Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47355 * 2 1 4 4 O 1.45198 * 109.46957 * 240.00372 * 2 1 3 5 5 C 1.34234 * 117.00201 * 89.99852 * 4 2 1 6 6 O 1.20821 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00145 * 180.02562 * 5 4 2 8 8 C 1.47198 * 115.55428 * 65.39474 * 7 5 4 9 9 N 5.21357 * 85.19577 * 243.92639 * 2 1 3 10 10 C 1.53086 * 117.50831 * 211.11408 * 7 5 4 11 11 C 1.52555 * 117.50922 * 279.67310 * 7 5 4 12 12 C 1.53869 * 120.82202 * 142.33403 * 11 7 5 13 13 C 1.54992 * 104.06349 * 192.35232 * 12 11 7 14 14 C 1.54929 * 102.81800 * 37.56843 * 13 12 11 15 15 C 1.53482 * 121.09184 * 2.96494 * 11 7 5 16 16 C 1.50698 * 109.47566 * 120.00061 * 2 1 3 17 17 O 1.21286 * 119.99846 * 114.99352 * 16 2 1 18 18 N 1.34768 * 120.00075 * 294.72837 * 16 2 1 19 19 C 1.46502 * 119.99985 * 0.26593 * 18 16 2 20 20 C 1.46503 * 120.00096 * 180.27219 * 18 16 2 21 21 C 1.50701 * 109.47082 * 89.99941 * 20 18 16 22 22 H 1.08001 * 120.00120 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99897 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99907 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47175 * 89.99461 * 25 23 21 27 27 H 1.48500 * 109.46850 * 209.99667 * 25 23 21 28 28 H 1.48503 * 109.46761 * 329.99309 * 25 23 21 29 29 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46488 * 299.99870 * 1 2 3 31 31 H 1.09001 * 109.46954 * 59.99627 * 1 2 3 32 32 H 1.08999 * 117.50928 * 214.91448 * 10 7 5 33 33 H 1.09005 * 117.51167 * 359.96864 * 10 7 5 34 34 H 1.08993 * 110.51670 * 310.99983 * 12 11 7 35 35 H 1.09001 * 110.51002 * 73.71222 * 12 11 7 36 36 H 1.09001 * 110.74327 * 279.24486 * 13 12 11 37 37 H 1.09000 * 110.90076 * 155.97549 * 13 12 11 38 38 H 1.08996 * 110.48210 * 203.59558 * 14 13 12 39 39 H 1.09005 * 110.58734 * 81.02445 * 14 13 12 40 40 H 1.08999 * 110.06867 * 263.31619 * 15 11 7 41 41 H 1.09004 * 110.07090 * 24.79401 * 15 11 7 42 42 H 1.09005 * 109.46677 * 90.00420 * 19 18 16 43 43 H 1.08999 * 109.47605 * 209.99937 * 19 18 16 44 44 H 1.09001 * 109.47534 * 330.00490 * 19 18 16 45 45 H 1.09001 * 109.47185 * 209.99655 * 20 18 16 46 46 H 1.08998 * 109.46935 * 329.99950 * 20 18 16 47 47 H 0.97005 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9981 1.2520 -2.2503 7 6 2.7181 -0.5770 -3.5496 8 6 1.8003 -1.5398 -4.1799 9 7 1.0933 -2.2834 -4.6665 10 6 3.5947 0.2729 -4.4730 11 6 4.2141 -0.8573 -3.6542 12 6 4.7309 -2.1344 -4.3394 13 6 6.2308 -2.1887 -3.9524 14 6 6.2274 -1.6755 -2.4906 15 6 5.1599 -0.5603 -2.4825 16 6 2.0324 -0.7104 1.2304 17 8 2.6530 -1.7467 1.1213 18 7 1.7968 -0.1914 2.4516 19 6 1.0472 1.0604 2.5833 20 6 2.2904 -0.8789 3.6474 21 6 3.6731 -0.3796 3.9792 22 1 4.1378 0.3741 3.3609 23 6 4.3452 -0.8858 5.0715 24 7 3.7794 -1.8040 5.8241 25 14 6.0593 -0.2674 5.4823 26 1 5.9591 0.8984 6.3965 27 1 6.8308 -1.3503 6.1437 28 1 6.7507 0.1410 4.2331 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 3.4922 0.1185 -5.5472 33 1 3.8085 1.2959 -4.1632 34 1 4.2064 -3.0109 -3.9591 35 1 4.6180 -2.0600 -5.4210 36 1 6.8185 -1.5297 -4.5915 37 1 6.6084 -3.2100 -4.0022 38 1 7.2042 -1.2704 -2.2264 39 1 5.9489 -2.4752 -1.8043 40 1 5.6333 0.4117 -2.6211 41 1 4.6079 -0.5766 -1.5428 42 1 -0.0165 0.8392 2.6726 43 1 1.3833 1.5934 3.4727 44 1 1.2167 1.6799 1.7027 45 1 1.6212 -0.6782 4.4841 46 1 2.3268 -1.9521 3.4605 47 1 4.2524 -2.1604 6.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837906977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = -63.707571 kcal Electronic energy + Delta-G solvation = -29626.655299 eV Core-core repulsion = 25582.864908 eV Total energy + Delta-G solvation = -4043.790391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37326 -39.77064 -38.75593 -36.66770 -36.55773 -34.97325 -34.52339 -32.92995 -31.64194 -29.05811 -27.78127 -26.99748 -26.20317 -25.43037 -24.30736 -22.84896 -21.77157 -20.66732 -19.81465 -19.04478 -18.81695 -17.23325 -16.71093 -16.56839 -16.19644 -15.81027 -15.58724 -15.38525 -14.65357 -14.51590 -14.30036 -13.99607 -13.74630 -13.64226 -13.57594 -13.25759 -13.05237 -12.87854 -12.68456 -12.64472 -12.43214 -12.23251 -12.14758 -11.76836 -11.55222 -11.50982 -11.30657 -11.25839 -11.24091 -10.96920 -10.90011 -10.86149 -10.77562 -10.70606 -10.61261 -10.20791 -10.14553 -9.69284 -8.97373 -8.48400 -7.77972 -6.09325 -4.14518 1.65361 1.97306 2.14068 2.57537 3.19242 3.27253 3.28086 3.34230 3.35674 3.38562 3.70318 4.01319 4.15348 4.23733 4.40245 4.42508 4.57096 4.76914 4.90115 4.91649 4.99059 5.10403 5.20670 5.23957 5.25428 5.34000 5.42482 5.44944 5.51104 5.57757 5.57975 5.58681 5.72393 5.80139 5.85123 5.93329 5.96220 6.03710 6.16779 6.20576 6.20704 6.92844 7.13685 7.34600 7.39889 7.48512 7.86288 8.15957 8.23365 8.79391 8.94304 9.50663 10.98843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.003643 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.683499 B = 7683.471390 C = 9176.052422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 H 0.109 0.891 4 O -0.313 6.313 5 C 0.511 3.489 6 O -0.488 6.488 7 C -0.052 4.052 8 C 0.249 3.751 9 N -0.401 5.401 10 C -0.102 4.102 11 C -0.069 4.069 12 C -0.095 4.095 13 C -0.119 4.119 14 C -0.122 4.122 15 C -0.100 4.100 16 C 0.509 3.491 17 O -0.516 6.516 18 N -0.595 5.595 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 6.127 -19.262 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.127 0.873 4 O -0.228 6.228 5 C 0.351 3.649 6 O -0.375 6.375 7 C -0.056 4.056 8 C -0.069 4.069 9 N -0.076 5.076 10 C -0.139 4.139 11 C -0.070 4.070 12 C -0.132 4.132 13 C -0.157 4.157 14 C -0.160 4.160 15 C -0.137 4.137 16 C 0.293 3.707 17 O -0.392 6.392 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.085 4.661 -19.801 20.371 hybrid contribution 0.835 0.810 0.699 1.358 sum -0.250 5.472 -19.101 19.871 Atomic orbital electron populations 1.22302 0.92214 1.04233 1.04191 1.22768 0.95922 0.97702 0.82624 0.87348 1.86641 1.75808 1.41078 1.19246 1.21634 0.74139 0.85115 0.84032 1.90678 1.46926 1.15846 1.84010 1.17765 0.91913 1.01242 0.94719 1.26771 0.93343 0.93027 0.93761 1.81247 1.08366 1.09319 1.08631 1.23527 0.95130 0.97608 0.97684 1.22280 0.86845 0.98289 0.99627 1.22039 0.96701 0.94827 0.99619 1.22467 0.94910 1.01625 0.96653 1.22350 0.98567 0.98218 0.96826 1.21844 0.95767 0.99940 0.96140 1.19689 0.81318 0.85984 0.83749 1.90719 1.39538 1.23250 1.85668 1.48068 1.53944 1.23918 1.06886 1.21859 0.95418 0.86730 1.02863 1.19362 0.94277 0.93855 0.79670 1.21410 1.00871 1.23177 1.11348 0.92385 1.24930 0.98225 0.94837 0.96003 1.69931 1.38127 1.28047 1.17125 0.86490 0.84039 0.78389 0.78484 1.20598 1.21035 1.19840 0.90860 0.88999 0.91263 0.86116 0.85425 0.90257 0.90785 0.91053 0.90946 0.90926 0.90554 0.90175 0.90070 0.93092 0.90191 0.92336 0.94598 0.93623 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.27 37.16 0.34 -1.89 16 2 C 0.07 1.09 2.16 -27.88 -0.06 1.03 16 3 H 0.11 1.61 6.14 -51.93 -0.32 1.29 16 4 O -0.31 -5.18 9.19 -45.90 -0.42 -5.60 16 5 C 0.51 7.17 5.96 36.01 0.21 7.39 16 6 O -0.49 -7.13 15.92 -18.75 -0.30 -7.42 16 7 C -0.05 -0.58 2.47 -158.63 -0.39 -0.98 16 8 C 0.25 3.16 14.33 -20.78 -0.30 2.86 16 9 N -0.40 -5.73 18.53 42.14 0.78 -4.95 16 10 C -0.10 -0.78 9.45 -26.85 -0.25 -1.03 16 11 C -0.07 -0.65 2.43 -154.20 -0.38 -1.03 16 12 C -0.09 -0.80 5.80 -25.23 -0.15 -0.94 16 13 C -0.12 -0.92 6.91 -24.66 -0.17 -1.09 16 14 C -0.12 -1.19 6.84 -24.99 -0.17 -1.36 16 15 C -0.10 -1.05 6.19 -25.76 -0.16 -1.21 16 16 C 0.51 10.54 7.10 -10.99 -0.08 10.46 16 17 O -0.52 -13.00 16.09 -14.06 -0.23 -13.23 16 18 N -0.59 -12.19 2.86 -182.95 -0.52 -12.72 16 19 C 0.08 1.12 8.92 59.85 0.53 1.65 16 20 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 21 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 25 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.03 5.14 -51.93 -0.27 0.76 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 0.89 8.00 -51.93 -0.42 0.47 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.11 7.06 -51.93 -0.37 0.74 16 42 H 0.05 0.63 7.04 -51.93 -0.37 0.27 16 43 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.72 6.06 -51.93 -0.31 0.41 16 45 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 46 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -34.06 395.02 -7.52 -41.57 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.04 Total: -1.46 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.46 Total: 6.82 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.99 Total: -42.97 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.95 Total: -26.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.06 -7.52 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.133 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds