Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 O 1.42894 * 109.47444 * 119.99818 * 2 1 3 5 5 C 1.35893 * 117.00492 * 276.47201 * 4 2 1 6 6 C 1.38738 * 120.05371 * 5.69217 * 5 4 2 7 7 C 1.38148 * 119.94216 * 180.29715 * 6 5 4 8 8 C 1.38261 * 120.05482 * 359.42407 * 7 6 5 9 9 C 1.50700 * 119.94377 * 180.29659 * 8 7 6 10 10 N 1.46898 * 109.47359 * 270.30034 * 9 8 7 11 11 C 1.46898 * 110.99925 * 294.29811 * 10 9 8 12 12 C 1.53244 * 109.33967 * 172.74432 * 11 10 9 13 13 N 1.47075 * 108.52118 * 53.83162 * 12 11 10 14 14 C 1.36935 * 120.88206 * 128.83417 * 13 12 11 15 15 H 1.08003 * 120.00153 * 213.37589 * 14 13 12 16 16 C 1.38815 * 119.99900 * 33.37830 * 14 13 12 17 17 N 1.31616 * 119.99698 * 12.90567 * 16 14 13 18 18 Si 1.86796 * 119.99939 * 192.90719 * 16 14 13 19 19 H 1.48499 * 109.47164 * 89.99897 * 18 16 14 20 20 H 1.48502 * 109.46931 * 209.99947 * 18 16 14 21 21 H 1.48506 * 109.47156 * 329.99529 * 18 16 14 22 22 C 1.47084 * 118.23932 * 308.82107 * 13 12 11 23 23 C 1.46900 * 111.00169 * 170.00052 * 10 9 8 24 24 C 1.38269 * 120.11264 * 0.60047 * 8 7 6 25 25 C 1.38141 * 120.05319 * 359.67434 * 24 8 7 26 26 C 1.50702 * 109.46839 * 240.00381 * 2 1 3 27 27 O 1.20827 * 119.99579 * 244.99845 * 26 2 1 28 28 O 1.34223 * 120.00216 * 65.00081 * 26 2 1 29 29 H 1.09001 * 109.47163 * 59.99923 * 1 2 3 30 30 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46918 * 299.99932 * 1 2 3 32 32 H 1.07997 * 120.02535 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.96761 * 179.69798 * 7 6 5 34 34 H 1.09000 * 109.46981 * 30.29852 * 9 8 7 35 35 H 1.09001 * 109.47357 * 150.29685 * 9 8 7 36 36 H 1.08992 * 109.49467 * 292.70809 * 11 10 9 37 37 H 1.09008 * 109.49053 * 52.78851 * 11 10 9 38 38 H 1.09007 * 109.62976 * 294.12422 * 12 11 10 39 39 H 1.08995 * 109.62807 * 173.54556 * 12 11 10 40 40 H 0.97003 * 120.00090 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.62062 * 291.46927 * 22 13 12 42 42 H 1.08997 * 109.63191 * 170.89270 * 22 13 12 43 43 H 1.09002 * 109.49147 * 307.21047 * 23 10 9 44 44 H 1.08997 * 109.49478 * 67.29158 * 23 10 9 45 45 H 1.08004 * 119.96910 * 179.70404 * 24 8 7 46 46 H 1.08003 * 120.02309 * 180.02562 * 25 24 8 47 47 H 0.96702 * 117.00337 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0835 0.0547 2.3114 6 6 1.5987 1.3543 2.3421 7 6 1.6838 2.0947 3.5053 8 6 2.2406 1.5376 4.6416 9 6 2.3261 2.3453 5.9110 10 7 3.5972 3.0811 5.9386 11 6 4.7374 2.1590 6.0253 12 6 6.0415 2.9485 5.8693 13 7 6.0478 4.0397 6.8555 14 6 7.1176 4.2271 7.6895 15 1 6.9625 4.5998 8.6913 16 6 8.4013 3.9380 7.2475 17 7 8.6253 3.7306 5.9672 18 14 9.8108 3.8435 8.4696 19 1 9.9380 2.4518 8.9718 20 1 11.0740 4.2457 7.8004 21 1 9.5410 4.7579 9.6082 22 6 4.8748 4.9245 6.9218 23 6 3.6167 4.0572 7.0363 24 6 2.7249 0.2428 4.6135 25 6 2.6473 -0.4998 3.4512 26 6 2.0323 -0.7103 -1.2305 27 8 2.6506 -1.7427 -1.1220 28 8 1.7929 -0.1962 -2.4470 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1592 1.7882 1.4561 33 1 1.3109 3.1081 3.5282 34 1 1.4966 3.0514 5.9488 35 1 2.2741 1.6774 6.7708 36 1 4.7283 1.6593 6.9939 37 1 4.6651 1.4156 5.2313 38 1 6.1000 3.3639 4.8632 39 1 6.8917 2.2899 6.0465 40 1 9.5223 3.5283 5.6583 41 1 4.8212 5.5298 6.0169 42 1 4.9536 5.5723 7.7949 43 1 2.7316 4.6905 6.9756 44 1 3.6232 3.5310 7.9908 45 1 3.1638 -0.1885 5.5011 46 1 3.0254 -1.5113 3.4299 47 1 2.1345 -0.6877 -3.2065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833542022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = -86.302564 kcal Electronic energy + Delta-G solvation = -28612.747071 eV Core-core repulsion = 24567.976888 eV Total energy + Delta-G solvation = -4044.770183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.89940 -40.90566 -39.82769 -38.46842 -37.19847 -36.06967 -33.67328 -33.17376 -31.91323 -31.50119 -31.33841 -28.49795 -26.52569 -25.84251 -24.43937 -24.11394 -23.91655 -22.51186 -21.54990 -20.79478 -19.63764 -18.75763 -18.67623 -18.22961 -17.15207 -17.02185 -16.65670 -16.47698 -16.24199 -15.97536 -15.67248 -15.39923 -15.31859 -14.99924 -14.90207 -14.76120 -14.60965 -14.14698 -13.99689 -13.60867 -13.29562 -13.17822 -13.08213 -12.92950 -12.73089 -12.69503 -12.64187 -12.43754 -12.26039 -12.10760 -12.00101 -11.89303 -11.75412 -11.54171 -11.48806 -11.36892 -10.60343 -9.89966 -9.28238 -9.05021 -8.58632 -7.87660 -5.40605 0.38134 0.44984 0.99189 1.30413 1.45558 1.46518 1.55915 2.49443 2.53469 2.69636 3.25189 3.30137 3.63214 3.71626 3.75146 3.86196 3.92832 3.99262 4.05993 4.28497 4.33415 4.38723 4.46896 4.47705 4.57402 4.62884 4.66916 4.71243 4.74018 4.79936 4.86021 4.94123 5.05180 5.11788 5.13710 5.20783 5.30088 5.35592 5.38874 5.45484 5.62272 5.65487 5.73133 5.78668 6.22463 6.29827 6.35558 6.40524 6.84153 7.14180 7.82935 8.40989 9.18293 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002411 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.626385 B =11609.871609 C =12595.829022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.085 3.915 3 H 0.131 0.869 4 O -0.315 6.315 5 C 0.114 3.886 6 C -0.205 4.205 7 C -0.060 4.060 8 C -0.115 4.115 9 C 0.098 3.902 10 N -0.536 5.536 11 C 0.053 3.947 12 C 0.193 3.807 13 N -0.614 5.614 14 C -0.267 4.267 15 H 0.065 0.935 16 C -0.048 4.048 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.266 1.266 22 C 0.143 3.857 23 C 0.056 3.944 24 C -0.079 4.079 25 C -0.162 4.162 26 C 0.490 3.510 27 O -0.539 6.539 28 O -0.496 6.496 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.075 0.925 38 H -0.005 1.005 39 H 0.043 0.957 40 H 0.250 0.750 41 H 0.014 0.986 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.024 0.976 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 -5.785 -12.188 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.028 3.972 3 H 0.148 0.852 4 O -0.230 6.230 5 C 0.069 3.931 6 C -0.223 4.223 7 C -0.078 4.078 8 C -0.115 4.115 9 C -0.028 4.028 10 N -0.261 5.261 11 C -0.076 4.076 12 C 0.066 3.934 13 N -0.338 5.338 14 C -0.398 4.398 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.797 3.203 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.190 1.190 22 C 0.018 3.982 23 C -0.073 4.073 24 C -0.098 4.098 25 C -0.181 4.181 26 C 0.332 3.668 27 O -0.429 6.429 28 O -0.310 6.310 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.013 0.987 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.042 0.958 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -21.895 -5.798 -12.367 25.806 hybrid contribution 1.647 -0.956 0.565 1.986 sum -20.248 -6.753 -11.802 24.391 Atomic orbital electron populations 1.22355 0.89272 1.04611 1.06290 1.21883 0.97804 0.97034 0.80468 0.85219 1.86088 1.82000 1.38822 1.16060 1.19042 0.97040 0.91330 0.85639 1.21496 1.06403 0.93489 1.00898 1.21057 0.96083 0.99739 0.90952 1.19810 1.01018 0.94164 0.96527 1.21056 0.92166 0.96017 0.93598 1.61923 1.01936 1.16788 1.45432 1.22567 0.91775 0.94640 0.98661 1.20469 0.93537 0.89073 0.90274 1.44329 1.16734 1.31171 1.41547 1.19473 0.85664 1.41054 0.93577 0.91738 1.26010 0.99953 1.01348 0.97059 1.70175 1.20748 1.52847 1.14205 0.85247 0.78520 0.77944 0.78591 1.21170 1.22050 1.19048 1.21158 0.86531 0.92111 0.98419 1.22489 0.99035 0.94652 0.91155 1.20992 0.97375 0.94025 0.97405 1.20499 1.04277 1.01720 0.91560 1.22998 0.75566 0.82568 0.85638 1.90770 1.38986 1.25475 1.87662 1.84407 1.74368 1.56079 1.16188 0.87137 0.91444 0.89025 0.82467 0.83626 0.87976 0.94255 0.96356 0.90647 0.98736 0.93879 0.94110 0.96754 0.92109 0.88161 0.95760 0.85358 0.85298 0.70080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.11 71.98 0.66 -1.02 16 2 C 0.09 1.37 2.75 29.85 0.08 1.45 16 3 H 0.13 1.61 6.42 -2.39 -0.02 1.59 16 4 O -0.32 -7.57 9.34 -73.32 -0.69 -8.26 16 5 C 0.11 2.71 6.59 22.51 0.15 2.85 16 6 C -0.20 -3.97 8.18 22.37 0.18 -3.78 16 7 C -0.06 -1.27 9.69 22.25 0.22 -1.05 16 8 C -0.11 -2.82 4.89 -19.85 -0.10 -2.91 16 9 C 0.10 2.46 5.12 85.56 0.44 2.90 16 10 N -0.54 -17.93 4.62 -899.83 -4.16 -22.09 16 11 C 0.05 2.09 5.34 86.39 0.46 2.55 16 12 C 0.19 9.80 5.35 86.35 0.46 10.26 16 13 N -0.61 -32.03 3.00 -698.12 -2.10 -34.12 16 14 C -0.27 -15.08 9.57 84.03 0.80 -14.28 16 15 H 0.06 3.53 7.86 -2.91 -0.02 3.51 16 16 C -0.05 -2.73 4.99 84.86 0.42 -2.31 16 17 N -0.93 -57.03 11.42 21.65 0.25 -56.78 16 18 Si 0.97 45.66 29.57 68.60 2.03 47.69 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C 0.14 6.07 6.69 86.35 0.58 6.65 16 23 C 0.06 1.84 5.62 86.38 0.49 2.33 16 24 C -0.08 -2.02 7.85 22.25 0.17 -1.84 16 25 C -0.16 -4.15 9.99 22.36 0.22 -3.92 16 26 C 0.49 8.91 7.66 71.24 0.55 9.45 16 27 O -0.54 -14.82 17.26 28.38 0.49 -14.33 16 28 O -0.50 -4.96 13.42 -51.35 -0.69 -5.65 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.80 6.73 -2.39 -0.02 0.79 16 32 H 0.16 1.99 5.36 -2.91 -0.02 1.97 16 33 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.10 2.05 7.91 -2.39 -0.02 2.03 16 35 H 0.04 0.97 8.07 -2.39 -0.02 0.95 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 2.80 5.65 -2.38 -0.01 2.79 16 38 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 39 H 0.04 2.45 6.52 -2.39 -0.02 2.44 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 43 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.13 3.13 7.93 -2.91 -0.02 3.11 16 46 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 47 H 0.44 0.87 9.10 -74.06 -0.67 0.19 16 Total: -1.00 -77.17 380.13 1.23 -75.94 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.31 Total: 10.26 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.78 Total: 7.33 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -6.01 Total: -112.99 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.88 Total: -28.23 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.17 1.23 -75.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833542022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.364 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds