Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46888 * 2 1 4 4 C 1.50700 * 109.46781 * 120.00043 * 2 1 3 5 5 C 1.38627 * 120.31968 * 120.00376 * 4 2 1 6 6 C 1.38583 * 118.49225 * 179.97438 * 5 4 2 7 7 C 1.39350 * 119.05256 * 359.97438 * 6 5 4 8 8 C 1.48075 * 119.72464 * 179.97438 * 7 6 5 9 9 O 1.21425 * 119.99784 * 0.02562 * 8 7 6 10 10 O 1.34678 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.45204 * 116.99788 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47048 * 29.99812 * 11 10 8 13 13 C 1.53002 * 109.47018 * 269.99901 * 11 10 8 14 14 C 1.50695 * 109.46878 * 149.99799 * 11 10 8 15 15 O 1.21282 * 120.00125 * 16.02954 * 14 11 10 16 16 N 1.34778 * 119.99762 * 196.02653 * 14 11 10 17 17 C 1.46494 * 120.00024 * 5.36147 * 16 14 11 18 18 C 1.46500 * 119.99800 * 185.36845 * 16 14 11 19 19 C 1.50700 * 109.47723 * 89.99878 * 18 16 14 20 20 H 1.08003 * 119.99626 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00482 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00007 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46846 * 119.99787 * 23 21 19 26 26 H 1.48496 * 109.47178 * 239.99495 * 23 21 19 27 27 N 1.32747 * 120.54986 * 0.25875 * 7 6 5 28 28 C 1.31502 * 121.64039 * 359.47272 * 27 7 6 29 29 H 1.09003 * 109.47168 * 300.00022 * 1 2 3 30 30 H 1.09001 * 109.47107 * 59.99390 * 1 2 3 31 31 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46538 * 240.00154 * 2 1 3 33 33 H 1.09004 * 109.47597 * 60.00417 * 3 2 1 34 34 H 1.09004 * 109.46887 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47461 * 299.99781 * 3 2 1 36 36 H 1.07997 * 120.75170 * 359.94813 * 5 4 2 37 37 H 1.07997 * 120.47786 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.46846 * 66.13393 * 13 11 10 39 39 H 1.08996 * 109.47075 * 186.13790 * 13 11 10 40 40 H 1.09005 * 109.46839 * 306.13826 * 13 11 10 41 41 H 1.09001 * 109.46961 * 84.83009 * 17 16 14 42 42 H 1.09001 * 109.47279 * 204.82150 * 17 16 14 43 43 H 1.08994 * 109.47519 * 324.82778 * 17 16 14 44 44 H 1.09009 * 109.47071 * 209.99778 * 18 16 14 45 45 H 1.08999 * 109.47589 * 329.99727 * 18 16 14 46 46 H 0.96998 * 119.99884 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.55212 * 180.26719 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8297 -1.8381 1.1110 6 6 3.2709 -2.4613 2.2675 7 6 2.9001 -1.9352 3.5034 8 6 3.3627 -2.5895 4.7486 9 8 4.0626 -3.5800 4.6900 10 8 3.0071 -2.0860 5.9461 11 6 3.4975 -2.7786 7.1243 12 1 4.4565 -3.2450 6.8987 13 6 2.4919 -3.8548 7.5386 14 6 3.6709 -1.7927 8.2507 15 8 3.1472 -0.7007 8.1868 16 7 4.4079 -2.1245 9.3292 17 6 5.1363 -3.3953 9.3557 18 6 4.4806 -1.2145 10.4749 19 6 3.3741 -1.5389 11.4452 20 1 2.6853 -2.3424 11.2297 21 6 3.2403 -0.8094 12.6074 22 7 4.0787 0.1694 12.8696 23 14 1.8683 -1.2112 13.8098 24 1 1.0682 -2.3473 13.2861 25 1 2.4539 -1.5825 15.1230 26 1 0.9926 -0.0235 13.9764 27 7 2.1309 -0.8555 3.5738 28 6 1.7027 -0.2419 2.4924 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.1005 -2.2224 0.1388 37 1 3.8940 -3.3416 2.2118 38 1 2.4478 -4.6261 6.7697 39 1 2.8051 -4.3004 8.4828 40 1 1.5065 -3.4044 7.6585 41 1 6.1001 -3.2720 8.8618 42 1 5.2947 -3.7018 10.3897 43 1 4.5563 -4.1575 8.8356 44 1 5.4443 -1.3308 10.9708 45 1 4.3713 -0.1863 10.1299 46 1 3.9849 0.6824 13.6875 47 1 1.0819 0.6365 2.5889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811264115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = -109.233221 kcal Electronic energy + Delta-G solvation = -28319.453327 eV Core-core repulsion = 24273.688796 eV Total energy + Delta-G solvation = -4045.764531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19825 -41.30860 -40.39462 -37.78397 -36.85956 -36.70961 -34.87402 -33.47124 -33.12229 -31.46612 -29.72233 -27.97249 -27.61208 -26.67276 -25.82397 -24.98143 -24.26690 -22.50899 -21.30723 -20.45137 -19.65760 -18.70993 -18.52129 -17.76813 -17.66056 -17.34961 -16.95380 -16.33290 -16.30774 -16.22956 -15.63510 -15.30143 -15.05664 -14.79379 -14.73055 -14.34792 -14.29330 -14.09181 -13.88951 -13.80316 -13.65915 -13.57272 -13.35114 -13.12800 -12.99877 -12.86253 -12.70259 -12.53565 -12.22906 -12.14870 -12.09883 -12.06431 -11.99953 -11.74725 -11.70073 -10.97232 -10.68869 -10.66288 -10.55682 -10.15496 -9.54505 -8.24339 -6.39219 -0.65291 0.16704 1.10491 1.20531 1.36375 1.39146 1.50149 1.57416 2.25404 2.40141 2.65728 3.00222 3.05810 3.36564 3.54114 3.59839 3.70460 3.77518 3.80674 3.87117 3.98010 4.26434 4.27652 4.29482 4.45076 4.53243 4.55223 4.62481 4.68721 4.80756 4.83740 4.84012 4.89206 4.93731 5.01719 5.04180 5.10507 5.14724 5.19167 5.19507 5.40445 5.48027 5.50244 5.50457 5.76807 6.01718 6.28736 6.56080 6.69704 6.79374 7.17566 7.34183 8.83659 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.002314 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.968073 B =12099.149847 C =12890.133885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.075 4.075 6 C -0.093 4.093 7 C 0.052 3.948 8 C 0.519 3.481 9 O -0.509 6.509 10 O -0.327 6.327 11 C 0.077 3.923 12 H 0.125 0.875 13 C -0.157 4.157 14 C 0.501 3.499 15 O -0.577 6.577 16 N -0.600 5.600 17 C 0.066 3.934 18 C 0.258 3.742 19 C -0.543 4.543 20 H 0.058 0.942 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.283 1.283 27 N -0.470 5.470 28 C 0.090 3.910 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.188 0.812 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.032 0.968 45 H -0.002 1.002 46 H 0.268 0.732 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 -7.726 -29.992 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 C -0.207 4.207 4 C -0.086 4.086 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.083 4.083 8 C 0.363 3.637 9 O -0.398 6.398 10 O -0.242 6.242 11 C 0.018 3.982 12 H 0.143 0.857 13 C -0.215 4.215 14 C 0.288 3.712 15 O -0.457 6.457 16 N -0.332 5.332 17 C -0.075 4.075 18 C 0.138 3.862 19 C -0.581 4.581 20 H 0.076 0.924 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.209 1.209 27 N -0.180 5.180 28 C -0.071 4.071 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.205 0.795 37 H 0.183 0.817 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.050 0.950 45 H 0.016 0.984 46 H 0.077 0.923 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.231 -7.057 -28.975 29.996 hybrid contribution -0.175 0.031 0.666 0.690 sum -3.406 -7.026 -28.308 29.365 Atomic orbital electron populations 1.21905 0.93245 1.02392 1.03017 1.20247 0.96622 0.96250 0.93723 1.21914 1.01217 0.94524 1.03014 1.21619 0.94951 0.95229 0.96816 1.21990 0.94655 0.93659 0.99722 1.22312 0.97948 1.00573 0.90461 1.20005 1.01536 0.95999 0.90769 1.21381 0.76726 0.81534 0.84063 1.90774 1.36122 1.25180 1.87735 1.86822 1.68247 1.54967 1.14161 1.22665 1.01894 0.91797 0.81806 0.85744 1.22170 0.98285 0.96686 1.04315 1.20601 0.79107 0.87642 0.83883 1.90671 1.49414 1.25201 1.80393 1.48066 1.47016 1.21950 1.16213 1.22168 0.96745 0.83976 1.04645 1.18880 0.96778 0.88395 0.82193 1.21719 1.14373 1.17518 1.04532 0.92366 1.25895 0.98893 0.94488 0.99993 1.70065 1.38582 1.21532 1.26637 0.85325 0.78576 0.78194 0.78455 1.18879 1.19290 1.20889 1.67605 1.08199 1.06911 1.35328 1.23069 0.97825 0.99262 0.86967 0.92770 0.90321 0.92525 0.87438 0.92815 0.92725 0.90267 0.79466 0.81725 0.88583 0.88134 0.92036 0.90883 0.89910 0.89029 0.95017 0.98400 0.92340 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.01 71.98 0.65 -0.41 16 2 C -0.05 -0.36 3.11 -11.54 -0.04 -0.40 16 3 C -0.15 -1.16 9.01 71.98 0.65 -0.51 16 4 C -0.08 -1.13 4.80 -19.69 -0.09 -1.23 16 5 C -0.08 -0.90 9.79 22.45 0.22 -0.68 16 6 C -0.09 -1.72 9.63 22.62 0.22 -1.50 16 7 C 0.05 1.44 6.75 41.89 0.28 1.72 16 8 C 0.52 17.04 7.92 70.43 0.56 17.60 16 9 O -0.51 -16.10 15.58 20.08 0.31 -15.78 16 10 O -0.33 -12.78 9.28 -49.64 -0.46 -13.24 16 11 C 0.08 2.75 2.14 29.85 0.06 2.81 16 12 H 0.13 3.86 6.31 -2.39 -0.02 3.84 16 13 C -0.16 -4.62 9.19 71.98 0.66 -3.95 16 14 C 0.50 23.40 6.95 87.66 0.61 24.01 16 15 O -0.58 -33.48 16.13 15.22 0.25 -33.24 16 16 N -0.60 -26.96 2.86 -851.14 -2.43 -29.39 16 17 C 0.07 2.07 9.79 127.77 1.25 3.32 16 18 C 0.26 14.39 5.18 85.63 0.44 14.83 16 19 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 20 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 21 C 0.01 0.37 5.46 84.65 0.46 0.83 16 22 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 23 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 27 N -0.47 -13.92 10.12 -184.94 -1.87 -15.79 16 28 C 0.09 1.84 9.90 84.82 0.84 2.68 16 29 H 0.05 0.48 7.41 -2.39 -0.02 0.46 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 0.34 7.92 -2.39 -0.02 0.32 16 33 H 0.05 0.52 7.41 -2.38 -0.02 0.50 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.19 0.63 8.00 -2.91 -0.02 0.61 16 37 H 0.17 2.51 7.64 -2.91 -0.02 2.49 16 38 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.10 2.66 6.33 -2.39 -0.02 2.64 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 43 H 0.09 2.26 4.92 -2.39 -0.01 2.25 16 44 H 0.03 1.76 8.07 -2.38 -0.02 1.74 16 45 H 0.00 -0.14 7.36 -2.39 -0.02 -0.16 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 47 H 0.17 2.93 7.12 -2.91 -0.02 2.91 16 Total: -1.00 -84.16 395.76 6.10 -78.07 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.97 Total: 10.99 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 7.02 Total: 27.66 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.02 Total: -101.88 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: 0.10 Total: -62.26 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -84.16 6.10 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811264115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.167 kcal (2) G-P(sol) polarization free energy of solvation -84.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds