Wall clock time and date at job start Tue Mar 31 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 120.00049 * 2 1 4 4 N 1.34777 * 120.00112 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99946 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.46806 * 174.02052 * 6 5 4 8 8 C 1.46902 * 110.99951 * 197.54070 * 7 6 5 9 9 C 1.50700 * 109.47312 * 169.99925 * 8 7 6 10 10 C 1.38638 * 119.74834 * 269.72944 * 9 8 7 11 11 C 1.37617 * 120.24662 * 179.72109 * 10 9 8 12 12 C 1.40721 * 119.74434 * 0.56947 * 11 10 9 13 13 C 1.41391 * 120.24227 * 179.68473 * 12 11 10 14 14 H 1.07995 * 120.00668 * 29.23692 * 13 12 11 15 15 C 1.39953 * 119.99804 * 209.23690 * 13 12 11 16 16 N 1.30815 * 119.99682 * 14.06840 * 15 13 12 17 17 Si 1.86800 * 119.99869 * 194.06535 * 15 13 12 18 18 H 1.48495 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46538 * 120.00189 * 17 15 13 20 20 H 1.48503 * 109.47111 * 239.99707 * 17 15 13 21 21 C 1.40718 * 119.51047 * 359.70311 * 12 11 10 22 22 C 1.37615 * 119.74455 * 359.97438 * 21 12 11 23 23 C 1.46897 * 111.00332 * 73.58476 * 7 6 5 24 24 H 1.08995 * 109.47280 * 160.81530 * 23 7 6 25 25 C 1.53002 * 109.46870 * 40.82267 * 23 7 6 26 26 C 1.50700 * 109.47280 * 280.82375 * 23 7 6 27 27 O 1.20825 * 119.99846 * 349.94211 * 26 23 7 28 28 O 1.34232 * 119.99767 * 169.67202 * 26 23 7 29 29 H 1.09003 * 109.46996 * 270.00739 * 1 2 3 30 30 H 1.08992 * 109.47329 * 30.00538 * 1 2 3 31 31 H 1.09003 * 109.47065 * 150.01138 * 1 2 3 32 32 H 0.97006 * 119.99846 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47233 * 60.00246 * 5 4 2 34 34 H 1.08999 * 109.46801 * 299.99382 * 5 4 2 35 35 H 1.08999 * 109.46714 * 54.02291 * 6 5 4 36 36 H 1.08996 * 109.47042 * 294.01849 * 6 5 4 37 37 H 1.08994 * 109.47038 * 290.00306 * 8 7 6 38 38 H 1.09004 * 109.46764 * 49.99881 * 8 7 6 39 39 H 1.08001 * 119.87545 * 359.97438 * 10 9 8 40 40 H 1.07995 * 120.13017 * 180.28029 * 11 10 9 41 41 H 0.97005 * 120.00024 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.12312 * 179.97438 * 21 12 11 43 43 H 1.07993 * 119.87645 * 179.97438 * 22 21 12 44 44 H 1.09008 * 109.46669 * 299.99993 * 25 23 7 45 45 H 1.08995 * 109.47293 * 59.99777 * 25 23 7 46 46 H 1.08994 * 109.47551 * 180.02562 * 25 23 7 47 47 H 0.96697 * 116.99664 * 180.27456 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6097 0.0010 7 7 5.6178 -2.6121 -0.1427 8 6 6.1036 -3.9342 -0.5602 9 6 7.5605 -3.8392 -0.9336 10 6 7.9181 -3.5552 -2.2426 11 6 9.2454 -3.4605 -2.5936 12 6 10.2412 -3.6649 -1.6205 13 6 11.6081 -3.5767 -1.9710 14 1 11.9180 -2.9298 -2.7784 15 6 12.5597 -4.3277 -1.2716 16 7 12.1766 -5.3055 -0.4916 17 14 14.3768 -3.9337 -1.4520 18 1 14.5453 -2.7911 -2.3853 19 1 14.9397 -3.5759 -0.1252 20 1 15.0898 -5.1209 -1.9883 21 6 9.8665 -3.9582 -0.2963 22 6 8.5330 -4.0415 0.0335 23 6 6.2698 -2.1803 1.1008 24 1 7.3102 -2.5052 1.0973 25 6 5.5461 -2.8001 2.2979 26 6 6.2130 -0.6778 1.2023 27 8 5.8511 -0.0216 0.2545 28 8 6.5591 -0.0690 2.3474 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5137 32 1 1.6959 -2.0073 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0095 -0.6536 -0.8889 35 1 3.7081 -3.1532 -0.8310 36 1 3.8823 -3.0919 0.9394 37 1 5.9842 -4.6410 0.2608 38 1 5.5295 -4.2769 -1.4211 39 1 7.1522 -3.4038 -2.9887 40 1 9.5218 -3.2347 -3.6129 41 1 12.8362 -5.8263 -0.0071 42 1 10.6226 -4.1174 0.4584 43 1 8.2431 -4.2669 1.0490 44 1 4.5056 -2.4753 2.3013 45 1 5.5872 -3.8868 2.2244 46 1 6.0295 -2.4794 3.2206 47 1 6.5026 0.8962 2.3658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819780250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:21 Heat of formation + Delta-G solvation = -94.243961 kcal Electronic energy + Delta-G solvation = -29241.062688 eV Core-core repulsion = 25195.948140 eV Total energy + Delta-G solvation = -4045.114548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.60428 -39.49175 -38.38190 -37.08629 -35.74911 -34.83093 -33.72018 -31.34637 -31.16926 -29.87093 -29.25975 -28.06299 -26.07088 -25.07920 -23.14160 -22.46522 -21.13531 -20.76431 -20.17300 -19.32026 -17.79576 -17.32058 -17.04610 -16.83829 -16.52694 -15.79884 -15.36819 -15.32632 -15.10529 -14.60664 -14.37415 -13.92760 -13.90176 -13.54547 -13.41217 -13.14865 -12.85802 -12.82057 -12.46846 -12.33592 -12.26265 -12.02000 -11.95353 -11.65277 -11.55586 -11.49287 -11.20379 -11.06406 -10.97041 -10.79366 -10.55577 -10.40714 -10.10508 -9.93704 -9.60253 -9.41891 -9.21191 -9.09628 -8.17698 -7.49604 -7.30871 -6.77077 -4.39379 2.49669 2.55908 2.60844 2.97103 3.01920 3.06885 3.12437 3.16763 3.22462 3.92616 4.18348 4.61392 4.67145 4.84000 4.88254 4.97111 5.03945 5.11683 5.17407 5.30503 5.36772 5.54060 5.57901 5.63280 5.67637 5.73969 5.83179 5.95089 5.99708 6.13400 6.24358 6.26186 6.34335 6.37064 6.73299 6.88918 7.01776 7.07277 7.18089 7.23821 7.31891 7.40029 7.57589 7.81006 8.02111 8.04400 8.13871 8.18641 8.26787 8.60112 8.86865 8.92959 10.18753 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.002601 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.130962 B =10763.773012 C =11020.412109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.543 6.543 4 N -0.733 5.733 5 C 0.122 3.878 6 C 0.030 3.970 7 N -0.509 5.509 8 C 0.124 3.876 9 C -0.212 4.212 10 C -0.066 4.066 11 C -0.222 4.222 12 C 0.115 3.885 13 C -0.464 4.464 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.799 5.799 17 Si 0.908 3.092 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.158 4.158 22 C -0.102 4.102 23 C 0.084 3.916 24 H 0.139 0.861 25 C -0.182 4.182 26 C 0.476 3.524 27 O -0.484 6.484 28 O -0.523 6.523 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.279 0.721 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.455 1.996 6.493 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.291 3.709 3 O -0.420 6.420 4 N -0.386 5.386 5 C -0.001 4.001 6 C -0.098 4.098 7 N -0.234 5.234 8 C -0.001 4.001 9 C -0.214 4.214 10 C -0.084 4.084 11 C -0.242 4.242 12 C 0.112 3.888 13 C -0.494 4.494 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.424 5.424 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.200 1.200 21 C -0.178 4.178 22 C -0.121 4.121 23 C -0.026 4.026 24 H 0.156 0.844 25 C -0.240 4.240 26 C 0.316 3.684 27 O -0.369 6.369 28 O -0.334 6.334 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.229 0.771 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.862 2.657 5.973 18.085 hybrid contribution 0.470 -0.318 0.540 0.784 sum -16.392 2.338 6.514 17.793 Atomic orbital electron populations 1.21879 0.91957 1.04759 1.04525 1.20770 0.90447 0.83615 0.76031 1.90760 1.70773 1.31353 1.49092 1.46187 1.08169 1.08511 1.75764 1.21721 0.77576 0.96749 1.04041 1.22485 0.89508 0.96265 1.01542 1.61734 1.02984 1.29682 1.28959 1.20806 0.94768 0.86021 0.98482 1.18810 0.91743 1.16100 0.94725 1.20343 0.95200 0.98330 0.94574 1.21043 0.92625 1.12553 0.97988 1.17648 0.92850 0.87476 0.90788 1.19627 0.91369 1.22803 1.15561 0.90432 1.25885 1.01572 0.93340 0.93392 1.69805 1.36540 1.13821 1.22280 0.86271 0.81884 0.79474 0.79152 1.18438 1.19755 1.20018 1.21236 0.93953 1.05741 0.96828 1.20509 0.93746 1.01514 0.96293 1.21347 1.03869 0.87443 0.89926 0.84413 1.22392 1.01181 1.01843 0.98627 1.23411 0.73299 0.91980 0.79710 1.90746 1.41488 1.66672 1.38019 1.84513 1.81390 1.27962 1.39581 0.89089 0.89002 0.90296 0.77062 0.91976 0.89248 0.90118 0.93128 0.94953 0.90788 0.89318 0.88968 0.91001 0.86738 0.89647 0.91743 0.91063 0.90511 0.73590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.30 36.01 0.37 -0.76 16 2 C 0.50 5.97 7.94 -10.99 -0.09 5.88 16 3 O -0.54 -9.39 17.10 5.55 0.09 -9.29 16 4 N -0.73 -7.52 5.56 -60.29 -0.33 -7.85 16 5 C 0.12 1.65 4.03 -4.04 -0.02 1.63 16 6 C 0.03 0.35 4.60 -3.82 -0.02 0.34 16 7 N -0.51 -7.59 4.05 -229.48 -0.93 -8.52 16 8 C 0.12 1.93 5.04 -4.97 -0.03 1.91 16 9 C -0.21 -4.25 5.00 -104.33 -0.52 -4.77 16 10 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 11 C -0.22 -5.39 9.80 -38.87 -0.38 -5.77 16 12 C 0.11 3.00 5.53 -106.82 -0.59 2.41 16 13 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 14 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 15 C 0.08 1.87 5.18 -17.34 -0.09 1.78 16 16 N -0.80 -20.31 11.06 55.55 0.61 -19.69 16 17 Si 0.91 18.60 29.58 -169.99 -5.03 13.57 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.16 -3.93 8.66 -38.87 -0.34 -4.27 16 22 C -0.10 -2.18 7.84 -39.66 -0.31 -2.49 16 23 C 0.08 1.23 2.65 -68.87 -0.18 1.04 16 24 H 0.14 2.30 4.80 -51.93 -0.25 2.05 16 25 C -0.18 -2.04 7.96 37.16 0.30 -1.74 16 26 C 0.48 7.41 6.06 36.01 0.22 7.63 16 27 O -0.48 -8.98 13.77 -18.75 -0.26 -9.24 16 28 O -0.52 -6.62 13.01 -39.26 -0.51 -7.13 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.40 2.58 8.47 -40.82 -0.35 2.24 16 33 H 0.06 0.95 5.34 -51.93 -0.28 0.67 16 34 H 0.09 1.54 7.36 -51.93 -0.38 1.16 16 35 H 0.08 0.83 7.78 -51.93 -0.40 0.43 16 36 H 0.05 0.50 5.34 -51.93 -0.28 0.22 16 37 H 0.03 0.46 7.12 -51.93 -0.37 0.09 16 38 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 42 H 0.11 2.96 6.38 -52.49 -0.34 2.62 16 43 H 0.09 1.61 7.53 -52.49 -0.40 1.21 16 44 H 0.06 0.66 5.90 -51.92 -0.31 0.36 16 45 H 0.07 0.74 7.26 -51.93 -0.38 0.37 16 46 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 47 H 0.41 3.60 9.10 45.56 0.41 4.01 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -32.93 379.58 -8.81 -41.74 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.78 Total: 12.24 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.40 Total: -11.53 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.65 Total: -36.07 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.67 Total: -25.67 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.93 -8.81 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819780250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.503 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds