Wall clock time and date at job start Tue Mar 31 2020 17:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46893 * 2 1 4 4 C 1.53004 * 109.47480 * 119.99905 * 2 1 3 5 5 O 1.42900 * 109.46889 * 55.00277 * 4 2 1 6 6 C 1.35895 * 117.00304 * 179.97438 * 5 4 2 7 7 C 1.38735 * 120.05078 * 359.72806 * 6 5 4 8 8 C 1.38145 * 119.94198 * 179.74215 * 7 6 5 9 9 C 1.38266 * 120.05504 * 0.50994 * 8 7 6 10 10 C 1.38268 * 120.11283 * 359.76205 * 9 8 7 11 11 C 1.38145 * 120.05611 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47277 * 240.00328 * 2 1 3 13 13 C 1.34778 * 119.99967 * 84.99845 * 12 2 1 14 14 O 1.21585 * 119.99945 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00134 * 180.02562 * 13 12 2 16 16 C 1.47031 * 125.64691 * 0.02562 * 15 13 12 17 17 C 1.54327 * 107.26879 * 181.01415 * 16 15 13 18 18 C 1.55156 * 102.94181 * 22.19441 * 17 16 15 19 19 O 1.42897 * 111.00579 * 82.57426 * 18 17 16 20 20 C 1.50708 * 110.99876 * 206.38340 * 18 17 16 21 21 H 1.07995 * 120.00149 * 0.02562 * 20 18 17 22 22 C 1.37875 * 119.99534 * 180.02562 * 20 18 17 23 23 N 1.31519 * 120.00164 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99936 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47735 * 89.99495 * 24 22 20 26 26 H 1.48505 * 109.47173 * 210.00035 * 24 22 20 27 27 H 1.48511 * 109.46932 * 329.99328 * 24 22 20 28 28 C 1.47422 * 125.65171 * 179.97438 * 15 13 12 29 29 H 1.09002 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47152 * 299.99292 * 1 2 3 31 31 H 1.08998 * 109.46995 * 59.99705 * 1 2 3 32 32 H 1.08999 * 109.47097 * 175.00203 * 4 2 1 33 33 H 1.08997 * 109.46906 * 295.00455 * 4 2 1 34 34 H 1.07999 * 120.03305 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.97475 * 180.23378 * 8 7 6 36 36 H 1.07998 * 119.94654 * 179.74692 * 9 8 7 37 37 H 1.07998 * 119.97593 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.03234 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00179 * 264.99590 * 12 2 1 40 40 H 1.08998 * 109.88059 * 61.59780 * 16 15 13 41 41 H 1.08994 * 109.87878 * 300.43060 * 16 15 13 42 42 H 1.09001 * 110.71763 * 140.55775 * 17 16 15 43 43 H 1.08997 * 110.72099 * 263.64813 * 17 16 15 44 44 H 0.96698 * 114.00190 * 179.97438 * 19 18 17 45 45 H 0.97003 * 119.99594 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.36378 * 37.07938 * 28 15 13 47 47 H 1.09001 * 110.46274 * 274.80114 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.4704 -2.0304 1.3094 6 6 1.8236 -2.8091 2.3657 7 6 2.7050 -2.3251 3.3215 8 6 3.0584 -3.1167 4.3972 9 6 2.5427 -4.3940 4.5160 10 6 1.6685 -4.8807 3.5616 11 6 1.3077 -4.0912 2.4870 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8574 1.1615 -2.4117 15 7 2.5959 -0.6534 -3.4577 16 6 2.9787 -2.0711 -3.5325 17 6 3.4511 -2.3424 -4.9764 18 6 3.8432 -0.9300 -5.4850 19 8 5.1628 -0.5813 -5.0618 20 6 3.7191 -0.8421 -6.9844 21 1 3.3914 -1.7015 -7.5504 22 6 4.0238 0.3355 -7.6334 23 7 4.4224 1.3822 -6.9440 24 14 3.8693 0.4448 -9.4918 25 1 2.4991 0.8921 -9.8492 26 1 4.8604 1.4194 -10.0145 27 1 4.1258 -0.8905 -10.0891 28 6 2.7833 -0.0425 -4.7862 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.1264 -0.7994 1.2056 33 1 1.7517 -0.1583 2.1369 34 1 3.1116 -1.3291 3.2269 35 1 3.7415 -2.7391 5.1436 36 1 2.8233 -5.0128 5.3554 37 1 1.2673 -5.8790 3.6564 38 1 0.6252 -4.4719 1.7416 39 1 2.2491 -1.6317 -1.1527 40 1 2.1194 -2.6998 -3.2993 41 1 3.7896 -2.2734 -2.8329 42 1 4.3147 -3.0075 -4.9810 43 1 2.6415 -2.7599 -5.5751 44 1 5.4521 0.2931 -5.3562 45 1 4.6364 2.2109 -7.4007 46 1 3.1504 0.9789 -4.6856 47 1 1.8486 -0.0553 -5.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825847743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:39 Heat of formation + Delta-G solvation = -88.716669 kcal Electronic energy + Delta-G solvation = -28866.813291 eV Core-core repulsion = 24821.938424 eV Total energy + Delta-G solvation = -4044.874867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48703 -39.63249 -38.00191 -37.27186 -35.07338 -34.22495 -32.13090 -31.47147 -31.11765 -30.02868 -29.46452 -27.73122 -27.04506 -25.04937 -23.20038 -22.70360 -22.45723 -20.84238 -19.63434 -19.55813 -18.49510 -17.61741 -17.07683 -16.58320 -16.23566 -15.94035 -15.37285 -15.22139 -14.94561 -14.80903 -14.40834 -14.17468 -13.73042 -13.72028 -13.53444 -13.18097 -13.05135 -12.84447 -12.72284 -12.33174 -12.04325 -11.87503 -11.81717 -11.60316 -11.43761 -11.22997 -11.16429 -11.02716 -10.99149 -10.76030 -10.56499 -10.48587 -10.16076 -9.61069 -9.37285 -9.29817 -8.85428 -8.66991 -8.47396 -8.35094 -7.65662 -6.27727 -4.37142 1.04644 1.16962 2.87871 3.12772 3.21956 3.28987 3.31803 3.51220 3.76341 4.26006 4.41157 4.47081 4.57054 4.67777 4.80639 4.83893 4.96846 4.99552 5.09402 5.15809 5.29629 5.39172 5.44970 5.46647 5.68034 5.68947 5.72118 5.81504 5.95855 6.01776 6.06347 6.11409 6.15679 6.24353 6.30328 6.48256 6.53546 6.73489 6.78855 6.89680 6.98799 7.15303 7.25537 7.34866 7.66587 7.76130 8.02428 8.55842 8.67248 9.15188 9.32632 9.48422 10.79494 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.002346 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.509096 B =11933.542290 C =12500.168174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 H 0.105 0.895 4 C 0.051 3.949 5 O -0.308 6.308 6 C 0.133 3.867 7 C -0.210 4.210 8 C -0.081 4.081 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.153 4.153 12 N -0.746 5.746 13 C 0.717 3.283 14 O -0.598 6.598 15 N -0.626 5.626 16 C 0.106 3.894 17 C -0.116 4.116 18 C 0.249 3.751 19 O -0.584 6.584 20 C -0.537 4.537 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.112 3.888 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.397 0.603 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.386 0.614 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -9.156 20.770 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.062 3.938 3 H 0.123 0.877 4 C -0.025 4.025 5 O -0.222 6.222 6 C 0.088 3.912 7 C -0.229 4.229 8 C -0.099 4.099 9 C -0.181 4.181 10 C -0.100 4.100 11 C -0.172 4.172 12 N -0.403 5.403 13 C 0.419 3.581 14 O -0.478 6.478 15 N -0.363 5.363 16 C -0.017 4.017 17 C -0.154 4.154 18 C 0.208 3.792 19 O -0.395 6.395 20 C -0.575 4.575 21 H 0.085 0.915 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.010 4.010 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.231 0.769 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.238 0.762 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.134 -8.659 20.860 23.162 hybrid contribution 0.192 0.382 -1.016 1.102 sum -4.942 -8.278 19.844 22.061 Atomic orbital electron populations 1.22134 0.94844 1.02667 1.02368 1.20794 0.94922 0.96466 0.81589 0.87684 1.23242 0.98416 0.81789 0.99015 1.86097 1.67041 1.26299 1.42752 1.19056 0.93920 0.91151 0.87087 1.21309 1.02651 1.01814 0.97123 1.20960 0.98234 0.93907 0.96782 1.21063 1.00207 0.96438 1.00396 1.20980 0.96513 0.99250 0.93217 1.20484 1.03891 0.92230 1.00565 1.45149 1.72676 1.13752 1.08713 1.15514 0.78478 0.84534 0.79548 1.90874 1.58253 1.14333 1.84308 1.47886 1.67154 1.11089 1.10129 1.21919 0.97906 0.82429 0.99495 1.22597 1.00570 0.99306 0.92954 1.19597 0.80213 0.87791 0.91579 1.86056 1.32608 1.41430 1.79371 1.21497 1.46531 0.98269 0.91224 0.91481 1.25089 0.93629 0.95235 0.99333 1.69574 1.44951 1.02621 1.36218 0.86387 0.78023 0.78070 0.84318 1.20407 1.20995 1.19695 1.23144 0.99764 0.99730 0.78373 0.91793 0.92104 0.91592 0.91111 0.90477 0.85443 0.85896 0.86047 0.85454 0.85164 0.76919 0.93131 0.92729 0.90805 0.90503 0.76199 0.91887 0.90126 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.29 37.16 0.35 -1.61 16 2 C 0.17 2.12 2.98 -67.93 -0.20 1.91 16 3 H 0.11 1.43 7.58 -51.93 -0.39 1.04 16 4 C 0.05 0.50 4.48 37.16 0.17 0.66 16 5 O -0.31 -3.33 8.99 -19.41 -0.17 -3.51 16 6 C 0.13 1.37 6.69 -39.21 -0.26 1.10 16 7 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 8 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 9 C -0.16 -1.25 10.04 -39.56 -0.40 -1.65 16 10 C -0.08 -0.65 10.04 -39.60 -0.40 -1.04 16 11 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 12 N -0.75 -11.43 5.02 -58.68 -0.29 -11.72 16 13 C 0.72 14.61 8.45 -86.92 -0.73 13.87 16 14 O -0.60 -14.29 16.26 5.29 0.09 -14.20 16 15 N -0.63 -13.13 3.33 -176.24 -0.59 -13.72 16 16 C 0.11 1.89 6.15 -3.06 -0.02 1.87 16 17 C -0.12 -2.32 6.12 -24.90 -0.15 -2.47 16 18 C 0.25 6.06 0.89 -89.62 -0.08 5.98 16 19 O -0.58 -15.11 13.18 -35.23 -0.46 -15.57 16 20 C -0.54 -13.94 8.25 -34.44 -0.28 -14.23 16 21 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 22 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 23 N -0.89 -23.93 10.72 55.43 0.59 -23.34 16 24 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.11 2.73 5.63 -2.53 -0.01 2.71 16 29 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.67 7.65 -51.93 -0.40 0.27 16 33 H 0.08 0.59 7.68 -51.93 -0.40 0.19 16 34 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.40 5.51 7.37 -40.82 -0.30 5.21 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 44 H 0.39 10.35 6.93 45.56 0.32 10.67 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.08 2.21 7.64 -51.93 -0.40 1.82 16 47 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -30.68 385.49 -9.80 -40.48 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -6.48 Total: 16.73 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.27 Total: 3.71 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.29 Total: -48.78 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.55 Total: -33.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.68 -9.80 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825847743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.236 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds