Wall clock time and date at job start Tue Mar 31 2020 18:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47536 * 2 1 4 4 C 1.50701 * 109.47096 * 240.00161 * 2 1 3 5 5 O 1.21290 * 120.00172 * 252.87853 * 4 2 1 6 6 N 1.34781 * 120.00157 * 72.87798 * 4 2 1 7 7 C 1.46502 * 119.99600 * 356.34021 * 6 4 2 8 8 C 1.50703 * 109.47032 * 95.70557 * 7 6 4 9 9 H 1.07997 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99764 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00549 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99832 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46990 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47342 * 119.99780 * 12 10 8 15 15 H 1.48497 * 109.47051 * 239.99966 * 12 10 8 16 16 C 1.39927 * 120.00090 * 176.06977 * 6 4 2 17 17 C 1.38868 * 120.06984 * 6.63911 * 16 6 4 18 18 C 1.38106 * 119.92862 * 179.76670 * 17 16 6 19 19 C 1.38291 * 120.06943 * 0.49238 * 18 17 16 20 20 C 1.38282 * 120.13791 * 359.76241 * 19 18 17 21 21 C 1.38110 * 120.07265 * 0.02562 * 20 19 18 22 22 N 1.46895 * 109.47553 * 120.00346 * 2 1 3 23 23 C 1.46900 * 111.00161 * 58.94633 * 22 2 1 24 24 C 1.46907 * 110.99584 * 294.99908 * 22 2 1 25 25 C 1.53001 * 109.46688 * 189.99809 * 24 22 2 26 26 C 1.50703 * 109.46774 * 180.02562 * 25 24 22 27 27 O 1.20830 * 120.00218 * 359.97438 * 26 25 24 28 28 O 1.34236 * 120.00050 * 180.02562 * 26 25 24 29 29 H 1.09004 * 109.47089 * 308.18558 * 1 2 3 30 30 H 1.09005 * 109.47411 * 68.17979 * 1 2 3 31 31 H 1.09002 * 109.47386 * 188.18250 * 1 2 3 32 32 H 1.09002 * 109.47143 * 215.70082 * 7 6 4 33 33 H 1.08994 * 109.47406 * 335.70159 * 7 6 4 34 34 H 0.96999 * 120.00650 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.03696 * 359.97438 * 17 16 6 36 36 H 1.08003 * 119.97241 * 180.25572 * 18 17 16 37 37 H 1.07998 * 119.93169 * 179.74491 * 19 18 17 38 38 H 1.08005 * 119.95794 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.03404 * 179.97438 * 21 20 19 40 40 H 1.09008 * 109.46434 * 60.00572 * 23 22 2 41 41 H 1.09002 * 109.47330 * 180.02562 * 23 22 2 42 42 H 1.08993 * 109.47604 * 300.00819 * 23 22 2 43 43 H 1.08995 * 109.47347 * 309.99325 * 24 22 2 44 44 H 1.08994 * 109.47261 * 70.00113 * 24 22 2 45 45 H 1.08997 * 109.47329 * 299.99713 * 25 24 22 46 46 H 1.08996 * 109.47528 * 60.00261 * 25 24 22 47 47 H 0.96693 * 116.99949 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5260 -1.8141 -1.1345 6 7 1.9329 -0.1193 -2.4377 7 6 1.2647 1.1782 -2.5651 8 6 2.2935 2.2789 -2.5278 9 1 3.3402 2.0362 -2.4196 10 6 1.8983 3.5956 -2.6319 11 7 0.6236 3.8912 -2.7642 12 14 3.1735 4.9599 -2.5863 13 1 4.5266 4.3678 -2.4319 14 1 3.1137 5.7359 -3.8510 15 1 2.8941 5.8606 -1.4393 16 6 2.4730 -0.7422 -3.5683 17 6 2.9883 -2.0283 -3.4747 18 6 3.5162 -2.6422 -4.5935 19 6 3.5413 -1.9737 -5.8038 20 6 3.0337 -0.6909 -5.8991 21 6 2.5004 -0.0731 -4.7849 22 7 2.0197 -0.6925 1.1993 23 6 1.5283 -2.0761 1.2459 24 6 1.6487 0.0392 2.4180 25 6 2.3790 -0.5663 3.6185 26 6 1.9980 0.1839 4.8687 27 8 1.2223 1.1082 4.8060 28 8 2.5210 -0.1742 6.0520 29 1 -0.3633 0.6353 0.8078 30 1 -0.3634 0.3820 -0.9541 31 1 -0.3634 -1.0172 0.1463 32 1 0.7248 1.2175 -3.5112 33 1 0.5634 1.3083 -1.7409 34 1 0.3456 4.8176 -2.8378 35 1 2.9732 -2.5492 -2.5287 36 1 3.9134 -3.6440 -4.5224 37 1 3.9584 -2.4543 -6.6764 38 1 3.0551 -0.1713 -6.8457 39 1 2.1045 0.9289 -4.8599 40 1 1.8762 -2.6150 0.3646 41 1 1.9053 -2.5656 2.1439 42 1 0.4385 -2.0743 1.2639 43 1 1.9298 1.0869 2.3125 44 1 0.5723 -0.0345 2.5726 45 1 2.0979 -1.6141 3.7241 46 1 3.4554 -0.4926 3.4640 47 1 2.2470 0.3369 6.8258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817733609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:53 Heat of formation + Delta-G solvation = -62.593010 kcal Electronic energy + Delta-G solvation = -29660.550135 eV Core-core repulsion = 25616.808075 eV Total energy + Delta-G solvation = -4043.742060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62914 -40.30604 -38.44119 -36.97515 -36.22005 -35.38960 -32.74730 -32.47901 -30.27911 -30.09606 -28.72133 -27.37928 -26.47043 -24.93962 -23.37624 -22.86323 -21.89317 -21.03911 -20.12017 -18.85776 -18.23175 -17.11598 -16.88874 -16.62812 -16.36434 -16.33319 -15.54815 -15.16851 -14.77503 -14.65097 -14.55824 -14.19292 -13.66339 -13.56322 -13.37691 -13.02751 -12.92334 -12.80628 -12.60491 -12.32870 -12.13562 -12.06892 -11.86593 -11.69938 -11.54788 -11.32009 -11.21401 -10.94543 -10.92618 -10.79972 -10.71005 -10.63831 -10.50646 -10.27531 -10.03859 -9.17663 -8.70631 -8.55125 -8.31598 -8.03299 -7.20019 -6.29020 -4.37235 1.87827 2.03644 2.06689 2.78278 3.16403 3.17656 3.27252 3.32718 3.53623 4.22701 4.29574 4.51740 4.68559 4.89775 4.91527 5.05255 5.22671 5.34161 5.41671 5.44147 5.47914 5.55832 5.62565 5.67170 5.73360 5.85115 5.89246 5.95689 6.07575 6.10488 6.14209 6.20998 6.32122 6.35694 6.47803 6.59253 6.77831 6.88572 7.02374 7.07208 7.14693 7.15792 7.22302 7.31732 7.64572 7.73061 7.83588 7.87323 8.11417 8.65168 8.78241 9.31117 10.77195 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.004093 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.353310 B = 6839.621396 C = 9091.748351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 H 0.126 0.874 4 C 0.530 3.470 5 O -0.529 6.529 6 N -0.532 5.532 7 C 0.215 3.785 8 C -0.540 4.540 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.170 3.830 17 C -0.181 4.181 18 C -0.111 4.111 19 C -0.162 4.162 20 C -0.107 4.107 21 C -0.142 4.142 22 N -0.519 5.519 23 C -0.008 4.008 24 C 0.063 3.937 25 C -0.110 4.110 26 C 0.480 3.520 27 O -0.515 6.515 28 O -0.520 6.520 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.267 0.733 35 H 0.179 0.821 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -9.593 7.947 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.040 4.040 3 H 0.143 0.857 4 C 0.320 3.680 5 O -0.410 6.410 6 N -0.250 5.250 7 C 0.097 3.903 8 C -0.578 4.578 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.723 3.277 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.074 3.926 17 C -0.200 4.200 18 C -0.129 4.129 19 C -0.181 4.181 20 C -0.126 4.126 21 C -0.162 4.162 22 N -0.242 5.242 23 C -0.155 4.155 24 C -0.065 4.065 25 C -0.148 4.148 26 C 0.322 3.678 27 O -0.402 6.402 28 O -0.332 6.332 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.124 0.876 46 H 0.134 0.866 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.474 -9.918 7.660 12.618 hybrid contribution -0.431 1.548 0.453 1.670 sum 1.043 -8.370 8.113 11.703 Atomic orbital electron populations 1.22586 0.95218 1.02412 1.04709 1.21593 0.94406 0.99965 0.87994 0.85666 1.20403 0.77983 0.85222 0.84363 1.90097 1.45774 1.20394 1.84725 1.45965 1.52150 1.22052 1.04831 1.20004 0.93535 0.76880 0.99923 1.21418 0.93880 0.90454 1.52083 0.91723 1.24898 0.95475 0.98670 0.94410 1.69912 1.14563 1.19487 1.48636 0.86449 0.81708 0.81624 0.77870 1.19508 1.20728 1.20720 1.18068 0.95567 0.92030 0.86963 1.22766 1.00408 0.94719 1.02098 1.21015 0.99839 0.99296 0.92794 1.20980 1.03667 0.95829 0.97642 1.20863 0.98843 0.95013 0.97840 1.21156 1.02565 1.01099 0.91421 1.61900 1.59402 1.02584 1.00322 1.23060 0.97463 0.89948 1.05030 1.21893 0.97861 0.98811 0.87912 1.21334 1.04627 1.00561 0.88279 1.23566 0.77161 0.82056 0.85006 1.90753 1.33580 1.29071 1.86834 1.84544 1.68526 1.61583 1.18520 0.91302 0.89650 0.92067 0.93846 0.92155 0.92363 0.80482 0.86890 0.87268 0.86597 0.84263 0.86908 0.92186 0.95871 0.89460 0.93516 0.87562 0.86579 0.73303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.07 37.15 0.30 -2.66 16 2 C 0.07 1.22 1.93 -68.87 -0.13 1.09 16 3 H 0.13 2.38 7.42 -51.93 -0.39 2.00 16 4 C 0.53 10.27 6.79 -10.98 -0.07 10.20 16 5 O -0.53 -10.38 9.86 5.55 0.05 -10.33 16 6 N -0.53 -11.02 2.69 -114.73 -0.31 -11.33 16 7 C 0.22 4.82 3.97 -5.19 -0.02 4.80 16 8 C -0.54 -13.39 8.59 -34.44 -0.30 -13.69 16 9 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -23.30 13.29 55.43 0.74 -22.56 16 12 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 C 0.17 3.47 6.47 -83.70 -0.54 2.93 16 17 C -0.18 -3.43 9.05 -39.40 -0.36 -3.78 16 18 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 16 19 C -0.16 -2.55 10.04 -39.55 -0.40 -2.95 16 20 C -0.11 -1.81 10.04 -39.61 -0.40 -2.20 16 21 C -0.14 -2.80 9.02 -39.39 -0.36 -3.15 16 22 N -0.52 -7.72 4.63 -236.29 -1.09 -8.82 16 23 C -0.01 -0.11 8.60 60.06 0.52 0.41 16 24 C 0.06 0.83 3.70 -3.82 -0.01 0.82 16 25 C -0.11 -1.14 5.74 -27.88 -0.16 -1.30 16 26 C 0.48 5.29 8.33 36.01 0.30 5.59 16 27 O -0.51 -7.44 16.74 -18.75 -0.31 -7.75 16 28 O -0.52 -4.34 13.42 -39.27 -0.53 -4.87 16 29 H 0.07 1.00 7.18 -51.93 -0.37 0.63 16 30 H 0.08 1.45 5.54 -51.93 -0.29 1.16 16 31 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 32 H 0.04 1.03 6.87 -51.93 -0.36 0.68 16 33 H 0.06 1.34 4.11 -51.93 -0.21 1.13 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.18 3.46 4.53 -56.21 -0.25 3.21 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.14 2.93 6.13 -52.49 -0.32 2.61 16 40 H 0.11 1.77 5.02 -51.92 -0.26 1.51 16 41 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 42 H 0.02 0.30 6.11 -51.93 -0.32 -0.02 16 43 H 0.09 1.25 7.96 -51.93 -0.41 0.84 16 44 H 0.05 0.62 7.09 -51.93 -0.37 0.25 16 45 H 0.11 0.94 6.47 -51.93 -0.34 0.60 16 46 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.41 1.74 9.10 45.56 0.41 2.16 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -29.26 371.55 -8.35 -37.60 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.35 Total: 11.83 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.13 Total: -4.47 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.67 Total: -42.71 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.79 Total: -22.95 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.26 -8.35 -37.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817733609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.990 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds