Wall clock time and date at job start Tue Mar 31 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 119.99920 * 2 1 4 4 N 1.34774 * 119.99684 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99749 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46827 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.46571 * 185.32464 * 6 5 4 8 8 C 1.46906 * 110.99402 * 172.26639 * 7 6 5 9 9 C 1.50704 * 109.46909 * 193.95476 * 8 7 6 10 10 C 1.38639 * 119.74237 * 84.22449 * 9 8 7 11 11 C 1.37623 * 120.24054 * 180.23226 * 10 9 8 12 12 C 1.40708 * 119.74884 * 359.52145 * 11 10 9 13 13 C 1.41396 * 120.24818 * 180.23030 * 12 11 10 14 14 H 1.07996 * 120.00318 * 207.19526 * 13 12 11 15 15 C 1.39953 * 119.99830 * 27.19931 * 13 12 11 16 16 N 1.30823 * 119.99522 * 12.37660 * 15 13 12 17 17 Si 1.86796 * 119.99787 * 192.38310 * 15 13 12 18 18 H 1.48497 * 109.47285 * 59.99894 * 17 15 13 19 19 H 1.48503 * 109.46561 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47235 * 299.99496 * 17 15 13 21 21 C 1.40718 * 119.51151 * 0.47360 * 12 11 10 22 22 C 1.37615 * 119.74497 * 359.75573 * 21 12 11 23 23 C 1.46897 * 111.00083 * 296.21795 * 7 6 5 24 24 H 1.08995 * 109.47147 * 203.39981 * 23 7 6 25 25 C 1.52990 * 109.47484 * 323.40548 * 23 7 6 26 26 C 1.50711 * 109.46764 * 83.40635 * 23 7 6 27 27 O 1.20828 * 119.99833 * 9.04404 * 26 23 7 28 28 O 1.34225 * 119.99618 * 189.04542 * 26 23 7 29 29 H 1.09003 * 109.47369 * 240.00563 * 1 2 3 30 30 H 1.09006 * 109.47340 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47420 * 120.00020 * 1 2 3 32 32 H 0.96999 * 120.00410 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.46983 * 60.00570 * 5 4 2 34 34 H 1.08993 * 109.47402 * 300.00156 * 5 4 2 35 35 H 1.08996 * 109.47082 * 65.32581 * 6 5 4 36 36 H 1.09005 * 109.47031 * 305.32235 * 6 5 4 37 37 H 1.08996 * 109.46956 * 73.96269 * 8 7 6 38 38 H 1.09000 * 109.47372 * 313.95619 * 8 7 6 39 39 H 1.07992 * 119.88061 * 359.95236 * 10 9 8 40 40 H 1.08003 * 120.12061 * 179.71928 * 11 10 9 41 41 H 0.97005 * 119.99249 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.12812 * 179.72879 * 21 12 11 43 43 H 1.07998 * 119.88168 * 179.97438 * 22 21 12 44 44 H 1.09000 * 109.47334 * 66.44696 * 25 23 7 45 45 H 1.08998 * 109.47258 * 186.45209 * 25 23 7 46 46 H 1.08998 * 109.47269 * 306.45229 * 25 23 7 47 47 H 0.96698 * 116.99342 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1557 -2.6098 0.0001 7 7 5.6192 -2.6117 0.1280 8 6 6.1293 -3.9765 0.3159 9 6 7.5617 -3.9178 0.7807 10 6 7.8413 -3.7516 2.1284 11 6 9.1456 -3.6918 2.5634 12 6 10.1971 -3.8102 1.6360 13 6 11.5410 -3.7552 2.0720 14 1 12.3130 -3.4101 1.4002 15 6 11.8708 -4.1481 3.3741 16 7 10.9953 -4.7883 4.1056 17 14 13.5609 -3.7580 4.0675 18 1 13.7661 -2.2873 4.0736 19 1 13.6581 -4.2767 5.4556 20 1 14.6018 -4.3995 3.2248 21 6 9.9013 -3.9787 0.2706 22 6 8.5897 -4.0309 -0.1426 23 6 6.2500 -1.9691 -1.0325 24 1 7.2731 -2.3302 -1.1363 25 6 5.4583 -2.3092 -2.2967 26 6 6.2624 -0.4751 -0.8343 27 8 5.9464 -0.0047 0.2329 28 8 6.6245 0.3327 -1.8432 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0094 -0.6529 0.8894 34 1 4.0088 -0.6540 -0.8904 35 1 3.8720 -3.0955 -0.9335 36 1 3.7169 -3.1502 0.8389 37 1 6.0758 -4.5176 -0.6287 38 1 5.5254 -4.4904 1.0638 39 1 7.0327 -3.6642 2.8388 40 1 9.3611 -3.5577 3.6132 41 1 11.2241 -5.0609 5.0080 42 1 10.7007 -4.0662 -0.4504 43 1 8.3602 -4.1597 -1.1900 44 1 4.4714 -1.8498 -2.2421 45 1 5.9880 -1.9294 -3.1704 46 1 5.3514 -3.3908 -2.3785 47 1 6.6165 1.2838 -1.6685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819780251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:23 Heat of formation + Delta-G solvation = -123.090403 kcal Electronic energy + Delta-G solvation = -29243.475118 eV Core-core repulsion = 25197.109695 eV Total energy + Delta-G solvation = -4046.365423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76064 -40.51079 -39.78443 -38.57920 -36.93301 -35.99749 -35.39972 -32.84937 -32.02992 -31.13081 -30.94187 -29.24177 -27.48233 -26.23283 -24.60664 -23.50569 -22.83810 -21.82534 -21.73579 -20.54584 -19.21344 -18.97096 -18.14945 -17.79210 -17.52049 -17.15942 -16.78486 -16.39427 -16.23094 -15.95548 -15.68775 -15.52491 -15.34576 -14.78422 -14.55329 -14.32412 -14.11872 -13.78767 -13.74375 -13.45435 -13.33777 -13.26801 -13.16972 -13.00883 -12.82305 -12.75896 -12.55646 -12.51029 -12.37175 -12.19838 -12.07466 -11.93720 -11.45211 -11.29553 -11.19418 -11.03633 -10.98003 -10.13419 -9.29791 -9.27206 -9.11394 -8.58220 -6.33248 0.95482 1.17915 1.32035 1.36110 1.47245 1.49750 1.64589 1.99174 2.20557 2.23619 2.75533 3.18274 3.74767 3.83923 3.89284 3.96901 4.04006 4.10266 4.27512 4.34943 4.38665 4.46206 4.53616 4.58528 4.62377 4.68044 4.75533 4.77943 4.84390 4.93582 4.97984 5.09957 5.11120 5.17685 5.22566 5.40546 5.42516 5.49261 5.68612 5.74390 5.91251 5.98300 6.13999 6.16265 6.31807 6.42831 6.58349 6.75530 6.97276 7.07659 7.08201 7.29110 8.37288 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002622 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.237241 B =10674.996779 C =10837.926644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.496 3.504 3 O -0.607 6.607 4 N -0.716 5.716 5 C 0.126 3.874 6 C 0.045 3.955 7 N -0.535 5.535 8 C 0.131 3.869 9 C -0.192 4.192 10 C -0.085 4.085 11 C -0.190 4.190 12 C 0.077 3.923 13 C -0.503 4.503 14 H 0.072 0.928 15 C 0.031 3.969 16 N -0.832 5.832 17 Si 0.981 3.019 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.258 1.258 21 C -0.240 4.240 22 C -0.086 4.086 23 C 0.086 3.914 24 H 0.117 0.883 25 C -0.170 4.170 26 C 0.473 3.527 27 O -0.527 6.527 28 O -0.516 6.516 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.419 0.581 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 1.031 -11.646 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.286 3.714 3 O -0.489 6.489 4 N -0.370 5.370 5 C 0.001 3.999 6 C -0.082 4.082 7 N -0.260 5.260 8 C 0.005 3.995 9 C -0.194 4.194 10 C -0.104 4.104 11 C -0.210 4.210 12 C 0.074 3.926 13 C -0.534 4.534 14 H 0.090 0.910 15 C -0.183 4.183 16 N -0.459 5.459 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.104 4.104 23 C -0.024 4.024 24 H 0.134 0.866 25 C -0.228 4.228 26 C 0.315 3.685 27 O -0.415 6.415 28 O -0.329 6.329 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.257 0.743 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -18.573 1.611 -10.778 21.534 hybrid contribution 0.988 0.300 0.388 1.103 sum -17.585 1.911 -10.390 20.514 Atomic orbital electron populations 1.21916 0.87352 1.06025 1.06729 1.21810 0.92633 0.82738 0.74264 1.90730 1.72511 1.33658 1.51997 1.45929 1.06728 1.09553 1.74811 1.21437 0.79946 0.97703 1.00779 1.22390 0.87200 0.94976 1.03667 1.61469 1.05015 1.20340 1.39168 1.20741 0.91663 0.86384 1.00667 1.19338 0.94637 1.12794 0.92597 1.20732 0.95024 0.98894 0.95761 1.21318 0.92681 1.07610 0.99351 1.17978 0.93791 0.88553 0.92238 1.19812 0.94228 1.40973 0.98352 0.90962 1.26728 1.03081 0.91947 0.96523 1.69865 1.37532 1.28325 1.10159 0.85274 0.77216 0.79526 0.77812 1.18908 1.19219 1.18200 1.21207 0.96410 1.12906 0.95441 1.20743 0.91989 0.99418 0.98265 1.21280 1.02949 0.86378 0.91759 0.86550 1.22377 1.00591 1.03950 0.95891 1.23855 0.72104 0.91418 0.81084 1.90721 1.44653 1.77689 1.28430 1.84460 1.80794 1.24548 1.43118 0.86927 0.89632 0.86462 0.74297 0.93249 0.93880 0.90267 0.88344 0.91800 0.89345 0.88434 0.88777 0.90440 0.88560 0.85687 0.91333 0.89852 0.89002 0.71863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.32 71.23 0.74 -0.87 16 2 C 0.50 10.91 7.94 87.66 0.70 11.60 16 3 O -0.61 -21.10 17.09 -3.03 -0.05 -21.15 16 4 N -0.72 -12.82 5.56 -463.06 -2.57 -15.40 16 5 C 0.13 3.18 3.84 86.38 0.33 3.51 16 6 C 0.05 0.90 4.54 86.30 0.39 1.29 16 7 N -0.53 -14.63 4.02 -879.89 -3.54 -18.16 16 8 C 0.13 3.59 5.04 85.56 0.43 4.02 16 9 C -0.19 -7.46 4.97 -19.67 -0.10 -7.56 16 10 C -0.09 -3.95 9.69 22.22 0.22 -3.74 16 11 C -0.19 -10.31 8.67 22.73 0.20 -10.11 16 12 C 0.08 4.22 5.56 -21.29 -0.12 4.10 16 13 C -0.50 -28.02 9.07 23.46 0.21 -27.81 16 14 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 15 C 0.03 1.60 5.23 85.26 0.45 2.05 16 16 N -0.83 -45.08 10.82 21.83 0.24 -44.84 16 17 Si 0.98 39.85 29.58 68.60 2.03 41.88 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.24 -11.53 9.80 22.73 0.22 -11.31 16 22 C -0.09 -3.41 8.10 22.22 0.18 -3.23 16 23 C 0.09 2.29 2.59 44.17 0.11 2.40 16 24 H 0.12 3.44 5.40 -2.39 -0.01 3.43 16 25 C -0.17 -3.01 7.62 71.98 0.55 -2.46 16 26 C 0.47 14.72 5.79 71.24 0.41 15.13 16 27 O -0.53 -20.58 14.29 21.96 0.31 -20.26 16 28 O -0.52 -12.83 13.17 -51.37 -0.68 -13.50 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 1.00 8.12 -2.38 -0.02 0.98 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 3.73 8.47 -92.71 -0.79 2.95 16 33 H 0.05 1.75 6.73 -2.39 -0.02 1.73 16 34 H 0.04 1.22 4.68 -2.39 -0.01 1.21 16 35 H 0.08 1.09 6.02 -2.39 -0.01 1.07 16 36 H 0.10 1.69 7.93 -2.38 -0.02 1.67 16 37 H 0.06 1.40 7.26 -2.39 -0.02 1.38 16 38 H 0.09 2.22 7.86 -2.39 -0.02 2.21 16 39 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.09 5.47 6.16 -2.91 -0.02 5.45 16 41 H 0.29 14.07 8.30 -92.70 -0.77 13.30 16 42 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.13 3.93 7.72 -2.91 -0.02 3.91 16 44 H 0.07 1.17 5.29 -2.39 -0.01 1.16 16 45 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 46 H 0.09 1.26 7.16 -2.39 -0.02 1.24 16 47 H 0.42 7.60 9.10 -74.06 -0.67 6.93 16 Total: -1.00 -80.04 379.20 0.23 -79.82 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.44 Total: 34.61 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 4.92 Total: -22.98 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -5.87 Total: -78.40 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.41 Total: -54.92 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -80.04 0.23 -79.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819780251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.274 kcal (2) G-P(sol) polarization free energy of solvation -80.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds