * 109.46839 * 306.13826 * 13 11 10 41 41 H 1.09001 * 109.46961 * 84.83009 * 17 16 14 42 42 H 1.09001 * 109.47279 * 204.82150 * 17 16 14 43 43 H 1.08994 * 109.47519 * 324.82778 * 17 16 14 44 44 H 1.09009 * 109.47071 * 209.99778 * 18 16 14 45 45 H 1.08999 * 109.47589 * 329.99727 * 18 16 14 46 46 H 0.96998 * 119.99884 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.55212 * 180.26719 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8297 -1.8381 1.1110 6 6 3.2709 -2.4613 2.2675 7 6 2.9001 -1.9352 3.5034 8 6 3.3627 -2.5895 4.7486 9 8 4.0626 -3.5800 4.6900 10 8 3.0071 -2.0860 5.9461 11 6 3.4975 -2.7786 7.1243 12 1 4.4565 -3.2450 6.8987 13 6 2.4919 -3.8548 7.5386 14 6 3.6709 -1.7927 8.2507 15 8 3.1472 -0.7007 8.1868 16 7 4.4079 -2.1245 9.3292 17 6 5.1363 -3.3953 9.3557 18 6 4.4806 -1.2145 10.4749 19 6 3.3741 -1.5389 11.4452 20 1 2.6853 -2.3424 11.2297 21 6 3.2403 -0.8094 12.6074 22 7 4.0787 0.1694 12.8696 23 14 1.8683 -1.2112 13.8098 24 1 1.0682 -2.3473 13.2861 25 1 2.4539 -1.5825 15.1230 26 1 0.9926 -0.0235 13.9764 27 7 2.1309 -0.8555 3.5738 28 6 1.7027 -0.2419 2.4924 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.1005 -2.2224 0.1388 37 1 3.8940 -3.3416 2.2118 38 1 2.4478 -4.6261 6.7697 39 1 2.8051 -4.3004 8.4828 40 1 1.5065 -3.4044 7.6585 41 1 6.1001 -3.2720 8.8618 42 1 5.2947 -3.7018 10.3897 43 1 4.5563 -4.1575 8.8356 44 1 5.4443 -1.3308 10.9708 45 1 4.3713 -0.1863 10.1299 46 1 3.9849 0.6824 13.6875 47 1 1.0819 0.6365 2.5889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811264115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:03 Heat of formation + Delta-G solvation = -86.929115 kcal Electronic energy + Delta-G solvation = -28318.486148 eV Core-core repulsion = 24273.688796 eV Total energy + Delta-G solvation = -4044.797352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13953 -40.17366 -38.81331 -36.52279 -36.20193 -34.83543 -32.83650 -32.67678 -31.68493 -30.64406 -27.76220 -27.60793 -26.07462 -25.63672 -24.23832 -24.19863 -22.68862 -21.35091 -20.67242 -18.83814 -18.47821 -17.42721 -16.61437 -16.50325 -16.21607 -16.07655 -15.67822 -15.25348 -14.87124 -14.68952 -14.57788 -14.38884 -14.22555 -13.73536 -13.61391 -13.36702 -13.25047 -13.01198 -12.74829 -12.61580 -12.30519 -12.11760 -12.04666 -11.71538 -11.68246 -11.59826 -11.41734 -11.35638 -11.21674 -10.91039 -10.84587 -10.68350 -10.54252 -10.23849 -10.15836 -9.77465 -9.61641 -9.39492 -8.85675 -8.43765 -7.67950 -6.04357 -4.09431 0.20899 0.88509 2.23992 2.37237 3.28703 3.30501 3.38446 3.42716 3.50242 3.73825 3.99778 4.17202 4.27462 4.44280 4.47439 4.58643 4.67270 4.67422 4.84034 4.88041 5.03271 5.08793 5.14847 5.18018 5.30267 5.30358 5.37022 5.37544 5.48144 5.56008 5.59552 5.64164 5.72197 5.76633 5.78432 5.89529 5.90964 6.11333 6.18533 6.26918 6.35953 7.01470 7.37334 7.43616 7.51079 7.75733 7.92096 8.21951 8.33122 8.87500 9.02901 9.55661 11.03807 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.002314 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.968073 B =12099.149847 C =12890.133885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.148 4.148 4 C -0.100 4.100 5 C -0.085 4.085 6 C -0.102 4.102 7 C 0.089 3.911 8 C 0.521 3.479 9 O -0.504 6.504 10 O -0.299 6.299 11 C 0.067 3.933 12 H 0.103 0.897 13 C -0.164 4.164 14 C 0.510 3.490 15 O -0.515 6.515 16 N -0.597 5.597 17 C 0.074 3.926 18 C 0.245 3.755 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.282 1.282 27 N -0.422 5.422 28 C 0.103 3.897 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -5.596 -27.537 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 C -0.205 4.205 4 C -0.103 4.103 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.047 4.047 8 C 0.364 3.636 9 O -0.392 6.392 10 O -0.213 6.213 11 C 0.009 3.991 12 H 0.121 0.879 13 C -0.222 4.222 14 C 0.294 3.706 15 O -0.390 6.390 16 N -0.331 5.331 17 C -0.070 4.070 18 C 0.127 3.873 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.208 1.208 27 N -0.132 5.132 28 C -0.058 4.058 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.810 -4.865 -26.507 27.096 hybrid contribution -0.342 -0.709 0.047 0.788 sum -3.151 -5.574 -26.460 27.223 Atomic orbital electron populations 1.21893 0.93596 1.02380 1.02627 1.20158 0.96463 0.96347 0.94412 1.21897 1.01481 0.94530 1.02635 1.21280 0.96492 0.95617 0.96870 1.21499 0.96125 0.94561 0.98885 1.22095 0.98508 1.00432 0.91168 1.20049 0.99136 0.94735 0.90791 1.20860 0.76999 0.81464 0.84248 1.90814 1.35709 1.24930 1.87739 1.86817 1.67532 1.53808 1.13104 1.22765 0.99895 0.93185 0.83286 0.87929 1.22166 0.99971 0.97183 1.02851 1.19718 0.80363 0.87587 0.82925 1.90714 1.46961 1.22409 1.78942 1.48069 1.46781 1.20736 1.17557 1.21825 0.95614 0.86017 1.03550 1.19369 0.97321 0.89609 0.81032 1.21468 1.13911 1.17347 1.03918 0.92296 1.24944 0.96359 0.94810 0.98025 1.69945 1.36849 1.20619 1.25846 0.86429 0.81929 0.78383 0.80598 1.19775 1.20966 1.20836 1.67759 1.06693 1.05764 1.32999 1.22771 0.97561 0.98951 0.86534 0.91955 0.91808 0.92352 0.89877 0.91929 0.92304 0.91804 0.83753 0.83092 0.91295 0.89381 0.90528 0.93470 0.90087 0.92268 0.94635 0.93561 0.92726 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 2 C -0.05 -0.28 3.11 -91.77 -0.29 -0.57 16 3 C -0.15 -0.74 9.01 37.16 0.33 -0.40 16 4 C -0.10 -0.78 4.80 -104.35 -0.50 -1.28 16 5 C -0.09 -0.64 9.79 -39.31 -0.39 -1.03 16 6 C -0.10 -1.03 9.63 -39.04 -0.38 -1.41 16 7 C 0.09 1.23 6.75 -83.02 -0.56 0.67 16 8 C 0.52 8.45 7.92 34.77 0.28 8.73 16 9 O -0.50 -8.16 15.58 -19.21 -0.30 -8.46 16 10 O -0.30 -5.64 9.28 -46.95 -0.44 -6.07 16 11 C 0.07 1.20 2.14 -27.88 -0.06 1.15 16 12 H 0.10 1.65 6.31 -51.93 -0.33 1.32 16 13 C -0.16 -2.50 9.19 37.16 0.34 -2.15 16 14 C 0.51 11.48 6.95 -10.99 -0.08 11.40 16 15 O -0.52 -14.00 16.13 -13.54 -0.22 -14.22 16 16 N -0.60 -13.13 2.86 -182.96 -0.52 -13.65 16 17 C 0.07 1.20 9.79 59.84 0.59 1.79 16 18 C 0.25 6.53 5.18 -5.19 -0.03 6.50 16 19 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 20 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 N -0.42 -6.03 10.12 -9.81 -0.10 -6.13 16 28 C 0.10 1.05 9.90 -17.56 -0.17 0.88 16 29 H 0.06 0.31 7.41 -51.93 -0.38 -0.07 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.33 7.92 -51.93 -0.41 -0.08 16 33 H 0.06 0.33 7.41 -51.93 -0.38 -0.05 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.14 0.63 8.00 -52.49 -0.42 0.21 16 37 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.25 6.33 -51.93 -0.33 0.92 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 43 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 44 H 0.04 0.94 8.07 -51.92 -0.42 0.53 16 45 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.16 1.34 7.12 -52.49 -0.37 0.96 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -36.16 395.76 -7.90 -44.05 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.01 Total: -2.64 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -0.99 Total: 10.21 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.11 Total: -45.79 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.95 Total: -28.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.16 -7.90 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811264115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.875 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds