Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 O 1.42900 * 109.46725 * 240.00861 * 2 1 3 5 5 C 1.35891 * 117.00359 * 84.23558 * 4 2 1 6 6 C 1.38737 * 120.05790 * 182.65075 * 5 4 2 7 7 C 1.38144 * 119.94561 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.05633 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94417 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47268 * 90.00056 * 9 8 7 11 11 C 1.46898 * 111.00451 * 294.30379 * 10 9 8 12 12 C 1.53232 * 109.34464 * 172.74733 * 11 10 9 13 13 N 1.47075 * 108.52265 * 53.82788 * 12 11 10 14 14 C 1.36940 * 120.87870 * 128.84174 * 13 12 11 15 15 H 1.08000 * 119.99475 * 210.58232 * 14 13 12 16 16 C 1.38811 * 120.00065 * 30.58025 * 14 13 12 17 17 N 1.31610 * 120.00120 * 10.53180 * 16 14 13 18 18 Si 1.86796 * 119.99724 * 190.52457 * 16 14 13 19 19 H 1.48506 * 109.47086 * 60.00215 * 18 16 14 20 20 H 1.48502 * 109.47314 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47474 * 300.00279 * 18 16 14 22 22 C 1.47080 * 118.23632 * 308.81322 * 13 12 11 23 23 C 1.46900 * 111.00073 * 169.99824 * 10 9 8 24 24 C 1.38263 * 120.11327 * 0.25412 * 8 7 6 25 25 C 1.38149 * 120.05420 * 359.45001 * 24 8 7 26 26 C 1.50699 * 109.47201 * 120.00476 * 2 1 3 27 27 O 1.20826 * 119.99478 * 120.00217 * 26 2 1 28 28 O 1.34229 * 120.00067 * 299.99912 * 26 2 1 29 29 H 1.08995 * 109.46987 * 299.99390 * 1 2 3 30 30 H 1.08995 * 109.47062 * 59.99162 * 1 2 3 31 31 H 1.09003 * 109.46737 * 179.97438 * 1 2 3 32 32 H 1.08011 * 120.02508 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.97061 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47350 * 330.00320 * 9 8 7 35 35 H 1.08999 * 109.47390 * 210.00262 * 9 8 7 36 36 H 1.09005 * 109.48895 * 292.70867 * 11 10 9 37 37 H 1.08999 * 109.49152 * 52.78045 * 11 10 9 38 38 H 1.09007 * 109.62564 * 294.11973 * 12 11 10 39 39 H 1.09001 * 109.62855 * 173.54290 * 12 11 10 40 40 H 0.97004 * 120.00111 * 179.97438 * 17 16 14 41 41 H 1.08989 * 109.63288 * 291.47417 * 22 13 12 42 42 H 1.09007 * 109.62460 * 170.89405 * 22 13 12 43 43 H 1.08996 * 109.49403 * 307.21390 * 23 10 9 44 44 H 1.08997 * 109.49351 * 67.29925 * 23 10 9 45 45 H 1.07998 * 119.97368 * 179.70368 * 24 8 7 46 46 H 1.07997 * 120.03334 * 180.25477 * 25 24 8 47 47 H 0.96695 * 116.99798 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0973 0.0588 -2.3080 6 6 2.4994 -0.5447 -3.4907 7 6 2.5916 0.2021 -4.6493 8 6 2.2840 1.5499 -4.6307 9 6 2.3860 2.3622 -5.8959 10 7 1.0995 2.3291 -6.6042 11 6 0.7927 0.9720 -7.0755 12 6 -0.6295 0.9419 -7.6451 13 7 -0.7469 1.9956 -8.6645 14 6 -1.2345 1.7146 -9.9129 15 1 -0.8892 2.2783 -10.7669 16 6 -2.1726 0.7052 -10.0806 17 7 -2.7472 0.1596 -9.0297 18 14 -2.6194 0.1214 -11.7978 19 1 -1.4052 -0.4012 -12.4745 20 1 -3.6374 -0.9558 -11.7052 21 1 -3.1712 1.2575 -12.5790 22 6 -0.3273 3.3593 -8.3072 23 6 1.0832 3.2942 -7.7116 24 6 1.8885 2.1550 -3.4521 25 6 1.7889 1.4113 -2.2922 26 6 2.0324 -0.7105 1.2304 27 8 2.7271 -1.6928 1.1193 28 8 1.7082 -0.2520 2.4496 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.7403 -1.5975 -3.5057 33 1 2.9043 -0.2674 -5.5703 34 1 3.1634 1.9434 -6.5350 35 1 2.6370 3.3932 -5.6466 36 1 1.5020 0.6880 -7.8529 37 1 0.8659 0.2726 -6.2427 38 1 -1.3480 1.1240 -6.8458 39 1 -0.8215 -0.0301 -8.0994 40 1 -3.4030 -0.5455 -9.1469 41 1 -1.0166 3.7737 -7.5717 42 1 -0.3194 3.9855 -9.1994 43 1 1.3669 4.2788 -7.3401 44 1 1.7883 2.9778 -8.4802 45 1 1.6534 3.2090 -3.4392 46 1 1.4760 1.8834 -1.3726 47 1 2.0542 -0.7408 3.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833542028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = -83.778668 kcal Electronic energy + Delta-G solvation = -28623.055879 eV Core-core repulsion = 24578.395140 eV Total energy + Delta-G solvation = -4044.660739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89900 -40.90174 -39.82263 -38.47054 -37.19355 -36.07858 -33.67065 -33.15161 -31.91874 -31.48752 -31.32678 -28.49305 -26.52838 -25.84838 -24.44886 -24.10501 -23.93048 -22.50886 -21.51839 -20.77721 -19.64213 -18.78547 -18.68581 -18.22671 -17.12042 -17.01377 -16.65999 -16.48729 -16.23756 -15.99107 -15.65776 -15.34402 -15.30656 -14.98326 -14.89778 -14.72691 -14.60800 -14.14562 -14.00264 -13.62915 -13.35356 -13.23087 -12.97554 -12.89829 -12.75446 -12.68824 -12.60387 -12.45728 -12.26517 -12.17017 -11.97059 -11.87109 -11.73483 -11.53651 -11.45113 -11.38178 -10.58456 -9.90499 -9.27816 -9.04660 -8.59988 -7.85736 -5.36531 0.38538 0.45427 0.98639 1.30043 1.46490 1.48710 1.55573 2.50663 2.52538 2.70594 3.25674 3.32521 3.59881 3.72596 3.73042 3.84792 3.92826 4.01523 4.05655 4.28184 4.34026 4.39575 4.46984 4.47286 4.57835 4.63414 4.65684 4.71832 4.74144 4.80723 4.85984 4.94408 5.06716 5.12447 5.13586 5.22522 5.29956 5.38354 5.40249 5.45759 5.61600 5.71178 5.73103 5.78369 6.23103 6.29940 6.35398 6.41313 6.84946 7.15507 7.85094 8.40870 9.20276 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002325 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.019993 B =12042.421575 C =12751.387901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 H 0.139 0.861 4 O -0.315 6.315 5 C 0.115 3.885 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.115 4.115 9 C 0.098 3.902 10 N -0.535 5.535 11 C 0.052 3.948 12 C 0.190 3.810 13 N -0.615 5.615 14 C -0.265 4.265 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.143 3.857 23 C 0.055 3.945 24 C -0.059 4.059 25 C -0.206 4.206 26 C 0.493 3.507 27 O -0.539 6.539 28 O -0.495 6.495 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.016 0.984 37 H 0.076 0.924 38 H -0.006 1.006 39 H 0.052 0.948 40 H 0.250 0.750 41 H 0.016 0.984 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.023 0.977 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 4.672 21.414 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.029 3.971 3 H 0.156 0.844 4 O -0.229 6.229 5 C 0.071 3.929 6 C -0.181 4.181 7 C -0.098 4.098 8 C -0.116 4.116 9 C -0.029 4.029 10 N -0.260 5.260 11 C -0.077 4.077 12 C 0.064 3.936 13 N -0.340 5.340 14 C -0.395 4.395 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.200 1.200 22 C 0.018 3.982 23 C -0.074 4.074 24 C -0.078 4.078 25 C -0.224 4.224 26 C 0.335 3.665 27 O -0.428 6.428 28 O -0.309 6.309 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.094 0.906 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.041 0.959 45 H 0.164 0.836 46 H 0.175 0.825 47 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 11.422 4.450 21.408 24.669 hybrid contribution 0.209 -1.323 -0.996 1.670 sum 11.631 3.126 20.412 23.701 Atomic orbital electron populations 1.22320 0.90123 1.04349 1.05945 1.21874 0.97188 0.97497 0.80578 0.84379 1.86099 1.81678 1.38786 1.16341 1.19038 0.97491 0.90826 0.85589 1.20491 1.05922 1.01029 0.90610 1.20988 0.97899 0.93638 0.97242 1.19799 1.02122 0.94106 0.95535 1.21050 0.89550 1.00525 0.91730 1.61932 1.31134 1.06195 1.26729 1.22586 0.97418 0.90445 0.97240 1.20549 0.91284 0.92581 0.89191 1.44363 1.74570 1.04097 1.10927 1.19484 1.16896 1.17504 0.85613 0.91574 1.25947 0.96609 1.01448 1.00667 1.70147 1.29535 1.28769 1.29847 0.85297 0.77414 0.77613 0.79815 1.20368 1.22004 1.19953 1.21154 0.93529 0.86458 0.97069 1.22493 0.97018 0.96348 0.91533 1.21045 0.95020 1.00865 0.90831 1.21447 1.07623 0.92442 1.00926 1.22909 0.76293 0.81754 0.85565 1.90768 1.36926 1.27400 1.87736 1.84411 1.71778 1.58811 1.15942 0.86952 0.90008 0.91808 0.85236 0.85385 0.94368 0.88048 0.96579 0.90614 0.98803 0.92939 0.94106 0.96606 0.92096 0.88197 0.95879 0.83626 0.82519 0.70053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.21 71.98 0.66 -1.55 16 2 C 0.09 1.37 2.76 29.85 0.08 1.45 16 3 H 0.14 1.45 5.95 -2.39 -0.01 1.44 16 4 O -0.31 -7.57 9.34 -73.24 -0.68 -8.25 16 5 C 0.12 2.75 6.57 22.51 0.15 2.89 16 6 C -0.16 -4.16 9.99 22.37 0.22 -3.94 16 7 C -0.08 -2.03 7.85 22.25 0.17 -1.86 16 8 C -0.11 -2.86 4.89 -19.85 -0.10 -2.95 16 9 C 0.10 2.49 5.12 85.56 0.44 2.93 16 10 N -0.54 -17.93 4.62 -899.86 -4.16 -22.09 16 11 C 0.05 2.08 5.34 86.38 0.46 2.54 16 12 C 0.19 9.65 5.36 86.35 0.46 10.11 16 13 N -0.62 -32.00 3.03 -698.14 -2.11 -34.11 16 14 C -0.26 -14.87 9.62 84.03 0.81 -14.06 16 15 H 0.07 3.59 7.85 -2.91 -0.02 3.56 16 16 C -0.05 -2.93 5.06 84.86 0.43 -2.50 16 17 N -0.94 -56.70 11.05 21.65 0.24 -56.46 16 18 Si 0.97 45.48 29.57 68.60 2.03 47.51 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.14 6.04 6.69 86.35 0.58 6.62 16 23 C 0.06 1.83 5.62 86.38 0.49 2.31 16 24 C -0.06 -1.26 9.69 22.25 0.22 -1.05 16 25 C -0.21 -4.04 8.39 22.37 0.19 -3.85 16 26 C 0.49 8.43 7.70 71.24 0.55 8.98 16 27 O -0.54 -14.09 17.26 28.40 0.49 -13.60 16 28 O -0.49 -4.37 13.33 -51.41 -0.69 -5.05 16 29 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 30 H 0.08 1.15 7.42 -2.39 -0.02 1.13 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.13 3.16 7.93 -2.91 -0.02 3.14 16 34 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.10 2.07 7.91 -2.39 -0.02 2.05 16 36 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 2.81 5.65 -2.39 -0.01 2.80 16 38 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 39 H 0.05 2.99 6.22 -2.39 -0.01 2.98 16 40 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 2.44 7.95 -2.38 -0.02 2.42 16 43 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 46 H 0.16 2.00 5.70 -2.91 -0.02 1.98 16 47 H 0.44 0.28 9.10 -74.06 -0.67 -0.40 16 Total: -1.00 -76.18 380.36 1.24 -74.93 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.31 Total: 11.05 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.81 Total: 6.07 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -6.03 Total: -112.66 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.88 Total: -26.90 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.18 1.24 -74.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833542028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.844 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds