Wall clock time and date at job start Tue Mar 31 2020 18:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47189 * 2 1 4 4 O 1.45204 * 109.46900 * 120.00384 * 2 1 3 5 5 C 1.34228 * 116.99942 * 269.99559 * 4 2 1 6 6 O 1.20829 * 119.99836 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99924 * 180.02562 * 5 4 2 8 8 C 1.47202 * 115.56053 * 34.27918 * 7 5 4 9 9 N 5.00852 * 124.63430 * 128.48495 * 2 1 3 10 10 C 1.53094 * 117.51116 * 248.50212 * 7 5 4 11 11 C 1.52553 * 117.51139 * 180.02562 * 7 5 4 12 12 C 1.53877 * 120.82323 * 357.25385 * 11 7 5 13 13 C 1.54995 * 104.06471 * 192.36236 * 12 11 7 14 14 C 1.54918 * 102.81749 * 37.56275 * 13 12 11 15 15 C 1.53481 * 121.09385 * 217.88348 * 11 7 5 16 16 C 1.50699 * 109.46873 * 239.99872 * 2 1 3 17 17 O 1.21281 * 120.00443 * 256.03159 * 16 2 1 18 18 N 1.34783 * 119.99655 * 76.02940 * 16 2 1 19 19 C 1.46494 * 119.99967 * 5.36686 * 18 16 2 20 20 C 1.46502 * 119.99695 * 185.36161 * 18 16 2 21 21 C 1.50702 * 109.47130 * 90.00395 * 20 18 16 22 22 H 1.08001 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99855 * 179.97438 * 21 20 18 24 24 N 1.31511 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99785 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46967 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46908 * 119.99887 * 25 23 21 28 28 H 1.48499 * 109.47363 * 240.00165 * 25 23 21 29 29 H 1.09000 * 109.46894 * 66.13108 * 1 2 3 30 30 H 1.09002 * 109.47400 * 186.13442 * 1 2 3 31 31 H 1.09004 * 109.46704 * 306.13571 * 1 2 3 32 32 H 1.09007 * 117.50572 * 359.97438 * 10 7 5 33 33 H 1.08994 * 117.51098 * 145.08340 * 10 7 5 34 34 H 1.09007 * 110.51047 * 311.00620 * 12 11 7 35 35 H 1.08999 * 110.51254 * 73.71081 * 12 11 7 36 36 H 1.09003 * 110.73662 * 279.23352 * 13 12 11 37 37 H 1.09001 * 110.89903 * 155.97024 * 13 12 11 38 38 H 1.09000 * 110.47917 * 203.59508 * 14 13 12 39 39 H 1.09000 * 110.59143 * 81.02560 * 14 13 12 40 40 H 1.08994 * 110.07186 * 263.31086 * 15 11 7 41 41 H 1.09001 * 110.06714 * 24.78255 * 15 11 7 42 42 H 1.08996 * 109.47566 * 84.82091 * 19 18 16 43 43 H 1.09003 * 109.47115 * 204.81887 * 19 18 16 44 44 H 1.09004 * 109.47203 * 324.81535 * 19 18 16 45 45 H 1.09005 * 109.46759 * 210.00380 * 20 18 16 46 46 H 1.09001 * 109.47248 * 329.99809 * 20 18 16 47 47 H 0.96997 * 119.99976 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1856 5 6 2.2172 0.0638 2.2811 6 8 1.9975 1.2516 2.2506 7 6 2.7193 -0.5773 3.5491 8 6 3.6553 -1.6986 3.3663 9 7 4.3766 -2.5645 3.2258 10 6 1.7553 -0.6465 4.7363 11 6 2.9298 0.3263 4.7601 12 6 2.6972 1.8442 4.6612 13 6 3.3164 2.4059 5.9664 14 6 4.5708 1.5180 6.1615 15 6 4.1151 0.1133 5.7115 16 6 2.0323 -0.7104 -1.2305 17 8 2.4735 -1.8368 -1.1428 18 7 1.9912 -0.0941 -2.4284 19 6 1.5691 1.3059 -2.5177 20 6 2.3688 -0.8242 -3.6411 21 6 1.1505 -1.4917 -4.2254 22 1 0.1911 -1.3833 -3.7415 23 6 1.2609 -2.2408 -5.3776 24 7 2.4293 -2.3732 -5.9665 25 14 -0.2491 -3.0687 -6.1015 26 1 -1.4321 -2.7675 -5.2557 27 1 -0.4817 -2.5589 -7.4767 28 1 -0.0341 -4.5374 -6.1477 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3634 -1.0218 0.1098 31 1 -0.3633 0.6060 0.8300 32 1 0.7581 -0.2278 4.6001 33 1 1.8139 -1.5225 5.3821 34 1 3.2081 2.2529 3.7893 35 1 1.6307 2.0652 4.6184 36 1 2.6267 2.2889 6.8023 37 1 3.5988 3.4516 5.8441 38 1 4.8692 1.5046 7.2098 39 1 5.3914 1.8711 5.5369 40 1 3.8009 -0.4726 6.5753 41 1 4.9264 -0.3950 5.1904 42 1 2.4230 1.9558 -2.3267 43 1 1.1776 1.5044 -3.5154 44 1 0.7926 1.4992 -1.7776 45 1 2.7861 -0.1283 -4.3690 46 1 3.1136 -1.5804 -3.3929 47 1 2.5068 -2.8999 -6.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837906980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:35 Heat of formation + Delta-G solvation = -63.075670 kcal Electronic energy + Delta-G solvation = -29126.483206 eV Core-core repulsion = 25082.720217 eV Total energy + Delta-G solvation = -4043.762989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43759 -39.83084 -38.70157 -36.64018 -36.44712 -34.92268 -34.62147 -32.85912 -31.66866 -29.15482 -27.83862 -27.11391 -26.09284 -25.38690 -24.35621 -22.81609 -21.70710 -21.03433 -19.91197 -18.94803 -18.71235 -16.96206 -16.68571 -16.56099 -16.24645 -16.00004 -15.77108 -15.28157 -14.78327 -14.47401 -14.38664 -14.13514 -13.75907 -13.55262 -13.39971 -13.32211 -13.03206 -12.86643 -12.71898 -12.63194 -12.37268 -12.21097 -12.11070 -11.79038 -11.61597 -11.51486 -11.49865 -11.40617 -11.26563 -10.98591 -10.91472 -10.89815 -10.80558 -10.66496 -10.60830 -10.20521 -10.19290 -9.66590 -8.95595 -8.47692 -7.75094 -6.08245 -4.13711 1.62549 2.07343 2.28062 2.60047 3.19466 3.25604 3.27564 3.35219 3.35785 3.39175 3.71272 3.99568 4.09905 4.20540 4.33566 4.40545 4.55663 4.72251 4.78555 4.94944 5.01508 5.03922 5.08591 5.11694 5.23157 5.26462 5.27564 5.36660 5.47501 5.48781 5.58263 5.60555 5.66023 5.72020 5.78724 5.83053 5.90473 6.01618 6.05184 6.19521 6.26172 6.95221 7.26881 7.37902 7.42998 7.51528 7.87577 8.17041 8.25731 8.81002 8.95970 9.51545 10.99978 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002564 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.630036 B =10919.289971 C =11302.923615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.508 3.492 6 O -0.488 6.488 7 C -0.050 4.050 8 C 0.238 3.762 9 N -0.392 5.392 10 C -0.107 4.107 11 C -0.061 4.061 12 C -0.082 4.082 13 C -0.125 4.125 14 C -0.122 4.122 15 C -0.096 4.096 16 C 0.508 3.492 17 O -0.518 6.518 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 12.710 25.098 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.232 6.232 5 C 0.349 3.651 6 O -0.375 6.375 7 C -0.055 4.055 8 C -0.080 4.080 9 N -0.066 5.066 10 C -0.145 4.145 11 C -0.063 4.063 12 C -0.119 4.119 13 C -0.163 4.163 14 C -0.160 4.160 15 C -0.134 4.134 16 C 0.292 3.708 17 O -0.393 6.393 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.904 11.040 24.670 27.042 hybrid contribution -1.125 -0.210 -0.858 1.430 sum -2.029 10.829 23.812 26.237 Atomic orbital electron populations 1.22175 0.91772 1.04296 1.03963 1.22779 0.96268 0.97362 0.82319 0.87668 1.86646 1.75935 1.41224 1.19434 1.21674 0.74440 0.85057 0.83914 1.90667 1.48123 1.15231 1.83492 1.17789 1.02122 0.96288 0.89255 1.26840 0.93528 0.93058 0.94576 1.81274 1.09683 1.09701 1.05963 1.23457 0.95551 1.02011 0.93444 1.22204 0.97993 0.94582 0.91510 1.22036 1.02284 0.89155 0.98461 1.22553 0.96859 0.99300 0.97567 1.22352 0.98194 0.94078 1.01370 1.21798 0.95319 0.98563 0.97688 1.19746 0.80352 0.86897 0.83797 1.90722 1.44955 1.18389 1.85257 1.48079 1.65307 1.11923 1.07655 1.21838 0.98982 0.82630 1.03599 1.19386 0.96746 0.92104 0.79134 1.21449 0.94770 1.31450 1.09108 0.92290 1.24946 0.96279 0.96121 0.96765 1.69940 1.23167 1.40435 1.19636 0.86427 0.82755 0.79408 0.78738 1.19761 1.20912 1.20830 0.89283 0.90533 0.91079 0.85742 0.85998 0.89222 0.90301 0.91188 0.91009 0.91160 0.91218 0.90185 0.91054 0.93408 0.90017 0.92232 0.94571 0.93595 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.19 37.16 0.34 -1.87 16 2 C 0.07 1.16 2.14 -27.88 -0.06 1.10 16 3 H 0.11 1.51 6.31 -51.93 -0.33 1.19 16 4 O -0.32 -5.30 9.14 -45.74 -0.42 -5.72 16 5 C 0.51 6.74 7.45 36.00 0.27 7.01 16 6 O -0.49 -6.28 12.93 -18.75 -0.24 -6.52 16 7 C -0.05 -0.53 2.52 -158.63 -0.40 -0.93 16 8 C 0.24 3.26 13.60 -20.77 -0.28 2.98 16 9 N -0.39 -6.36 18.54 42.14 0.78 -5.58 16 10 C -0.11 -0.71 9.62 -26.93 -0.26 -0.97 16 11 C -0.06 -0.47 2.43 -154.28 -0.37 -0.84 16 12 C -0.08 -0.60 4.77 -25.22 -0.12 -0.72 16 13 C -0.13 -0.68 6.91 -24.67 -0.17 -0.85 16 14 C -0.12 -0.69 6.84 -24.99 -0.17 -0.86 16 15 C -0.10 -0.64 6.18 -25.76 -0.16 -0.80 16 16 C 0.51 10.99 6.95 -10.98 -0.08 10.91 16 17 O -0.52 -13.79 16.13 -13.54 -0.22 -14.01 16 18 N -0.60 -12.68 2.86 -182.95 -0.52 -13.20 16 19 C 0.07 1.13 9.79 59.84 0.59 1.72 16 20 C 0.24 6.42 5.18 -5.19 -0.03 6.40 16 21 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 25 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.09 1.15 6.33 -51.93 -0.33 0.82 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.81 6.98 -51.93 -0.36 0.45 16 35 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.58 7.26 -51.93 -0.38 0.21 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 44 H 0.06 0.75 4.92 -51.93 -0.26 0.49 16 45 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 46 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -35.65 392.94 -7.37 -43.02 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.06 Total: -3.51 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.32 Total: 8.72 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.99 Total: -44.63 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.88 Total: -26.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.65 -7.37 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.057 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds