Wall clock time and date at job start Tue Mar 31 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 119.99920 * 2 1 4 4 N 1.34774 * 119.99684 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99749 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46827 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.46571 * 185.32464 * 6 5 4 8 8 C 1.46906 * 110.99402 * 172.26639 * 7 6 5 9 9 C 1.50704 * 109.46909 * 193.95476 * 8 7 6 10 10 C 1.38639 * 119.74237 * 84.22449 * 9 8 7 11 11 C 1.37623 * 120.24054 * 180.23226 * 10 9 8 12 12 C 1.40708 * 119.74884 * 359.52145 * 11 10 9 13 13 C 1.41396 * 120.24818 * 180.23030 * 12 11 10 14 14 H 1.07996 * 120.00318 * 207.19526 * 13 12 11 15 15 C 1.39953 * 119.99830 * 27.19931 * 13 12 11 16 16 N 1.30823 * 119.99522 * 12.37660 * 15 13 12 17 17 Si 1.86796 * 119.99787 * 192.38310 * 15 13 12 18 18 H 1.48497 * 109.47285 * 59.99894 * 17 15 13 19 19 H 1.48503 * 109.46561 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47235 * 299.99496 * 17 15 13 21 21 C 1.40718 * 119.51151 * 0.47360 * 12 11 10 22 22 C 1.37615 * 119.74497 * 359.75573 * 21 12 11 23 23 C 1.46897 * 111.00083 * 296.21795 * 7 6 5 24 24 H 1.08995 * 109.47147 * 203.39981 * 23 7 6 25 25 C 1.52990 * 109.47484 * 323.40548 * 23 7 6 26 26 C 1.50711 * 109.46764 * 83.40635 * 23 7 6 27 27 O 1.20828 * 119.99833 * 9.04404 * 26 23 7 28 28 O 1.34225 * 119.99618 * 189.04542 * 26 23 7 29 29 H 1.09003 * 109.47369 * 240.00563 * 1 2 3 30 30 H 1.09006 * 109.47340 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47420 * 120.00020 * 1 2 3 32 32 H 0.96999 * 120.00410 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.46983 * 60.00570 * 5 4 2 34 34 H 1.08993 * 109.47402 * 300.00156 * 5 4 2 35 35 H 1.08996 * 109.47082 * 65.32581 * 6 5 4 36 36 H 1.09005 * 109.47031 * 305.32235 * 6 5 4 37 37 H 1.08996 * 109.46956 * 73.96269 * 8 7 6 38 38 H 1.09000 * 109.47372 * 313.95619 * 8 7 6 39 39 H 1.07992 * 119.88061 * 359.95236 * 10 9 8 40 40 H 1.08003 * 120.12061 * 179.71928 * 11 10 9 41 41 H 0.97005 * 119.99249 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.12812 * 179.72879 * 21 12 11 43 43 H 1.07998 * 119.88168 * 179.97438 * 22 21 12 44 44 H 1.09000 * 109.47334 * 66.44696 * 25 23 7 45 45 H 1.08998 * 109.47258 * 186.45209 * 25 23 7 46 46 H 1.08998 * 109.47269 * 306.45229 * 25 23 7 47 47 H 0.96698 * 116.99342 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1557 -2.6098 0.0001 7 7 5.6192 -2.6117 0.1280 8 6 6.1293 -3.9765 0.3159 9 6 7.5617 -3.9178 0.7807 10 6 7.8413 -3.7516 2.1284 11 6 9.1456 -3.6918 2.5634 12 6 10.1971 -3.8102 1.6360 13 6 11.5410 -3.7552 2.0720 14 1 12.3130 -3.4101 1.4002 15 6 11.8708 -4.1481 3.3741 16 7 10.9953 -4.7883 4.1056 17 14 13.5609 -3.7580 4.0675 18 1 13.7661 -2.2873 4.0736 19 1 13.6581 -4.2767 5.4556 20 1 14.6018 -4.3995 3.2248 21 6 9.9013 -3.9787 0.2706 22 6 8.5897 -4.0309 -0.1426 23 6 6.2500 -1.9691 -1.0325 24 1 7.2731 -2.3302 -1.1363 25 6 5.4583 -2.3092 -2.2967 26 6 6.2624 -0.4751 -0.8343 27 8 5.9464 -0.0047 0.2329 28 8 6.6245 0.3327 -1.8432 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0094 -0.6529 0.8894 34 1 4.0088 -0.6540 -0.8904 35 1 3.8720 -3.0955 -0.9335 36 1 3.7169 -3.1502 0.8389 37 1 6.0758 -4.5176 -0.6287 38 1 5.5254 -4.4904 1.0638 39 1 7.0327 -3.6642 2.8388 40 1 9.3611 -3.5577 3.6132 41 1 11.2241 -5.0609 5.0080 42 1 10.7007 -4.0662 -0.4504 43 1 8.3602 -4.1597 -1.1900 44 1 4.4714 -1.8498 -2.2421 45 1 5.9880 -1.9294 -3.1704 46 1 5.3514 -3.3908 -2.3785 47 1 6.6165 1.2838 -1.6685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819780251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:24 Heat of formation + Delta-G solvation = -98.294896 kcal Electronic energy + Delta-G solvation = -29242.399904 eV Core-core repulsion = 25197.109695 eV Total energy + Delta-G solvation = -4045.290210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60643 -39.52176 -38.34882 -37.11445 -35.71394 -34.84124 -33.72142 -31.42301 -31.10587 -29.77373 -29.31292 -28.09596 -26.08046 -25.05215 -23.14196 -22.42609 -21.07652 -20.80879 -20.19749 -19.32926 -17.81031 -17.31672 -17.04801 -16.89189 -16.48274 -15.77706 -15.39230 -15.29555 -15.13165 -14.58201 -14.39207 -13.99242 -13.88742 -13.53175 -13.41486 -13.08765 -12.87256 -12.80589 -12.47771 -12.36727 -12.29664 -11.97763 -11.91244 -11.61965 -11.53728 -11.40110 -11.34630 -11.07837 -11.02558 -10.88483 -10.50783 -10.37367 -10.11773 -9.98811 -9.64391 -9.36722 -9.19056 -9.14826 -8.17051 -7.45635 -7.31031 -6.72741 -4.37848 2.48991 2.55719 2.64250 2.96687 3.05501 3.07310 3.09818 3.15238 3.24794 3.93436 4.17837 4.61004 4.66219 4.80589 4.85182 4.98691 5.02992 5.08093 5.11240 5.27362 5.34801 5.52056 5.59564 5.60157 5.68157 5.70194 5.78272 5.93002 5.95252 6.11449 6.19810 6.27382 6.29272 6.41542 6.76229 6.94191 6.99814 7.09202 7.17367 7.27770 7.35801 7.37101 7.60320 7.82566 8.05255 8.10197 8.10634 8.20833 8.29264 8.64474 8.89085 8.96309 10.20751 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002622 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.237241 B =10674.996779 C =10837.926644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.543 6.543 4 N -0.732 5.732 5 C 0.115 3.885 6 C 0.038 3.962 7 N -0.509 5.509 8 C 0.124 3.876 9 C -0.212 4.212 10 C -0.074 4.074 11 C -0.162 4.162 12 C 0.113 3.887 13 C -0.462 4.462 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.798 5.798 17 Si 0.910 3.090 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.225 4.225 22 C -0.091 4.091 23 C 0.088 3.912 24 H 0.132 0.868 25 C -0.179 4.179 26 C 0.476 3.524 27 O -0.485 6.485 28 O -0.524 6.524 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.397 0.603 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.532 2.396 -9.521 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.292 3.708 3 O -0.420 6.420 4 N -0.385 5.385 5 C -0.008 4.008 6 C -0.091 4.091 7 N -0.234 5.234 8 C -0.001 4.001 9 C -0.214 4.214 10 C -0.093 4.093 11 C -0.181 4.181 12 C 0.110 3.890 13 C -0.492 4.492 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.423 5.423 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.244 4.244 22 C -0.110 4.110 23 C -0.022 4.022 24 H 0.149 0.851 25 C -0.238 4.238 26 C 0.316 3.684 27 O -0.370 6.370 28 O -0.336 6.336 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.231 0.769 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.075 3.014 -8.618 18.487 hybrid contribution 0.406 -0.191 -0.151 0.473 sum -15.669 2.823 -8.769 18.176 Atomic orbital electron populations 1.21915 0.91817 1.05443 1.04103 1.20785 0.90515 0.83544 0.75929 1.90753 1.70867 1.31369 1.49009 1.46084 1.07905 1.08635 1.75899 1.21809 0.78196 0.97127 1.03646 1.22379 0.89424 0.95972 1.01288 1.61746 1.02906 1.20807 1.37897 1.20800 0.94965 0.85504 0.98796 1.18812 0.91591 1.16987 0.93973 1.20492 0.95998 0.98962 0.93869 1.21388 0.91131 1.05259 1.00332 1.17645 0.93459 0.87079 0.90777 1.19576 0.93863 1.38709 0.97006 0.90596 1.25905 0.99160 0.92613 0.96671 1.69791 1.35587 1.27257 1.09707 0.86336 0.82014 0.79980 0.78187 1.18871 1.20338 1.19058 1.20960 0.94528 1.12643 0.96301 1.20353 0.93281 1.01243 0.96090 1.21230 1.03165 0.87642 0.90191 0.85081 1.22423 1.01006 1.02531 0.97828 1.23373 0.73193 0.90349 0.81463 1.90716 1.42674 1.76792 1.26773 1.84501 1.81570 1.23347 1.44151 0.89426 0.89072 0.89569 0.76896 0.88595 0.92405 0.93705 0.89848 0.94982 0.90773 0.89373 0.86262 0.90877 0.89074 0.89775 0.91774 0.90642 0.91194 0.73551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.32 36.00 0.37 -0.75 16 2 C 0.51 5.88 7.94 -10.99 -0.09 5.80 16 3 O -0.54 -9.23 17.09 5.56 0.09 -9.14 16 4 N -0.73 -7.38 5.56 -60.29 -0.33 -7.72 16 5 C 0.12 1.53 3.84 -4.04 -0.02 1.51 16 6 C 0.04 0.44 4.54 -3.82 -0.02 0.42 16 7 N -0.51 -7.63 4.02 -229.46 -0.92 -8.55 16 8 C 0.12 1.95 5.04 -4.97 -0.03 1.92 16 9 C -0.21 -4.30 4.97 -104.33 -0.52 -4.81 16 10 C -0.07 -1.70 9.69 -39.66 -0.38 -2.09 16 11 C -0.16 -4.18 8.67 -38.87 -0.34 -4.52 16 12 C 0.11 2.98 5.56 -106.83 -0.59 2.38 16 13 C -0.46 -12.22 9.07 -37.74 -0.34 -12.56 16 14 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 15 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 16 N -0.80 -20.62 10.82 55.55 0.60 -20.01 16 17 Si 0.91 18.82 29.58 -169.99 -5.03 13.79 16 18 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.22 -5.34 9.80 -38.87 -0.38 -5.72 16 22 C -0.09 -1.89 8.10 -39.66 -0.32 -2.21 16 23 C 0.09 1.27 2.59 -68.87 -0.18 1.09 16 24 H 0.13 2.10 5.40 -51.93 -0.28 1.82 16 25 C -0.18 -1.96 7.62 37.15 0.28 -1.67 16 26 C 0.48 7.51 5.79 36.01 0.21 7.71 16 27 O -0.48 -9.20 14.29 -18.75 -0.27 -9.46 16 28 O -0.52 -6.71 13.17 -39.25 -0.52 -7.23 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.40 2.54 8.47 -40.82 -0.35 2.20 16 33 H 0.10 1.65 6.73 -51.93 -0.35 1.30 16 34 H 0.06 0.84 4.68 -51.93 -0.24 0.60 16 35 H 0.04 0.43 6.02 -51.93 -0.31 0.12 16 36 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 37 H 0.03 0.45 7.26 -51.93 -0.38 0.07 16 38 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.23 6.16 -52.48 -0.32 2.91 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.08 1.49 7.72 -52.49 -0.41 1.09 16 44 H 0.06 0.67 5.29 -51.93 -0.27 0.40 16 45 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 46 H 0.07 0.69 7.16 -51.93 -0.37 0.31 16 47 H 0.41 3.72 9.10 45.56 0.41 4.13 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -33.25 379.20 -8.86 -42.11 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.77 Total: 12.24 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.43 Total: -11.74 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.66 Total: -36.28 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.69 Total: -25.83 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.25 -8.86 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819780251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.188 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds