Wall clock time and date at job start Tue Mar 31 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47536 * 2 1 4 4 C 1.50701 * 109.47096 * 240.00161 * 2 1 3 5 5 O 1.21290 * 120.00172 * 252.87853 * 4 2 1 6 6 N 1.34781 * 120.00157 * 72.87798 * 4 2 1 7 7 C 1.46502 * 119.99600 * 356.34021 * 6 4 2 8 8 C 1.50703 * 109.47032 * 95.70557 * 7 6 4 9 9 H 1.07997 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99764 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00549 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99832 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46990 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47342 * 119.99780 * 12 10 8 15 15 H 1.48497 * 109.47051 * 239.99966 * 12 10 8 16 16 C 1.39927 * 120.00090 * 176.06977 * 6 4 2 17 17 C 1.38868 * 120.06984 * 6.63911 * 16 6 4 18 18 C 1.38106 * 119.92862 * 179.76670 * 17 16 6 19 19 C 1.38291 * 120.06943 * 0.49238 * 18 17 16 20 20 C 1.38282 * 120.13791 * 359.76241 * 19 18 17 21 21 C 1.38110 * 120.07265 * 0.02562 * 20 19 18 22 22 N 1.46895 * 109.47553 * 120.00346 * 2 1 3 23 23 C 1.46900 * 111.00161 * 58.94633 * 22 2 1 24 24 C 1.46907 * 110.99584 * 294.99908 * 22 2 1 25 25 C 1.53001 * 109.46688 * 189.99809 * 24 22 2 26 26 C 1.50703 * 109.46774 * 180.02562 * 25 24 22 27 27 O 1.20830 * 120.00218 * 359.97438 * 26 25 24 28 28 O 1.34236 * 120.00050 * 180.02562 * 26 25 24 29 29 H 1.09004 * 109.47089 * 308.18558 * 1 2 3 30 30 H 1.09005 * 109.47411 * 68.17979 * 1 2 3 31 31 H 1.09002 * 109.47386 * 188.18250 * 1 2 3 32 32 H 1.09002 * 109.47143 * 215.70082 * 7 6 4 33 33 H 1.08994 * 109.47406 * 335.70159 * 7 6 4 34 34 H 0.96999 * 120.00650 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.03696 * 359.97438 * 17 16 6 36 36 H 1.08003 * 119.97241 * 180.25572 * 18 17 16 37 37 H 1.07998 * 119.93169 * 179.74491 * 19 18 17 38 38 H 1.08005 * 119.95794 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.03404 * 179.97438 * 21 20 19 40 40 H 1.09008 * 109.46434 * 60.00572 * 23 22 2 41 41 H 1.09002 * 109.47330 * 180.02562 * 23 22 2 42 42 H 1.08993 * 109.47604 * 300.00819 * 23 22 2 43 43 H 1.08995 * 109.47347 * 309.99325 * 24 22 2 44 44 H 1.08994 * 109.47261 * 70.00113 * 24 22 2 45 45 H 1.08997 * 109.47329 * 299.99713 * 25 24 22 46 46 H 1.08996 * 109.47528 * 60.00261 * 25 24 22 47 47 H 0.96693 * 116.99949 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5260 -1.8141 -1.1345 6 7 1.9329 -0.1193 -2.4377 7 6 1.2647 1.1782 -2.5651 8 6 2.2935 2.2789 -2.5278 9 1 3.3402 2.0362 -2.4196 10 6 1.8983 3.5956 -2.6319 11 7 0.6236 3.8912 -2.7642 12 14 3.1735 4.9599 -2.5863 13 1 4.5266 4.3678 -2.4319 14 1 3.1137 5.7359 -3.8510 15 1 2.8941 5.8606 -1.4393 16 6 2.4730 -0.7422 -3.5683 17 6 2.9883 -2.0283 -3.4747 18 6 3.5162 -2.6422 -4.5935 19 6 3.5413 -1.9737 -5.8038 20 6 3.0337 -0.6909 -5.8991 21 6 2.5004 -0.0731 -4.7849 22 7 2.0197 -0.6925 1.1993 23 6 1.5283 -2.0761 1.2459 24 6 1.6487 0.0392 2.4180 25 6 2.3790 -0.5663 3.6185 26 6 1.9980 0.1839 4.8687 27 8 1.2223 1.1082 4.8060 28 8 2.5210 -0.1742 6.0520 29 1 -0.3633 0.6353 0.8078 30 1 -0.3634 0.3820 -0.9541 31 1 -0.3634 -1.0172 0.1463 32 1 0.7248 1.2175 -3.5112 33 1 0.5634 1.3083 -1.7409 34 1 0.3456 4.8176 -2.8378 35 1 2.9732 -2.5492 -2.5287 36 1 3.9134 -3.6440 -4.5224 37 1 3.9584 -2.4543 -6.6764 38 1 3.0551 -0.1713 -6.8457 39 1 2.1045 0.9289 -4.8599 40 1 1.8762 -2.6150 0.3646 41 1 1.9053 -2.5656 2.1439 42 1 0.4385 -2.0743 1.2639 43 1 1.9298 1.0869 2.3125 44 1 0.5723 -0.0345 2.5726 45 1 2.0979 -1.6141 3.7241 46 1 3.4554 -0.4926 3.4640 47 1 2.2470 0.3369 6.8258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817733609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:52 Heat of formation + Delta-G solvation = -80.985217 kcal Electronic energy + Delta-G solvation = -29661.347681 eV Core-core repulsion = 25616.808075 eV Total energy + Delta-G solvation = -4044.539606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04534 -41.24951 -39.75933 -38.22757 -37.08021 -37.00344 -34.63087 -33.62958 -31.68928 -31.32763 -30.11516 -29.13439 -27.56798 -26.22661 -25.13169 -24.12847 -23.22598 -22.28788 -21.20737 -20.27998 -19.10558 -18.80665 -18.42573 -17.92649 -17.65855 -17.24684 -16.96505 -16.44832 -16.38686 -16.16901 -15.73617 -15.56065 -14.97528 -14.80796 -14.73178 -14.37910 -14.27722 -14.07788 -13.95726 -13.75282 -13.57514 -13.28408 -13.03415 -13.00429 -12.94241 -12.84898 -12.54590 -12.42400 -12.28201 -12.17331 -12.04167 -11.93572 -11.88814 -11.72472 -11.62628 -10.84462 -10.64262 -9.98626 -9.71874 -9.26320 -8.73998 -8.23294 -6.38845 0.46203 0.62952 1.21605 1.36843 1.40931 1.50338 1.65381 1.89300 2.18797 2.38342 3.05298 3.07093 3.11517 3.43383 3.73122 3.99110 4.03190 4.12373 4.19586 4.24298 4.43626 4.43780 4.45269 4.53662 4.58866 4.61338 4.67693 4.70244 4.73141 4.85176 4.87150 4.91102 4.99283 5.05091 5.22408 5.26522 5.37998 5.49716 5.63019 5.64944 5.66541 5.76338 5.85042 5.90486 5.96045 6.09505 6.37279 6.49422 6.73888 7.00793 7.18808 7.32824 8.80293 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.004093 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.353310 B = 6839.621396 C = 9091.748351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.523 3.477 5 O -0.532 6.532 6 N -0.539 5.539 7 C 0.232 3.768 8 C -0.542 4.542 9 H 0.047 0.953 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.950 3.050 13 H -0.275 1.275 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.139 3.861 17 C -0.195 4.195 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.166 4.166 22 N -0.524 5.524 23 C -0.005 4.005 24 C 0.066 3.934 25 C -0.104 4.104 26 C 0.489 3.511 27 O -0.555 6.555 28 O -0.511 6.511 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.269 0.731 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -11.222 8.269 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.035 4.035 3 H 0.118 0.882 4 C 0.314 3.686 5 O -0.413 6.413 6 N -0.258 5.258 7 C 0.113 3.887 8 C -0.580 4.580 9 H 0.065 0.935 10 C -0.170 4.170 11 N -0.552 5.552 12 Si 0.776 3.224 13 H -0.199 1.199 14 H -0.202 1.202 15 H -0.202 1.202 16 C 0.044 3.956 17 C -0.214 4.214 18 C -0.124 4.124 19 C -0.170 4.170 20 C -0.124 4.124 21 C -0.186 4.186 22 N -0.248 5.248 23 C -0.152 4.152 24 C -0.062 4.062 25 C -0.141 4.141 26 C 0.333 3.667 27 O -0.446 6.446 28 O -0.324 6.324 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.188 0.812 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 2.658 -11.574 8.008 14.323 hybrid contribution -0.736 1.945 0.344 2.108 sum 1.923 -9.629 8.351 12.890 Atomic orbital electron populations 1.22481 0.94135 1.03371 1.03935 1.21423 0.95153 0.98559 0.88327 0.88194 1.20798 0.77875 0.85360 0.84525 1.90104 1.45853 1.20436 1.84872 1.45930 1.52602 1.21532 1.05772 1.19638 0.92934 0.77444 0.98730 1.21480 0.93394 0.91443 1.51677 0.93487 1.25500 0.96938 1.00395 0.94217 1.69982 1.15773 1.19968 1.49510 0.85614 0.79432 0.79313 0.78034 1.19938 1.20189 1.20175 1.18397 0.97003 0.93078 0.87117 1.22790 1.01379 0.94229 1.03036 1.21412 0.98371 1.00525 0.92114 1.21408 1.01972 0.94975 0.98678 1.21200 0.97624 0.95760 0.97793 1.21119 1.04389 1.00516 0.92618 1.61904 1.59634 1.03273 0.99972 1.23024 0.97954 0.88809 1.05402 1.21847 0.98234 0.97931 0.88196 1.21267 1.04677 1.01352 0.86836 1.23557 0.76233 0.81140 0.85758 1.90751 1.35549 1.30862 1.87472 1.84493 1.67819 1.61576 1.18542 0.90387 0.91518 0.90588 0.95898 0.92033 0.92150 0.81238 0.83636 0.83256 0.84088 0.86798 0.89039 0.89267 0.95147 0.91341 0.93585 0.85272 0.85683 0.71070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 8.07 71.98 0.58 -5.16 16 2 C 0.08 2.72 1.93 44.17 0.09 2.81 16 3 H 0.10 4.04 7.42 -2.39 -0.02 4.02 16 4 C 0.52 21.00 6.79 87.66 0.60 21.60 16 5 O -0.53 -21.23 9.86 -3.06 -0.03 -21.26 16 6 N -0.54 -23.48 2.69 -635.29 -1.71 -25.19 16 7 C 0.23 11.02 3.97 85.63 0.34 11.36 16 8 C -0.54 -28.08 8.59 25.60 0.22 -27.86 16 9 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 10 C 0.03 1.60 5.46 84.65 0.46 2.06 16 11 N -0.91 -49.20 13.29 21.45 0.28 -48.92 16 12 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 16 C 0.14 5.87 6.47 38.15 0.25 6.12 16 17 C -0.19 -7.36 9.05 22.39 0.20 -7.16 16 18 C -0.11 -3.23 10.04 22.25 0.22 -3.01 16 19 C -0.15 -4.30 10.04 22.29 0.22 -4.07 16 20 C -0.11 -3.42 10.04 22.25 0.22 -3.19 16 21 C -0.17 -6.72 9.02 22.39 0.20 -6.52 16 22 N -0.52 -15.46 4.63 -901.48 -4.18 -19.64 16 23 C -0.01 -0.13 8.60 127.69 1.10 0.97 16 24 C 0.07 1.69 3.70 86.30 0.32 2.01 16 25 C -0.10 -1.96 5.74 29.85 0.17 -1.79 16 26 C 0.49 10.02 8.33 71.24 0.59 10.61 16 27 O -0.56 -15.75 16.74 21.95 0.37 -15.38 16 28 O -0.51 -7.30 13.42 -51.48 -0.69 -8.00 16 29 H 0.08 2.31 7.18 -2.39 -0.02 2.29 16 30 H 0.07 2.37 5.54 -2.38 -0.01 2.36 16 31 H 0.08 2.16 5.97 -2.39 -0.01 2.14 16 32 H 0.02 1.17 6.87 -2.39 -0.02 1.16 16 33 H 0.06 2.90 4.11 -2.39 -0.01 2.89 16 34 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.17 6.66 4.53 -61.97 -0.28 6.38 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.11 5.12 6.13 -2.91 -0.02 5.10 16 40 H 0.09 2.81 5.02 -2.39 -0.01 2.80 16 41 H 0.09 1.74 6.30 -2.39 -0.02 1.73 16 42 H 0.03 0.73 6.11 -2.39 -0.01 0.72 16 43 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 44 H 0.05 1.19 7.09 -2.39 -0.02 1.17 16 45 H 0.13 1.86 6.47 -2.39 -0.02 1.85 16 46 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.43 2.65 9.10 -74.06 -0.67 1.98 16 Total: -1.00 -64.98 371.55 1.94 -63.04 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.08 Total: 32.54 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.79 Total: -1.22 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -5.60 Total: -93.74 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.35 Total: -44.64 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.98 1.94 -63.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817733609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.947 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds