Wall clock time and date at job start Tue Mar 31 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 O 1.42894 * 109.47444 * 119.99818 * 2 1 3 5 5 C 1.35893 * 117.00492 * 276.47201 * 4 2 1 6 6 C 1.38738 * 120.05371 * 5.69217 * 5 4 2 7 7 C 1.38148 * 119.94216 * 180.29715 * 6 5 4 8 8 C 1.38261 * 120.05482 * 359.42407 * 7 6 5 9 9 C 1.50700 * 119.94377 * 180.29659 * 8 7 6 10 10 N 1.46898 * 109.47359 * 270.30034 * 9 8 7 11 11 C 1.46898 * 110.99925 * 294.29811 * 10 9 8 12 12 C 1.53244 * 109.33967 * 172.74432 * 11 10 9 13 13 N 1.47075 * 108.52118 * 53.83162 * 12 11 10 14 14 C 1.36935 * 120.88206 * 128.83417 * 13 12 11 15 15 H 1.08003 * 120.00153 * 213.37589 * 14 13 12 16 16 C 1.38815 * 119.99900 * 33.37830 * 14 13 12 17 17 N 1.31616 * 119.99698 * 12.90567 * 16 14 13 18 18 Si 1.86796 * 119.99939 * 192.90719 * 16 14 13 19 19 H 1.48499 * 109.47164 * 89.99897 * 18 16 14 20 20 H 1.48502 * 109.46931 * 209.99947 * 18 16 14 21 21 H 1.48506 * 109.47156 * 329.99529 * 18 16 14 22 22 C 1.47084 * 118.23932 * 308.82107 * 13 12 11 23 23 C 1.46900 * 111.00169 * 170.00052 * 10 9 8 24 24 C 1.38269 * 120.11264 * 0.60047 * 8 7 6 25 25 C 1.38141 * 120.05319 * 359.67434 * 24 8 7 26 26 C 1.50702 * 109.46839 * 240.00381 * 2 1 3 27 27 O 1.20827 * 119.99579 * 244.99845 * 26 2 1 28 28 O 1.34223 * 120.00216 * 65.00081 * 26 2 1 29 29 H 1.09001 * 109.47163 * 59.99923 * 1 2 3 30 30 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46918 * 299.99932 * 1 2 3 32 32 H 1.07997 * 120.02535 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.96761 * 179.69798 * 7 6 5 34 34 H 1.09000 * 109.46981 * 30.29852 * 9 8 7 35 35 H 1.09001 * 109.47357 * 150.29685 * 9 8 7 36 36 H 1.08992 * 109.49467 * 292.70809 * 11 10 9 37 37 H 1.09008 * 109.49053 * 52.78851 * 11 10 9 38 38 H 1.09007 * 109.62976 * 294.12422 * 12 11 10 39 39 H 1.08995 * 109.62807 * 173.54556 * 12 11 10 40 40 H 0.97003 * 120.00090 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.62062 * 291.46927 * 22 13 12 42 42 H 1.08997 * 109.63191 * 170.89270 * 22 13 12 43 43 H 1.09002 * 109.49147 * 307.21047 * 23 10 9 44 44 H 1.08997 * 109.49478 * 67.29158 * 23 10 9 45 45 H 1.08004 * 119.96910 * 179.70404 * 24 8 7 46 46 H 1.08003 * 120.02309 * 180.02562 * 25 24 8 47 47 H 0.96702 * 117.00337 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0835 0.0547 2.3114 6 6 1.5987 1.3543 2.3421 7 6 1.6838 2.0947 3.5053 8 6 2.2406 1.5376 4.6416 9 6 2.3261 2.3453 5.9110 10 7 3.5972 3.0811 5.9386 11 6 4.7374 2.1590 6.0253 12 6 6.0415 2.9485 5.8693 13 7 6.0478 4.0397 6.8555 14 6 7.1176 4.2271 7.6895 15 1 6.9625 4.5998 8.6913 16 6 8.4013 3.9380 7.2475 17 7 8.6253 3.7306 5.9672 18 14 9.8108 3.8435 8.4696 19 1 9.9380 2.4518 8.9718 20 1 11.0740 4.2457 7.8004 21 1 9.5410 4.7579 9.6082 22 6 4.8748 4.9245 6.9218 23 6 3.6167 4.0572 7.0363 24 6 2.7249 0.2428 4.6135 25 6 2.6473 -0.4998 3.4512 26 6 2.0323 -0.7103 -1.2305 27 8 2.6506 -1.7427 -1.1220 28 8 1.7929 -0.1962 -2.4470 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1592 1.7882 1.4561 33 1 1.3109 3.1081 3.5282 34 1 1.4966 3.0514 5.9488 35 1 2.2741 1.6774 6.7708 36 1 4.7283 1.6593 6.9939 37 1 4.6651 1.4156 5.2313 38 1 6.1000 3.3639 4.8632 39 1 6.8917 2.2899 6.0465 40 1 9.5223 3.5283 5.6583 41 1 4.8212 5.5298 6.0169 42 1 4.9536 5.5723 7.7949 43 1 2.7316 4.6905 6.9756 44 1 3.6232 3.5310 7.9908 45 1 3.1638 -0.1885 5.5011 46 1 3.0254 -1.5113 3.4299 47 1 2.1345 -0.6877 -3.2065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833542022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:27 Heat of formation + Delta-G solvation = -63.307931 kcal Electronic energy + Delta-G solvation = -28611.749949 eV Core-core repulsion = 24567.976888 eV Total energy + Delta-G solvation = -4043.773061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.11763 -40.04824 -38.57678 -37.26907 -36.47890 -34.38179 -32.71881 -31.64028 -30.91046 -30.03865 -29.87632 -26.96602 -25.67990 -24.46053 -23.33221 -22.66464 -22.41081 -21.52422 -20.64862 -19.05638 -18.87277 -17.98415 -17.46650 -16.74070 -16.41213 -15.65163 -15.58358 -15.28195 -15.14152 -14.55591 -14.47643 -14.23984 -14.04174 -13.71160 -13.44032 -13.38121 -13.16638 -13.11028 -12.89031 -12.71432 -12.56458 -12.19711 -11.98290 -11.63499 -11.51829 -11.33825 -11.14942 -11.01446 -10.91952 -10.75903 -10.69186 -10.42222 -10.25652 -10.04519 -9.76352 -9.57307 -8.97133 -8.48238 -8.19806 -7.76225 -6.53785 -5.75551 -3.24281 1.30736 1.38507 1.72104 1.97337 3.25485 3.38602 3.45185 3.46573 3.68495 4.24756 4.34146 4.50031 4.60054 4.61149 4.76429 4.78242 4.97131 5.05570 5.13744 5.28449 5.37115 5.42689 5.48819 5.52876 5.56186 5.67225 5.76255 5.95060 5.97267 6.00428 6.04456 6.18294 6.20476 6.25496 6.34751 6.36637 6.59359 6.67335 6.68187 6.76001 6.97938 7.19235 7.25661 7.42750 7.62918 7.68160 7.74712 7.84889 8.50614 9.25029 9.86280 10.49150 11.32794 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002411 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.626385 B =11609.871609 C =12595.829022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.113 0.887 4 O -0.292 6.292 5 C 0.119 3.881 6 C -0.211 4.211 7 C -0.058 4.058 8 C -0.098 4.098 9 C 0.093 3.907 10 N -0.527 5.527 11 C 0.032 3.968 12 C 0.183 3.817 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.062 0.938 16 C 0.007 3.993 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.149 3.851 23 C 0.045 3.955 24 C -0.071 4.071 25 C -0.144 4.144 26 C 0.484 3.516 27 O -0.490 6.490 28 O -0.510 6.510 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.078 0.922 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.782 -6.711 -12.052 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.038 3.962 3 H 0.131 0.869 4 O -0.207 6.207 5 C 0.075 3.925 6 C -0.229 4.229 7 C -0.077 4.077 8 C -0.098 4.098 9 C -0.035 4.035 10 N -0.252 5.252 11 C -0.097 4.097 12 C 0.057 3.943 13 N -0.317 5.317 14 C -0.387 4.387 15 H 0.080 0.920 16 C -0.192 4.192 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.022 3.978 23 C -0.085 4.085 24 C -0.089 4.089 25 C -0.162 4.162 26 C 0.324 3.676 27 O -0.375 6.375 28 O -0.324 6.324 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.476 -6.745 -12.215 23.958 hybrid contribution 0.986 -0.705 0.663 1.382 sum -18.490 -7.449 -11.551 23.039 Atomic orbital electron populations 1.22354 0.91547 1.04547 1.04803 1.21511 0.96105 0.96754 0.81878 0.86913 1.86116 1.81647 1.37660 1.15231 1.18905 0.97221 0.90711 0.85694 1.21213 1.07342 0.94329 1.00051 1.20784 0.96719 0.98901 0.91262 1.19757 0.99846 0.94134 0.96100 1.21012 0.93803 0.95593 0.93064 1.62002 1.01065 1.16714 1.45431 1.22978 0.93071 0.95044 0.98582 1.20749 0.91982 0.89430 0.92126 1.44042 1.15932 1.29959 1.41811 1.19128 0.84713 1.41776 0.93048 0.92019 1.25219 0.97449 1.01116 0.95447 1.70007 1.20607 1.51426 1.12326 0.86299 0.82006 0.77889 0.80580 1.21434 1.21683 1.20404 1.20986 0.86246 0.91814 0.98724 1.22638 0.99812 0.94750 0.91272 1.20931 0.97061 0.93670 0.97273 1.20367 1.03481 1.01419 0.90951 1.22788 0.76811 0.83437 0.84595 1.90782 1.36561 1.23263 1.86892 1.84445 1.74990 1.56419 1.16529 0.89503 0.90744 0.89745 0.85457 0.85526 0.90601 0.94676 0.95871 0.91706 0.95518 0.90396 0.93604 0.95733 0.92651 0.92068 0.95479 0.85369 0.85181 0.72261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.11 37.16 0.34 -0.76 16 2 C 0.10 0.85 2.75 -27.88 -0.08 0.78 16 3 H 0.11 0.85 6.42 -51.93 -0.33 0.52 16 4 O -0.29 -3.61 9.34 -39.31 -0.37 -3.97 16 5 C 0.12 1.47 6.59 -39.22 -0.26 1.22 16 6 C -0.21 -2.31 8.18 -39.43 -0.32 -2.63 16 7 C -0.06 -0.70 9.69 -39.61 -0.38 -1.08 16 8 C -0.10 -1.30 4.89 -104.60 -0.51 -1.81 16 9 C 0.09 1.29 5.12 -4.98 -0.03 1.27 16 10 N -0.53 -9.30 4.62 -235.77 -1.09 -10.39 16 11 C 0.03 0.64 5.34 -3.70 -0.02 0.62 16 12 C 0.18 4.51 5.35 -3.60 -0.02 4.49 16 13 N -0.59 -15.27 3.00 -172.01 -0.52 -15.79 16 14 C -0.26 -7.15 9.57 -15.06 -0.14 -7.30 16 15 H 0.06 1.69 7.86 -52.48 -0.41 1.28 16 16 C 0.01 0.20 4.99 -17.43 -0.09 0.11 16 17 N -0.90 -26.58 11.42 55.49 0.63 -25.94 16 18 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.15 3.21 6.69 -3.60 -0.02 3.18 16 23 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 24 C -0.07 -0.92 7.85 -39.61 -0.31 -1.23 16 25 C -0.14 -1.84 9.99 -39.44 -0.39 -2.24 16 26 C 0.48 4.66 7.66 36.01 0.28 4.94 16 27 O -0.49 -6.67 17.26 -25.46 -0.44 -7.11 16 28 O -0.51 -3.11 13.42 -39.24 -0.53 -3.63 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.50 6.73 -51.93 -0.35 0.15 16 32 H 0.13 1.04 5.36 -52.49 -0.28 0.76 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 35 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 1.20 5.65 -51.92 -0.29 0.90 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 2.11 6.52 -51.93 -0.34 1.78 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 43 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.13 1.57 7.93 -52.48 -0.42 1.15 16 46 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 47 H 0.42 0.82 9.10 45.56 0.41 1.24 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -34.50 380.13 -9.77 -44.27 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.19 Total: -0.35 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.98 Total: 0.32 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.97 Total: -52.13 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.33 Total: -14.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.50 -9.77 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833542022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.035 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds