Wall clock time and date at job start Tue Mar 31 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 O 1.42900 * 109.46725 * 240.00861 * 2 1 3 5 5 C 1.35891 * 117.00359 * 84.23558 * 4 2 1 6 6 C 1.38737 * 120.05790 * 182.65075 * 5 4 2 7 7 C 1.38144 * 119.94561 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.05633 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94417 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47268 * 90.00056 * 9 8 7 11 11 C 1.46898 * 111.00451 * 294.30379 * 10 9 8 12 12 C 1.53232 * 109.34464 * 172.74733 * 11 10 9 13 13 N 1.47075 * 108.52265 * 53.82788 * 12 11 10 14 14 C 1.36940 * 120.87870 * 128.84174 * 13 12 11 15 15 H 1.08000 * 119.99475 * 210.58232 * 14 13 12 16 16 C 1.38811 * 120.00065 * 30.58025 * 14 13 12 17 17 N 1.31610 * 120.00120 * 10.53180 * 16 14 13 18 18 Si 1.86796 * 119.99724 * 190.52457 * 16 14 13 19 19 H 1.48506 * 109.47086 * 60.00215 * 18 16 14 20 20 H 1.48502 * 109.47314 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47474 * 300.00279 * 18 16 14 22 22 C 1.47080 * 118.23632 * 308.81322 * 13 12 11 23 23 C 1.46900 * 111.00073 * 169.99824 * 10 9 8 24 24 C 1.38263 * 120.11327 * 0.25412 * 8 7 6 25 25 C 1.38149 * 120.05420 * 359.45001 * 24 8 7 26 26 C 1.50699 * 109.47201 * 120.00476 * 2 1 3 27 27 O 1.20826 * 119.99478 * 120.00217 * 26 2 1 28 28 O 1.34229 * 120.00067 * 299.99912 * 26 2 1 29 29 H 1.08995 * 109.46987 * 299.99390 * 1 2 3 30 30 H 1.08995 * 109.47062 * 59.99162 * 1 2 3 31 31 H 1.09003 * 109.46737 * 179.97438 * 1 2 3 32 32 H 1.08011 * 120.02508 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.97061 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47350 * 330.00320 * 9 8 7 35 35 H 1.08999 * 109.47390 * 210.00262 * 9 8 7 36 36 H 1.09005 * 109.48895 * 292.70867 * 11 10 9 37 37 H 1.08999 * 109.49152 * 52.78045 * 11 10 9 38 38 H 1.09007 * 109.62564 * 294.11973 * 12 11 10 39 39 H 1.09001 * 109.62855 * 173.54290 * 12 11 10 40 40 H 0.97004 * 120.00111 * 179.97438 * 17 16 14 41 41 H 1.08989 * 109.63288 * 291.47417 * 22 13 12 42 42 H 1.09007 * 109.62460 * 170.89405 * 22 13 12 43 43 H 1.08996 * 109.49403 * 307.21390 * 23 10 9 44 44 H 1.08997 * 109.49351 * 67.29925 * 23 10 9 45 45 H 1.07998 * 119.97368 * 179.70368 * 24 8 7 46 46 H 1.07997 * 120.03334 * 180.25477 * 25 24 8 47 47 H 0.96695 * 116.99798 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0973 0.0588 -2.3080 6 6 2.4994 -0.5447 -3.4907 7 6 2.5916 0.2021 -4.6493 8 6 2.2840 1.5499 -4.6307 9 6 2.3860 2.3622 -5.8959 10 7 1.0995 2.3291 -6.6042 11 6 0.7927 0.9720 -7.0755 12 6 -0.6295 0.9419 -7.6451 13 7 -0.7469 1.9956 -8.6645 14 6 -1.2345 1.7146 -9.9129 15 1 -0.8892 2.2783 -10.7669 16 6 -2.1726 0.7052 -10.0806 17 7 -2.7472 0.1596 -9.0297 18 14 -2.6194 0.1214 -11.7978 19 1 -1.4052 -0.4012 -12.4745 20 1 -3.6374 -0.9558 -11.7052 21 1 -3.1712 1.2575 -12.5790 22 6 -0.3273 3.3593 -8.3072 23 6 1.0832 3.2942 -7.7116 24 6 1.8885 2.1550 -3.4521 25 6 1.7889 1.4113 -2.2922 26 6 2.0324 -0.7105 1.2304 27 8 2.7271 -1.6928 1.1193 28 8 1.7082 -0.2520 2.4496 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.7403 -1.5975 -3.5057 33 1 2.9043 -0.2674 -5.5703 34 1 3.1634 1.9434 -6.5350 35 1 2.6370 3.3932 -5.6466 36 1 1.5020 0.6880 -7.8529 37 1 0.8659 0.2726 -6.2427 38 1 -1.3480 1.1240 -6.8458 39 1 -0.8215 -0.0301 -8.0994 40 1 -3.4030 -0.5455 -9.1469 41 1 -1.0166 3.7737 -7.5717 42 1 -0.3194 3.9855 -9.1994 43 1 1.3669 4.2788 -7.3401 44 1 1.7883 2.9778 -8.4802 45 1 1.6534 3.2090 -3.4392 46 1 1.4760 1.8834 -1.3726 47 1 2.0542 -0.7408 3.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833542028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:30 Heat of formation + Delta-G solvation = -61.212680 kcal Electronic energy + Delta-G solvation = -28622.077344 eV Core-core repulsion = 24578.395140 eV Total energy + Delta-G solvation = -4043.682204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12716 -40.05402 -38.57155 -37.26935 -36.50786 -34.39623 -32.67815 -31.63013 -30.92440 -30.02502 -29.84463 -26.95480 -25.65822 -24.46642 -23.36956 -22.67160 -22.39347 -21.51842 -20.61727 -19.04341 -18.88060 -18.03942 -17.47661 -16.75416 -16.38230 -15.68447 -15.55248 -15.31195 -15.10471 -14.57936 -14.41441 -14.24551 -14.01453 -13.69489 -13.41891 -13.35270 -13.16011 -13.08295 -12.85549 -12.71309 -12.61178 -12.14286 -12.00120 -11.67337 -11.50946 -11.27499 -11.21530 -10.95856 -10.90003 -10.73598 -10.68119 -10.45469 -10.24698 -10.01468 -9.74323 -9.60010 -8.96969 -8.48582 -8.18469 -7.75340 -6.57007 -5.74742 -3.21680 1.31729 1.40075 1.68655 1.95653 3.25701 3.39380 3.44722 3.45556 3.69371 4.23320 4.35888 4.50198 4.58491 4.60889 4.77987 4.80549 4.98997 5.11330 5.22934 5.30300 5.37692 5.43841 5.49188 5.54980 5.65241 5.70931 5.76858 5.95355 5.97053 5.98008 6.04798 6.18264 6.21035 6.26355 6.35638 6.37756 6.58823 6.67839 6.69095 6.77009 6.97008 7.19555 7.30208 7.40110 7.63800 7.71532 7.75770 7.85398 8.49674 9.25577 9.87115 10.47717 11.33605 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002325 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.019993 B =12042.421575 C =12751.387901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.114 0.886 4 O -0.292 6.292 5 C 0.120 3.880 6 C -0.144 4.144 7 C -0.070 4.070 8 C -0.098 4.098 9 C 0.093 3.907 10 N -0.527 5.527 11 C 0.032 3.968 12 C 0.181 3.819 13 N -0.596 5.596 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.905 5.905 18 Si 0.905 3.095 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.149 3.851 23 C 0.044 3.956 24 C -0.058 4.058 25 C -0.212 4.212 26 C 0.484 3.516 27 O -0.491 6.491 28 O -0.510 6.510 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 2.760 20.292 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.037 3.963 3 H 0.131 0.869 4 O -0.206 6.206 5 C 0.076 3.924 6 C -0.162 4.162 7 C -0.089 4.089 8 C -0.099 4.099 9 C -0.035 4.035 10 N -0.252 5.252 11 C -0.097 4.097 12 C 0.055 3.945 13 N -0.319 5.319 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.734 3.266 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.022 3.978 23 C -0.085 4.085 24 C -0.076 4.076 25 C -0.230 4.230 26 C 0.324 3.676 27 O -0.377 6.377 28 O -0.323 6.323 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 10.500 2.495 20.249 22.946 hybrid contribution 0.503 -0.785 -0.805 1.232 sum 11.003 1.710 19.444 22.407 Atomic orbital electron populations 1.22326 0.91256 1.04727 1.04926 1.21542 0.96369 0.96620 0.81799 0.86903 1.86126 1.81437 1.37573 1.15496 1.18900 0.97756 0.90137 0.85630 1.20357 1.05129 1.00761 0.90000 1.20929 0.97509 0.93329 0.97114 1.19746 1.00852 0.94101 0.95152 1.21008 0.91693 0.98753 0.92024 1.62010 1.28343 1.07891 1.26970 1.22998 1.01038 0.88358 0.97324 1.20837 0.88971 0.94296 0.90403 1.44076 1.74331 1.02169 1.11327 1.19126 1.17164 1.17557 0.84421 0.91929 1.25157 0.96326 1.01011 0.97021 1.69963 1.28856 1.28274 1.27824 0.86346 0.77818 0.78227 0.84167 1.21071 1.21594 1.20890 1.20979 0.91475 0.88583 0.96732 1.22634 0.99980 0.94385 0.91485 1.20774 0.95844 0.99852 0.91149 1.21161 1.08804 0.93159 0.99907 1.22831 0.77448 0.82716 0.84610 1.90777 1.34597 1.25302 1.86997 1.84452 1.72438 1.59112 1.16330 0.89463 0.89645 0.90665 0.85179 0.85362 0.94694 0.90638 0.95932 0.91706 0.95695 0.89494 0.93550 0.95725 0.92685 0.92086 0.95489 0.85550 0.85522 0.72335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.21 37.16 0.34 -0.97 16 2 C 0.09 0.84 2.76 -27.88 -0.08 0.77 16 3 H 0.11 0.77 5.95 -51.93 -0.31 0.46 16 4 O -0.29 -3.61 9.34 -39.35 -0.37 -3.98 16 5 C 0.12 1.49 6.57 -39.21 -0.26 1.24 16 6 C -0.14 -1.85 9.99 -39.43 -0.39 -2.25 16 7 C -0.07 -0.92 7.85 -39.61 -0.31 -1.23 16 8 C -0.10 -1.31 4.89 -104.61 -0.51 -1.82 16 9 C 0.09 1.30 5.12 -4.98 -0.03 1.28 16 10 N -0.53 -9.30 4.62 -235.78 -1.09 -10.39 16 11 C 0.03 0.63 5.34 -3.71 -0.02 0.61 16 12 C 0.18 4.44 5.36 -3.61 -0.02 4.42 16 13 N -0.60 -15.26 3.03 -172.02 -0.52 -15.78 16 14 C -0.25 -7.01 9.62 -15.06 -0.14 -7.16 16 15 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 16 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 17 N -0.90 -26.50 11.05 55.49 0.61 -25.89 16 18 Si 0.90 21.83 29.57 -169.99 -5.03 16.80 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.15 3.19 6.69 -3.60 -0.02 3.16 16 23 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 24 C -0.06 -0.69 9.69 -39.61 -0.38 -1.08 16 25 C -0.21 -2.34 8.39 -39.43 -0.33 -2.67 16 26 C 0.48 4.49 7.70 36.01 0.28 4.77 16 27 O -0.49 -6.47 17.26 -25.48 -0.44 -6.91 16 28 O -0.51 -2.90 13.33 -39.25 -0.52 -3.42 16 29 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.08 0.69 7.42 -51.93 -0.39 0.30 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.13 1.58 7.93 -52.49 -0.42 1.16 16 34 H 0.03 0.48 8.07 -51.93 -0.42 0.07 16 35 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.20 5.65 -51.93 -0.29 0.90 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 2.36 6.22 -51.93 -0.32 2.04 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 1.13 7.95 -51.93 -0.41 0.71 16 43 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.13 1.05 5.70 -52.49 -0.30 0.75 16 47 H 0.42 0.63 9.10 45.56 0.41 1.04 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -34.15 380.36 -9.81 -43.95 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.20 Total: 0.03 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.99 Total: -0.15 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -1.00 Total: -52.06 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.33 Total: -14.31 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.15 -9.81 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833542028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.259 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds