Wall clock time and date at job start Tue Mar 31 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 120.00049 * 2 1 4 4 N 1.34777 * 120.00112 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99946 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.46806 * 174.02052 * 6 5 4 8 8 C 1.46902 * 110.99951 * 197.54070 * 7 6 5 9 9 C 1.50700 * 109.47312 * 169.99925 * 8 7 6 10 10 C 1.38638 * 119.74834 * 269.72944 * 9 8 7 11 11 C 1.37617 * 120.24662 * 179.72109 * 10 9 8 12 12 C 1.40721 * 119.74434 * 0.56947 * 11 10 9 13 13 C 1.41391 * 120.24227 * 179.68473 * 12 11 10 14 14 H 1.07995 * 120.00668 * 29.23692 * 13 12 11 15 15 C 1.39953 * 119.99804 * 209.23690 * 13 12 11 16 16 N 1.30815 * 119.99682 * 14.06840 * 15 13 12 17 17 Si 1.86800 * 119.99869 * 194.06535 * 15 13 12 18 18 H 1.48495 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46538 * 120.00189 * 17 15 13 20 20 H 1.48503 * 109.47111 * 239.99707 * 17 15 13 21 21 C 1.40718 * 119.51047 * 359.70311 * 12 11 10 22 22 C 1.37615 * 119.74455 * 359.97438 * 21 12 11 23 23 C 1.46897 * 111.00332 * 73.58476 * 7 6 5 24 24 H 1.08995 * 109.47280 * 160.81530 * 23 7 6 25 25 C 1.53002 * 109.46870 * 40.82267 * 23 7 6 26 26 C 1.50700 * 109.47280 * 280.82375 * 23 7 6 27 27 O 1.20825 * 119.99846 * 349.94211 * 26 23 7 28 28 O 1.34232 * 119.99767 * 169.67202 * 26 23 7 29 29 H 1.09003 * 109.46996 * 270.00739 * 1 2 3 30 30 H 1.08992 * 109.47329 * 30.00538 * 1 2 3 31 31 H 1.09003 * 109.47065 * 150.01138 * 1 2 3 32 32 H 0.97006 * 119.99846 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47233 * 60.00246 * 5 4 2 34 34 H 1.08999 * 109.46801 * 299.99382 * 5 4 2 35 35 H 1.08999 * 109.46714 * 54.02291 * 6 5 4 36 36 H 1.08996 * 109.47042 * 294.01849 * 6 5 4 37 37 H 1.08994 * 109.47038 * 290.00306 * 8 7 6 38 38 H 1.09004 * 109.46764 * 49.99881 * 8 7 6 39 39 H 1.08001 * 119.87545 * 359.97438 * 10 9 8 40 40 H 1.07995 * 120.13017 * 180.28029 * 11 10 9 41 41 H 0.97005 * 120.00024 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.12312 * 179.97438 * 21 12 11 43 43 H 1.07993 * 119.87645 * 179.97438 * 22 21 12 44 44 H 1.09008 * 109.46669 * 299.99993 * 25 23 7 45 45 H 1.08995 * 109.47293 * 59.99777 * 25 23 7 46 46 H 1.08994 * 109.47551 * 180.02562 * 25 23 7 47 47 H 0.96697 * 116.99664 * 180.27456 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6097 0.0010 7 7 5.6178 -2.6121 -0.1427 8 6 6.1036 -3.9342 -0.5602 9 6 7.5605 -3.8392 -0.9336 10 6 7.9181 -3.5552 -2.2426 11 6 9.2454 -3.4605 -2.5936 12 6 10.2412 -3.6649 -1.6205 13 6 11.6081 -3.5767 -1.9710 14 1 11.9180 -2.9298 -2.7784 15 6 12.5597 -4.3277 -1.2716 16 7 12.1766 -5.3055 -0.4916 17 14 14.3768 -3.9337 -1.4520 18 1 14.5453 -2.7911 -2.3853 19 1 14.9397 -3.5759 -0.1252 20 1 15.0898 -5.1209 -1.9883 21 6 9.8665 -3.9582 -0.2963 22 6 8.5330 -4.0415 0.0335 23 6 6.2698 -2.1803 1.1008 24 1 7.3102 -2.5052 1.0973 25 6 5.5461 -2.8001 2.2979 26 6 6.2130 -0.6778 1.2023 27 8 5.8511 -0.0216 0.2545 28 8 6.5591 -0.0690 2.3474 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5137 32 1 1.6959 -2.0073 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0095 -0.6536 -0.8889 35 1 3.7081 -3.1532 -0.8310 36 1 3.8823 -3.0919 0.9394 37 1 5.9842 -4.6410 0.2608 38 1 5.5295 -4.2769 -1.4211 39 1 7.1522 -3.4038 -2.9887 40 1 9.5218 -3.2347 -3.6129 41 1 12.8362 -5.8263 -0.0071 42 1 10.6226 -4.1174 0.4584 43 1 8.2431 -4.2669 1.0490 44 1 4.5056 -2.4753 2.3013 45 1 5.5872 -3.8868 2.2244 46 1 6.0295 -2.4794 3.2206 47 1 6.5026 0.8962 2.3658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819780250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:19 Heat of formation + Delta-G solvation = -118.630415 kcal Electronic energy + Delta-G solvation = -29242.120164 eV Core-core repulsion = 25195.948140 eV Total energy + Delta-G solvation = -4046.172024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76655 -40.48738 -39.82393 -38.53371 -36.95750 -35.98083 -35.40650 -32.76908 -32.16367 -31.23651 -30.80196 -29.22617 -27.44820 -26.28634 -24.59820 -23.56400 -22.86346 -21.78284 -21.73518 -20.51660 -19.20383 -18.96551 -18.15205 -17.74978 -17.59487 -17.14279 -16.75996 -16.37685 -16.28977 -15.98854 -15.68596 -15.52044 -15.31787 -14.70089 -14.54747 -14.34139 -14.15940 -13.86896 -13.75310 -13.46921 -13.40050 -13.22168 -13.10917 -13.00614 -12.87169 -12.72169 -12.62817 -12.59809 -12.30697 -12.11971 -11.99148 -11.92628 -11.38198 -11.29992 -11.21306 -11.02967 -10.94756 -10.10100 -9.35771 -9.24540 -9.09863 -8.60784 -6.33463 0.92612 1.15869 1.31028 1.37191 1.46254 1.51296 1.66041 1.99734 2.21519 2.25227 2.74035 3.18537 3.74264 3.86457 3.90813 3.98278 4.05578 4.13705 4.27707 4.35091 4.38206 4.47748 4.53047 4.59947 4.64981 4.68004 4.73892 4.79039 4.84960 4.92493 5.00797 5.05580 5.12247 5.18812 5.25025 5.38047 5.44152 5.48937 5.66785 5.73592 5.93154 5.95588 6.12258 6.16443 6.26827 6.43622 6.61152 6.72635 6.96994 7.05547 7.06991 7.31943 8.37385 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.002601 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.130962 B =10763.773012 C =11020.412109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.496 3.504 3 O -0.608 6.608 4 N -0.717 5.717 5 C 0.133 3.867 6 C 0.038 3.962 7 N -0.532 5.532 8 C 0.131 3.869 9 C -0.192 4.192 10 C -0.074 4.074 11 C -0.244 4.244 12 C 0.080 3.920 13 C -0.507 4.507 14 H 0.067 0.933 15 C 0.036 3.964 16 N -0.830 5.830 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.265 1.265 21 C -0.182 4.182 22 C -0.097 4.097 23 C 0.082 3.918 24 H 0.117 0.883 25 C -0.173 4.173 26 C 0.475 3.525 27 O -0.522 6.522 28 O -0.516 6.516 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.418 0.582 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.287 0.713 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 0.537 7.873 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.285 3.715 3 O -0.490 6.490 4 N -0.371 5.371 5 C 0.009 3.991 6 C -0.089 4.089 7 N -0.257 5.257 8 C 0.005 3.995 9 C -0.194 4.194 10 C -0.093 4.093 11 C -0.263 4.263 12 C 0.078 3.922 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.178 4.178 16 N -0.456 5.456 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.201 4.201 22 C -0.115 4.115 23 C -0.028 4.028 24 H 0.134 0.866 25 C -0.231 4.231 26 C 0.317 3.683 27 O -0.410 6.410 28 O -0.329 6.329 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.256 0.744 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.706 1.157 7.374 21.073 hybrid contribution 1.139 0.202 0.150 1.167 sum -18.567 1.359 7.524 20.080 Atomic orbital electron populations 1.21885 0.87419 1.06282 1.06303 1.21807 0.92598 0.82795 0.74336 1.90736 1.72462 1.33686 1.52093 1.46023 1.06964 1.09456 1.74647 1.21333 0.79365 0.97440 1.00975 1.22499 0.87291 0.95146 1.04012 1.61489 1.05068 1.29268 1.29831 1.20762 0.91430 0.86972 1.00315 1.19333 0.94521 1.12037 0.93494 1.20674 0.94585 0.97846 0.96171 1.21218 0.93836 1.13515 0.97760 1.17967 0.93457 0.88941 0.91877 1.19796 0.92562 1.24441 1.16892 0.91492 1.26639 1.05661 0.92688 0.92798 1.69845 1.38134 1.14521 1.23127 0.85220 0.76337 0.79234 0.79265 1.18751 1.18793 1.18960 1.21214 0.95304 1.07568 0.96060 1.20805 0.92564 1.00077 0.98087 1.21356 1.03125 0.86819 0.91513 0.86597 1.22350 1.01344 1.02476 0.96969 1.23759 0.72326 0.92645 0.79588 1.90752 1.43324 1.67605 1.39361 1.84471 1.80639 1.29474 1.38294 0.86991 0.89304 0.86944 0.74396 0.94022 0.93726 0.87962 0.90098 0.92353 0.88896 0.87096 0.89360 0.90295 0.88574 0.86680 0.90537 0.89433 0.90015 0.71776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.30 71.24 0.73 -0.88 16 2 C 0.50 11.03 7.94 87.66 0.70 11.73 16 3 O -0.61 -21.45 17.10 -3.04 -0.05 -21.51 16 4 N -0.72 -12.98 5.56 -463.05 -2.57 -15.55 16 5 C 0.13 3.43 4.03 86.38 0.35 3.77 16 6 C 0.04 0.75 4.60 86.31 0.40 1.15 16 7 N -0.53 -14.46 4.05 -879.94 -3.57 -18.03 16 8 C 0.13 3.57 5.04 85.56 0.43 4.00 16 9 C -0.19 -7.40 5.00 -19.67 -0.10 -7.50 16 10 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 11 C -0.24 -12.26 9.80 22.73 0.22 -12.03 16 12 C 0.08 4.37 5.53 -21.29 -0.12 4.25 16 13 C -0.51 -28.18 9.05 23.46 0.21 -27.96 16 14 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 15 C 0.04 1.85 5.18 85.26 0.44 2.29 16 16 N -0.83 -43.56 11.06 21.83 0.24 -43.32 16 17 Si 0.98 39.28 29.58 68.60 2.03 41.31 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.18 -9.33 8.66 22.73 0.20 -9.13 16 22 C -0.10 -4.07 7.84 22.22 0.17 -3.89 16 23 C 0.08 2.23 2.65 44.17 0.12 2.34 16 24 H 0.12 3.70 4.80 -2.39 -0.01 3.69 16 25 C -0.17 -3.24 7.96 71.98 0.57 -2.66 16 26 C 0.47 14.59 6.06 71.24 0.43 15.03 16 27 O -0.52 -19.83 13.77 21.97 0.30 -19.53 16 28 O -0.52 -12.68 13.01 -51.43 -0.67 -13.35 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.42 3.72 8.47 -92.70 -0.79 2.94 16 33 H 0.04 1.25 5.34 -2.39 -0.01 1.24 16 34 H 0.04 1.57 7.36 -2.39 -0.02 1.55 16 35 H 0.10 1.62 7.78 -2.39 -0.02 1.60 16 36 H 0.08 1.16 5.34 -2.39 -0.01 1.15 16 37 H 0.06 1.34 7.12 -2.39 -0.02 1.32 16 38 H 0.09 2.25 7.78 -2.38 -0.02 2.23 16 39 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.29 13.55 8.30 -92.70 -0.77 12.78 16 42 H 0.10 5.20 6.38 -2.91 -0.02 5.18 16 43 H 0.12 4.08 7.53 -2.91 -0.02 4.06 16 44 H 0.08 1.25 5.90 -2.38 -0.01 1.24 16 45 H 0.09 1.38 7.26 -2.39 -0.02 1.37 16 46 H 0.08 1.48 7.95 -2.39 -0.02 1.46 16 47 H 0.42 7.32 9.10 -74.06 -0.67 6.64 16 Total: -1.00 -78.68 379.58 0.25 -78.43 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.44 Total: 34.03 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 4.97 Total: -22.49 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -5.90 Total: -76.90 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.42 Total: -54.39 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -78.68 0.25 -78.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819780250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.197 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds