Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47355 * 2 1 4 4 O 1.45198 * 109.46957 * 240.00372 * 2 1 3 5 5 C 1.34234 * 117.00201 * 89.99852 * 4 2 1 6 6 O 1.20821 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00145 * 180.02562 * 5 4 2 8 8 C 1.47198 * 115.55428 * 65.39474 * 7 5 4 9 9 N 5.21357 * 85.19577 * 243.92639 * 2 1 3 10 10 C 1.53086 * 117.50831 * 211.11408 * 7 5 4 11 11 C 1.52555 * 117.50922 * 279.67310 * 7 5 4 12 12 C 1.53869 * 120.82202 * 142.33403 * 11 7 5 13 13 C 1.54992 * 104.06349 * 192.35232 * 12 11 7 14 14 C 1.54929 * 102.81800 * 37.56843 * 13 12 11 15 15 C 1.53482 * 121.09184 * 2.96494 * 11 7 5 16 16 C 1.50698 * 109.47566 * 120.00061 * 2 1 3 17 17 O 1.21286 * 119.99846 * 114.99352 * 16 2 1 18 18 N 1.34768 * 120.00075 * 294.72837 * 16 2 1 19 19 C 1.46502 * 119.99985 * 0.26593 * 18 16 2 20 20 C 1.46503 * 120.00096 * 180.27219 * 18 16 2 21 21 C 1.50701 * 109.47082 * 89.99941 * 20 18 16 22 22 H 1.08001 * 120.00120 * 359.97438 * 21 20 18 23 23 C 1.37881 * 119.99897 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99907 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47175 * 89.99461 * 25 23 21 27 27 H 1.48500 * 109.46850 * 209.99667 * 25 23 21 28 28 H 1.48503 * 109.46761 * 329.99309 * 25 23 21 29 29 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46488 * 299.99870 * 1 2 3 31 31 H 1.09001 * 109.46954 * 59.99627 * 1 2 3 32 32 H 1.08999 * 117.50928 * 214.91448 * 10 7 5 33 33 H 1.09005 * 117.51167 * 359.96864 * 10 7 5 34 34 H 1.08993 * 110.51670 * 310.99983 * 12 11 7 35 35 H 1.09001 * 110.51002 * 73.71222 * 12 11 7 36 36 H 1.09001 * 110.74327 * 279.24486 * 13 12 11 37 37 H 1.09000 * 110.90076 * 155.97549 * 13 12 11 38 38 H 1.08996 * 110.48210 * 203.59558 * 14 13 12 39 39 H 1.09005 * 110.58734 * 81.02445 * 14 13 12 40 40 H 1.08999 * 110.06867 * 263.31619 * 15 11 7 41 41 H 1.09004 * 110.07090 * 24.79401 * 15 11 7 42 42 H 1.09005 * 109.46677 * 90.00420 * 19 18 16 43 43 H 1.08999 * 109.47605 * 209.99937 * 19 18 16 44 44 H 1.09001 * 109.47534 * 330.00490 * 19 18 16 45 45 H 1.09001 * 109.47185 * 209.99655 * 20 18 16 46 46 H 1.08998 * 109.46935 * 329.99950 * 20 18 16 47 47 H 0.97005 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9981 1.2520 -2.2503 7 6 2.7181 -0.5770 -3.5496 8 6 1.8003 -1.5398 -4.1799 9 7 1.0933 -2.2834 -4.6665 10 6 3.5947 0.2729 -4.4730 11 6 4.2141 -0.8573 -3.6542 12 6 4.7309 -2.1344 -4.3394 13 6 6.2308 -2.1887 -3.9524 14 6 6.2274 -1.6755 -2.4906 15 6 5.1599 -0.5603 -2.4825 16 6 2.0324 -0.7104 1.2304 17 8 2.6530 -1.7467 1.1213 18 7 1.7968 -0.1914 2.4516 19 6 1.0472 1.0604 2.5833 20 6 2.2904 -0.8789 3.6474 21 6 3.6731 -0.3796 3.9792 22 1 4.1378 0.3741 3.3609 23 6 4.3452 -0.8858 5.0715 24 7 3.7794 -1.8040 5.8241 25 14 6.0593 -0.2674 5.4823 26 1 5.9591 0.8984 6.3965 27 1 6.8308 -1.3503 6.1437 28 1 6.7507 0.1410 4.2331 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 3.4922 0.1185 -5.5472 33 1 3.8085 1.2959 -4.1632 34 1 4.2064 -3.0109 -3.9591 35 1 4.6180 -2.0600 -5.4210 36 1 6.8185 -1.5297 -4.5915 37 1 6.6084 -3.2100 -4.0022 38 1 7.2042 -1.2704 -2.2264 39 1 5.9489 -2.4752 -1.8043 40 1 5.6333 0.4117 -2.6211 41 1 4.6079 -0.5766 -1.5428 42 1 -0.0165 0.8392 2.6726 43 1 1.3833 1.5934 3.4727 44 1 1.2167 1.6799 1.7027 45 1 1.6212 -0.6782 4.4841 46 1 2.3268 -1.9521 3.4605 47 1 4.2524 -2.1604 6.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837906977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = -82.751559 kcal Electronic energy + Delta-G solvation = -29627.481108 eV Core-core repulsion = 25582.864908 eV Total energy + Delta-G solvation = -4044.616200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43275 -41.01362 -40.02149 -37.81283 -37.60450 -36.72033 -35.33266 -34.90371 -33.07217 -29.81145 -29.62826 -27.93951 -27.60053 -26.30922 -25.78650 -24.32998 -22.97151 -21.48533 -20.57798 -20.48483 -19.99945 -18.70608 -18.41890 -17.87147 -17.58641 -17.04718 -16.77903 -16.44791 -16.40721 -15.84830 -15.38348 -15.03256 -14.89278 -14.79317 -14.54775 -14.47697 -14.24281 -14.02881 -13.87826 -13.71640 -13.55788 -13.51318 -13.38909 -13.33549 -13.07073 -12.83145 -12.66494 -12.53117 -12.31500 -12.21939 -12.09478 -12.02627 -11.97144 -11.82169 -11.72169 -11.57889 -11.45937 -10.95942 -10.65445 -10.64482 -9.53329 -8.23590 -6.38276 0.61174 0.88412 1.22457 1.37347 1.40256 1.49876 1.55435 1.59599 2.23587 2.39049 2.42272 2.52854 3.06776 3.11778 3.30421 3.36693 3.42591 3.62963 3.70326 3.75701 3.76915 4.21398 4.31394 4.40077 4.46562 4.48043 4.53482 4.59874 4.66013 4.70550 4.71773 4.83404 4.87292 4.91011 4.93041 5.02308 5.04885 5.09193 5.15083 5.20319 5.22456 5.27578 5.46703 5.50354 5.76956 6.02921 6.15545 6.32956 6.58284 6.70351 7.18981 7.35312 8.83877 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.003643 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.683499 B = 7683.471390 C = 9176.052422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.126 0.874 4 O -0.338 6.338 5 C 0.511 3.489 6 O -0.493 6.493 7 C -0.077 4.077 8 C 0.266 3.734 9 N -0.436 5.436 10 C -0.065 4.065 11 C -0.070 4.070 12 C -0.095 4.095 13 C -0.109 4.109 14 C -0.128 4.128 15 C -0.102 4.102 16 C 0.500 3.500 17 O -0.576 6.576 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.545 4.545 22 H 0.054 0.946 23 C 0.010 3.990 24 N -0.927 5.927 25 Si 0.967 3.033 26 H -0.262 1.262 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.032 0.968 46 H -0.001 1.001 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 8.845 -21.384 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.143 0.857 4 O -0.254 6.254 5 C 0.352 3.648 6 O -0.380 6.380 7 C -0.082 4.082 8 C -0.051 4.051 9 N -0.111 5.111 10 C -0.102 4.102 11 C -0.072 4.072 12 C -0.132 4.132 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.139 4.139 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.330 5.330 19 C -0.075 4.075 20 C 0.140 3.860 21 C -0.584 4.584 22 H 0.073 0.927 23 C -0.189 4.189 24 N -0.567 5.567 25 Si 0.791 3.209 26 H -0.187 1.187 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.050 0.950 46 H 0.017 0.983 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.398 7.431 -21.932 23.160 hybrid contribution 0.594 -0.044 1.402 1.523 sum 0.196 7.387 -20.530 21.819 Atomic orbital electron populations 1.22328 0.89513 1.04231 1.06191 1.22662 0.97688 0.97075 0.80595 0.85690 1.86649 1.76364 1.42323 1.20019 1.22063 0.73629 0.85122 0.83992 1.90654 1.47198 1.15941 1.84169 1.17998 0.92550 1.03054 0.94637 1.26956 0.92766 0.92445 0.92958 1.81257 1.09360 1.10453 1.10029 1.23835 0.90420 0.97268 0.98695 1.22381 0.85052 0.99926 0.99811 1.22076 0.96826 0.93402 1.00901 1.22456 0.94758 1.02372 0.95075 1.22368 0.98767 0.97317 0.98067 1.21843 0.95921 1.01275 0.94847 1.20560 0.80235 0.85448 0.85091 1.90681 1.42198 1.25994 1.86685 1.48041 1.54014 1.25370 1.05607 1.22218 0.96434 0.84524 1.04308 1.18845 0.93940 0.91769 0.81478 1.21681 1.01956 1.23231 1.11490 0.92731 1.25840 1.02406 0.94873 0.95822 1.70049 1.39896 1.29115 1.17634 0.85427 0.78761 0.78315 0.78412 1.18713 1.20702 1.19641 0.91932 0.86830 0.89302 0.82857 0.84066 0.92465 0.88268 0.88539 0.90554 0.89944 0.93580 0.88124 0.94055 0.89892 0.90487 0.89170 0.94966 0.98267 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.27 71.98 0.67 -3.35 16 2 C 0.08 2.47 2.16 29.85 0.06 2.53 16 3 H 0.13 3.52 6.14 -2.38 -0.01 3.50 16 4 O -0.34 -11.38 9.19 -45.12 -0.41 -11.79 16 5 C 0.51 13.94 5.96 71.24 0.42 14.37 16 6 O -0.49 -13.44 15.92 21.98 0.35 -13.09 16 7 C -0.08 -1.65 2.47 -54.85 -0.14 -1.79 16 8 C 0.27 6.54 14.33 89.45 1.28 7.82 16 9 N -0.44 -12.32 18.53 20.00 0.37 -11.95 16 10 C -0.06 -0.76 9.45 30.52 0.29 -0.47 16 11 C -0.07 -1.21 2.43 -51.98 -0.13 -1.34 16 12 C -0.09 -1.45 5.80 31.57 0.18 -1.26 16 13 C -0.11 -1.49 6.91 31.94 0.22 -1.26 16 14 C -0.13 -2.50 6.84 31.72 0.22 -2.28 16 15 C -0.10 -2.10 6.19 31.23 0.19 -1.91 16 16 C 0.50 21.43 7.10 87.66 0.62 22.05 16 17 O -0.58 -31.00 16.09 15.70 0.25 -30.75 16 18 N -0.60 -24.98 2.86 -851.12 -2.43 -27.41 16 19 C 0.07 1.88 8.92 127.77 1.14 3.02 16 20 C 0.26 13.85 5.16 85.63 0.44 14.30 16 21 C -0.55 -30.98 9.39 25.60 0.24 -30.73 16 22 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 23 C 0.01 0.56 5.46 84.66 0.46 1.02 16 24 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 25 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 2.21 5.14 -2.38 -0.01 2.20 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.14 1.36 8.00 -2.38 -0.02 1.35 16 34 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 35 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.19 7.06 -2.39 -0.02 1.17 16 42 H 0.08 1.83 7.04 -2.38 -0.02 1.81 16 43 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 44 H 0.09 1.97 6.06 -2.39 -0.01 1.96 16 45 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 46 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 47 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -79.39 395.02 7.61 -71.78 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.98 Total: 11.54 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.19 Total: 20.69 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -1.78 Total: -94.57 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: 0.19 Total: -55.63 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -79.39 7.61 -71.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.973 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds