Wall clock time and date at job start Tue Mar 31 2020 17:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46893 * 2 1 4 4 C 1.53004 * 109.47480 * 119.99905 * 2 1 3 5 5 O 1.42900 * 109.46889 * 55.00277 * 4 2 1 6 6 C 1.35895 * 117.00304 * 179.97438 * 5 4 2 7 7 C 1.38735 * 120.05078 * 359.72806 * 6 5 4 8 8 C 1.38145 * 119.94198 * 179.74215 * 7 6 5 9 9 C 1.38266 * 120.05504 * 0.50994 * 8 7 6 10 10 C 1.38268 * 120.11283 * 359.76205 * 9 8 7 11 11 C 1.38145 * 120.05611 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.47277 * 240.00328 * 2 1 3 13 13 C 1.34778 * 119.99967 * 84.99845 * 12 2 1 14 14 O 1.21585 * 119.99945 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00134 * 180.02562 * 13 12 2 16 16 C 1.47031 * 125.64691 * 0.02562 * 15 13 12 17 17 C 1.54327 * 107.26879 * 181.01415 * 16 15 13 18 18 C 1.55156 * 102.94181 * 22.19441 * 17 16 15 19 19 O 1.42897 * 111.00579 * 82.57426 * 18 17 16 20 20 C 1.50708 * 110.99876 * 206.38340 * 18 17 16 21 21 H 1.07995 * 120.00149 * 0.02562 * 20 18 17 22 22 C 1.37875 * 119.99534 * 180.02562 * 20 18 17 23 23 N 1.31519 * 120.00164 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99936 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47735 * 89.99495 * 24 22 20 26 26 H 1.48505 * 109.47173 * 210.00035 * 24 22 20 27 27 H 1.48511 * 109.46932 * 329.99328 * 24 22 20 28 28 C 1.47422 * 125.65171 * 179.97438 * 15 13 12 29 29 H 1.09002 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47152 * 299.99292 * 1 2 3 31 31 H 1.08998 * 109.46995 * 59.99705 * 1 2 3 32 32 H 1.08999 * 109.47097 * 175.00203 * 4 2 1 33 33 H 1.08997 * 109.46906 * 295.00455 * 4 2 1 34 34 H 1.07999 * 120.03305 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.97475 * 180.23378 * 8 7 6 36 36 H 1.07998 * 119.94654 * 179.74692 * 9 8 7 37 37 H 1.07998 * 119.97593 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.03234 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00179 * 264.99590 * 12 2 1 40 40 H 1.08998 * 109.88059 * 61.59780 * 16 15 13 41 41 H 1.08994 * 109.87878 * 300.43060 * 16 15 13 42 42 H 1.09001 * 110.71763 * 140.55775 * 17 16 15 43 43 H 1.08997 * 110.72099 * 263.64813 * 17 16 15 44 44 H 0.96698 * 114.00190 * 179.97438 * 19 18 17 45 45 H 0.97003 * 119.99594 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.36378 * 37.07938 * 28 15 13 47 47 H 1.09001 * 110.46274 * 274.80114 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.4704 -2.0304 1.3094 6 6 1.8236 -2.8091 2.3657 7 6 2.7050 -2.3251 3.3215 8 6 3.0584 -3.1167 4.3972 9 6 2.5427 -4.3940 4.5160 10 6 1.6685 -4.8807 3.5616 11 6 1.3077 -4.0912 2.4870 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8574 1.1615 -2.4117 15 7 2.5959 -0.6534 -3.4577 16 6 2.9787 -2.0711 -3.5325 17 6 3.4511 -2.3424 -4.9764 18 6 3.8432 -0.9300 -5.4850 19 8 5.1628 -0.5813 -5.0618 20 6 3.7191 -0.8421 -6.9844 21 1 3.3914 -1.7015 -7.5504 22 6 4.0238 0.3355 -7.6334 23 7 4.4224 1.3822 -6.9440 24 14 3.8693 0.4448 -9.4918 25 1 2.4991 0.8921 -9.8492 26 1 4.8604 1.4194 -10.0145 27 1 4.1258 -0.8905 -10.0891 28 6 2.7833 -0.0425 -4.7862 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.1264 -0.7994 1.2056 33 1 1.7517 -0.1583 2.1369 34 1 3.1116 -1.3291 3.2269 35 1 3.7415 -2.7391 5.1436 36 1 2.8233 -5.0128 5.3554 37 1 1.2673 -5.8790 3.6564 38 1 0.6252 -4.4719 1.7416 39 1 2.2491 -1.6317 -1.1527 40 1 2.1194 -2.6998 -3.2993 41 1 3.7896 -2.2734 -2.8329 42 1 4.3147 -3.0075 -4.9810 43 1 2.6415 -2.7599 -5.5751 44 1 5.4521 0.2931 -5.3562 45 1 4.6364 2.2109 -7.4007 46 1 3.1504 0.9789 -4.6856 47 1 1.8486 -0.0553 -5.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825847743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:38 Heat of formation + Delta-G solvation = -109.253763 kcal Electronic energy + Delta-G solvation = -28867.703846 eV Core-core repulsion = 24821.938424 eV Total energy + Delta-G solvation = -4045.765422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47023 -40.92196 -39.29418 -38.43181 -36.31705 -36.06014 -34.14738 -32.68815 -31.89360 -31.21316 -30.48932 -29.51693 -27.89139 -26.93177 -24.47456 -23.64486 -23.24718 -21.87648 -21.40881 -21.02016 -19.33169 -19.21144 -18.86167 -17.62490 -17.05341 -16.95018 -16.76740 -16.65669 -16.46893 -16.18696 -15.54948 -15.36889 -15.08296 -14.84042 -14.64663 -14.50931 -14.27638 -14.22227 -13.75303 -13.53115 -13.48322 -13.37612 -13.22514 -12.83983 -12.74661 -12.50019 -12.43466 -12.31645 -12.21745 -12.13731 -12.09515 -11.92262 -11.69443 -11.32772 -11.20293 -10.64798 -10.34547 -10.22058 -9.90362 -9.33732 -9.12807 -8.25382 -6.42275 0.44182 0.54072 1.42432 1.44443 1.54343 1.65888 2.09460 2.22611 2.38443 2.89739 3.00622 3.06374 3.57670 3.80385 3.93689 3.98022 4.05087 4.11332 4.18157 4.23490 4.28569 4.33233 4.36310 4.45508 4.55063 4.60859 4.62530 4.72798 4.75655 4.81104 4.93112 5.04669 5.09299 5.13282 5.27176 5.29743 5.38926 5.41210 5.45117 5.52439 5.54285 5.65567 5.77090 5.89646 6.02557 6.17007 6.46280 6.64939 7.05575 7.30400 7.39841 7.56842 8.80322 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.002346 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.509096 B =11933.542290 C =12500.168174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.094 0.906 4 C 0.061 3.939 5 O -0.321 6.321 6 C 0.112 3.888 7 C -0.220 4.220 8 C -0.088 4.088 9 C -0.166 4.166 10 C -0.086 4.086 11 C -0.169 4.169 12 N -0.726 5.726 13 C 0.712 3.288 14 O -0.641 6.641 15 N -0.633 5.633 16 C 0.109 3.891 17 C -0.111 4.111 18 C 0.233 3.767 19 O -0.590 6.590 20 C -0.555 4.555 21 H 0.071 0.929 22 C 0.024 3.976 23 N -0.918 5.918 24 Si 0.967 3.033 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.264 1.264 28 C 0.126 3.874 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.407 0.593 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.377 0.623 45 H 0.270 0.730 46 H 0.038 0.962 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -11.300 22.419 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 H 0.112 0.888 4 C -0.015 4.015 5 O -0.235 6.235 6 C 0.067 3.933 7 C -0.239 4.239 8 C -0.106 4.106 9 C -0.184 4.184 10 C -0.103 4.103 11 C -0.188 4.188 12 N -0.383 5.383 13 C 0.414 3.586 14 O -0.524 6.524 15 N -0.369 5.369 16 C -0.013 4.013 17 C -0.148 4.148 18 C 0.192 3.808 19 O -0.399 6.399 20 C -0.593 4.593 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.558 5.558 24 Si 0.792 3.208 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.189 1.189 28 C 0.002 3.998 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.243 0.757 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.228 0.772 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.305 -10.868 22.559 25.596 hybrid contribution 0.234 1.015 -1.432 1.771 sum -5.071 -9.854 21.127 23.857 Atomic orbital electron populations 1.22052 0.94294 1.02699 1.02147 1.20995 0.95344 0.96271 0.81626 0.88849 1.23128 0.98472 0.81833 0.98047 1.86050 1.67455 1.26538 1.43437 1.19257 0.95025 0.91538 0.87442 1.21513 1.02566 1.02547 0.97239 1.21292 0.98378 0.94064 0.96890 1.21417 0.99574 0.96612 1.00828 1.21292 0.96312 1.00058 0.92683 1.20695 1.04350 0.92387 1.01336 1.45042 1.71386 1.14042 1.07806 1.15724 0.78241 0.84183 0.80472 1.90838 1.59996 1.16399 1.85129 1.47840 1.67542 1.12314 1.09227 1.22074 0.99847 0.80857 0.98560 1.22598 1.01432 0.96640 0.94173 1.19846 0.79328 0.90375 0.91244 1.86046 1.33626 1.40789 1.79461 1.21831 1.46559 0.98496 0.92402 0.91104 1.25860 0.93395 0.94977 1.03433 1.69692 1.45547 1.02944 1.37629 0.85424 0.77782 0.78201 0.79425 1.20288 1.20917 1.18856 1.22688 0.98872 0.97882 0.80323 0.91529 0.89556 0.94555 0.90631 0.87943 0.84446 0.83925 0.83883 0.83362 0.85012 0.75700 0.89564 0.91239 0.89716 0.89225 0.77238 0.92006 0.94294 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.29 71.98 0.67 -2.92 16 2 C 0.16 3.95 2.98 44.99 0.13 4.09 16 3 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16 4 C 0.06 1.06 4.48 71.98 0.32 1.39 16 5 O -0.32 -6.35 8.99 -92.37 -0.83 -7.18 16 6 C 0.11 2.11 6.69 22.51 0.15 2.26 16 7 C -0.22 -3.52 9.04 22.37 0.20 -3.32 16 8 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 9 C -0.17 -2.11 10.04 22.28 0.22 -1.88 16 10 C -0.09 -1.17 10.04 22.25 0.22 -0.94 16 11 C -0.17 -2.90 9.99 22.37 0.22 -2.68 16 12 N -0.73 -21.68 5.02 -457.81 -2.30 -23.97 16 13 C 0.71 29.30 8.45 179.05 1.51 30.82 16 14 O -0.64 -31.75 16.26 -3.98 -0.06 -31.81 16 15 N -0.63 -26.61 3.33 -829.75 -2.76 -29.37 16 16 C 0.11 3.66 6.15 86.73 0.53 4.19 16 17 C -0.11 -4.24 6.12 31.78 0.19 -4.04 16 18 C 0.23 11.41 0.89 -10.15 -0.01 11.40 16 19 O -0.59 -31.03 13.18 -148.98 -1.96 -32.99 16 20 C -0.55 -28.98 8.25 25.60 0.21 -28.77 16 21 H 0.07 3.56 7.76 -2.91 -0.02 3.53 16 22 C 0.02 1.25 5.30 84.65 0.45 1.70 16 23 N -0.92 -50.60 10.72 21.45 0.23 -50.37 16 24 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 C 0.13 6.34 5.63 86.85 0.49 6.83 16 29 H 0.07 1.52 7.56 -2.39 -0.02 1.50 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.27 7.65 -2.39 -0.02 1.25 16 33 H 0.10 1.31 7.68 -2.39 -0.02 1.29 16 34 H 0.14 1.80 6.30 -2.91 -0.02 1.78 16 35 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.41 10.55 7.37 -92.71 -0.68 9.87 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.09 3.17 8.02 -2.39 -0.02 3.15 16 44 H 0.38 20.98 6.93 -74.06 -0.51 20.47 16 45 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.04 2.25 7.64 -2.39 -0.02 2.23 16 47 H 0.04 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -68.52 385.49 -0.12 -68.64 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: -0.21 Total: 45.92 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.75 Total: 17.14 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.83 Total: -103.72 kcal Atomic # 8 Polarization: -69.12 SS G_CDS: -2.86 Total: -71.98 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -68.52 -0.12 -68.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825847743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.615 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds