Wall clock time and date at job start Tue Mar 31 2020 18:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47189 * 2 1 4 4 O 1.45204 * 109.46900 * 120.00384 * 2 1 3 5 5 C 1.34228 * 116.99942 * 269.99559 * 4 2 1 6 6 O 1.20829 * 119.99836 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99924 * 180.02562 * 5 4 2 8 8 C 1.47202 * 115.56053 * 34.27918 * 7 5 4 9 9 N 5.00852 * 124.63430 * 128.48495 * 2 1 3 10 10 C 1.53094 * 117.51116 * 248.50212 * 7 5 4 11 11 C 1.52553 * 117.51139 * 180.02562 * 7 5 4 12 12 C 1.53877 * 120.82323 * 357.25385 * 11 7 5 13 13 C 1.54995 * 104.06471 * 192.36236 * 12 11 7 14 14 C 1.54918 * 102.81749 * 37.56275 * 13 12 11 15 15 C 1.53481 * 121.09385 * 217.88348 * 11 7 5 16 16 C 1.50699 * 109.46873 * 239.99872 * 2 1 3 17 17 O 1.21281 * 120.00443 * 256.03159 * 16 2 1 18 18 N 1.34783 * 119.99655 * 76.02940 * 16 2 1 19 19 C 1.46494 * 119.99967 * 5.36686 * 18 16 2 20 20 C 1.46502 * 119.99695 * 185.36161 * 18 16 2 21 21 C 1.50702 * 109.47130 * 90.00395 * 20 18 16 22 22 H 1.08001 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99855 * 179.97438 * 21 20 18 24 24 N 1.31511 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99785 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46967 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46908 * 119.99887 * 25 23 21 28 28 H 1.48499 * 109.47363 * 240.00165 * 25 23 21 29 29 H 1.09000 * 109.46894 * 66.13108 * 1 2 3 30 30 H 1.09002 * 109.47400 * 186.13442 * 1 2 3 31 31 H 1.09004 * 109.46704 * 306.13571 * 1 2 3 32 32 H 1.09007 * 117.50572 * 359.97438 * 10 7 5 33 33 H 1.08994 * 117.51098 * 145.08340 * 10 7 5 34 34 H 1.09007 * 110.51047 * 311.00620 * 12 11 7 35 35 H 1.08999 * 110.51254 * 73.71081 * 12 11 7 36 36 H 1.09003 * 110.73662 * 279.23352 * 13 12 11 37 37 H 1.09001 * 110.89903 * 155.97024 * 13 12 11 38 38 H 1.09000 * 110.47917 * 203.59508 * 14 13 12 39 39 H 1.09000 * 110.59143 * 81.02560 * 14 13 12 40 40 H 1.08994 * 110.07186 * 263.31086 * 15 11 7 41 41 H 1.09001 * 110.06714 * 24.78255 * 15 11 7 42 42 H 1.08996 * 109.47566 * 84.82091 * 19 18 16 43 43 H 1.09003 * 109.47115 * 204.81887 * 19 18 16 44 44 H 1.09004 * 109.47203 * 324.81535 * 19 18 16 45 45 H 1.09005 * 109.46759 * 210.00380 * 20 18 16 46 46 H 1.09001 * 109.47248 * 329.99809 * 20 18 16 47 47 H 0.96997 * 119.99976 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1856 5 6 2.2172 0.0638 2.2811 6 8 1.9975 1.2516 2.2506 7 6 2.7193 -0.5773 3.5491 8 6 3.6553 -1.6986 3.3663 9 7 4.3766 -2.5645 3.2258 10 6 1.7553 -0.6465 4.7363 11 6 2.9298 0.3263 4.7601 12 6 2.6972 1.8442 4.6612 13 6 3.3164 2.4059 5.9664 14 6 4.5708 1.5180 6.1615 15 6 4.1151 0.1133 5.7115 16 6 2.0323 -0.7104 -1.2305 17 8 2.4735 -1.8368 -1.1428 18 7 1.9912 -0.0941 -2.4284 19 6 1.5691 1.3059 -2.5177 20 6 2.3688 -0.8242 -3.6411 21 6 1.1505 -1.4917 -4.2254 22 1 0.1911 -1.3833 -3.7415 23 6 1.2609 -2.2408 -5.3776 24 7 2.4293 -2.3732 -5.9665 25 14 -0.2491 -3.0687 -6.1015 26 1 -1.4321 -2.7675 -5.2557 27 1 -0.4817 -2.5589 -7.4767 28 1 -0.0341 -4.5374 -6.1477 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3634 -1.0218 0.1098 31 1 -0.3633 0.6060 0.8300 32 1 0.7581 -0.2278 4.6001 33 1 1.8139 -1.5225 5.3821 34 1 3.2081 2.2529 3.7893 35 1 1.6307 2.0652 4.6184 36 1 2.6267 2.2889 6.8023 37 1 3.5988 3.4516 5.8441 38 1 4.8692 1.5046 7.2098 39 1 5.3914 1.8711 5.5369 40 1 3.8009 -0.4726 6.5753 41 1 4.9264 -0.3950 5.1904 42 1 2.4230 1.9558 -2.3267 43 1 1.1776 1.5044 -3.5154 44 1 0.7926 1.4992 -1.7776 45 1 2.7861 -0.1283 -4.3690 46 1 3.1136 -1.5804 -3.3929 47 1 2.5068 -2.8999 -6.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837906980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:34 Heat of formation + Delta-G solvation = -84.067787 kcal Electronic energy + Delta-G solvation = -29127.393493 eV Core-core repulsion = 25082.720217 eV Total energy + Delta-G solvation = -4044.673276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40613 -41.05449 -39.95946 -37.77017 -37.45572 -36.73294 -35.31888 -34.88127 -33.06449 -29.75289 -29.65961 -27.91523 -27.56244 -26.14006 -25.80106 -24.37822 -22.79776 -21.70788 -20.64865 -20.34697 -19.73951 -18.72668 -18.24989 -17.87952 -17.32073 -17.08154 -16.92365 -16.39295 -16.22729 -16.17847 -15.34762 -14.98573 -14.95145 -14.63763 -14.56146 -14.33757 -14.22548 -14.06040 -13.79936 -13.67027 -13.59512 -13.47540 -13.32400 -13.28958 -13.12515 -12.85618 -12.69411 -12.53696 -12.24537 -12.21798 -12.01201 -11.98004 -11.95608 -11.71452 -11.59318 -11.47277 -11.31623 -10.93467 -10.68304 -10.65746 -9.55946 -8.25957 -6.41132 0.67252 1.02055 1.31083 1.35487 1.38268 1.49254 1.51404 1.58083 2.24478 2.37799 2.40360 2.60275 3.04459 3.16711 3.32675 3.37040 3.51576 3.69175 3.81327 3.81778 3.84112 4.27929 4.28320 4.47966 4.54955 4.59255 4.59814 4.64426 4.64870 4.73850 4.78597 4.86216 4.89573 4.92312 4.98524 5.09445 5.14219 5.16219 5.17911 5.29610 5.32708 5.42329 5.48631 5.58377 5.75051 5.99640 6.21920 6.41471 6.57408 6.68338 7.16436 7.32675 8.82092 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002564 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.630036 B =10919.289971 C =11302.923615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 H 0.129 0.871 4 O -0.347 6.347 5 C 0.508 3.492 6 O -0.483 6.483 7 C -0.082 4.082 8 C 0.259 3.741 9 N -0.452 5.452 10 C -0.077 4.077 11 C -0.050 4.050 12 C -0.084 4.084 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.099 4.099 16 C 0.496 3.504 17 O -0.584 6.584 18 N -0.600 5.600 19 C 0.066 3.934 20 C 0.257 3.743 21 C -0.542 4.542 22 H 0.060 0.940 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.971 3.029 26 H -0.262 1.262 27 H -0.268 1.268 28 H -0.285 1.285 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.031 0.969 46 H -0.005 1.005 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 14.896 27.413 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.147 0.853 4 O -0.263 6.263 5 C 0.350 3.650 6 O -0.370 6.370 7 C -0.087 4.087 8 C -0.058 4.058 9 N -0.127 5.127 10 C -0.115 4.115 11 C -0.052 4.052 12 C -0.121 4.121 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.136 4.136 16 C 0.284 3.716 17 O -0.464 6.464 18 N -0.332 5.332 19 C -0.076 4.076 20 C 0.136 3.864 21 C -0.580 4.580 22 H 0.078 0.922 23 C -0.194 4.194 24 N -0.570 5.570 25 Si 0.795 3.205 26 H -0.186 1.186 27 H -0.193 1.193 28 H -0.211 1.211 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.049 0.951 46 H 0.013 0.987 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.764 13.305 27.003 30.337 hybrid contribution -0.164 -0.812 -1.535 1.744 sum -3.928 12.492 25.468 28.637 Atomic orbital electron populations 1.22198 0.89159 1.04308 1.05852 1.22656 0.97893 0.96953 0.80050 0.85337 1.86654 1.76719 1.42670 1.20282 1.22021 0.74259 0.85116 0.83604 1.90658 1.48149 1.14789 1.83364 1.18139 1.04238 0.96847 0.89500 1.27429 0.92746 0.92703 0.92930 1.81274 1.11839 1.11873 1.07730 1.23814 0.95785 1.02101 0.89805 1.22424 0.98888 0.94845 0.89012 1.22051 1.02718 0.88626 0.98691 1.22539 0.96688 0.99289 0.97011 1.22370 0.98160 0.93378 1.02085 1.21874 0.94403 0.99401 0.97947 1.20790 0.79058 0.86425 0.85372 1.90680 1.47800 1.21482 1.86449 1.48074 1.64850 1.13941 1.06326 1.22187 1.01136 0.79313 1.04929 1.18871 0.95250 0.91282 0.80950 1.21718 0.95109 1.31853 1.09356 0.92153 1.25916 0.99536 0.96675 0.97238 1.70067 1.25482 1.41226 1.20194 0.85320 0.78930 0.77767 0.78514 1.18580 1.19309 1.21084 0.88493 0.91931 0.87526 0.83381 0.83931 0.91340 0.89415 0.89417 0.90556 0.89584 0.92296 0.88158 0.93173 0.90913 0.90071 0.88580 0.95119 0.98705 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.19 71.98 0.66 -3.19 16 2 C 0.08 2.59 2.14 29.85 0.06 2.66 16 3 H 0.13 3.39 6.31 -2.39 -0.02 3.37 16 4 O -0.35 -11.52 9.14 -45.19 -0.41 -11.94 16 5 C 0.51 12.81 7.45 71.23 0.53 13.34 16 6 O -0.48 -11.28 12.93 21.96 0.28 -11.00 16 7 C -0.08 -1.66 2.52 -54.85 -0.14 -1.80 16 8 C 0.26 7.24 13.60 89.45 1.22 8.45 16 9 N -0.45 -15.43 18.54 20.00 0.37 -15.06 16 10 C -0.08 -0.77 9.62 30.47 0.29 -0.47 16 11 C -0.05 -0.65 2.43 -52.03 -0.13 -0.77 16 12 C -0.08 -0.99 4.77 31.57 0.15 -0.84 16 13 C -0.12 -0.91 6.91 31.93 0.22 -0.69 16 14 C -0.12 -1.12 6.84 31.72 0.22 -0.90 16 15 C -0.10 -1.14 6.18 31.23 0.19 -0.94 16 16 C 0.50 22.05 6.95 87.66 0.61 22.66 16 17 O -0.58 -33.04 16.13 15.22 0.25 -32.79 16 18 N -0.60 -25.95 2.86 -851.12 -2.43 -28.38 16 19 C 0.07 1.92 9.79 127.77 1.25 3.17 16 20 C 0.26 14.14 5.18 85.63 0.44 14.59 16 21 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 22 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 23 C 0.01 0.31 5.46 84.65 0.46 0.77 16 24 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 25 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 H 0.10 2.19 6.33 -2.39 -0.02 2.18 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.15 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.13 6.98 -2.38 -0.02 1.11 16 35 H 0.09 0.89 8.01 -2.39 -0.02 0.87 16 36 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.81 7.26 -2.39 -0.02 0.79 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.40 8.03 -2.39 -0.02 2.38 16 44 H 0.10 2.10 4.92 -2.39 -0.01 2.09 16 45 H 0.03 1.69 8.07 -2.38 -0.02 1.67 16 46 H -0.01 -0.34 7.36 -2.39 -0.02 -0.35 16 47 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -84.01 392.94 7.64 -76.38 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.98 Total: 7.45 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.29 Total: 25.10 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -1.78 Total: -100.11 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: 0.12 Total: -55.73 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -84.01 7.64 -76.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.691 kcal (2) G-P(sol) polarization free energy of solvation -84.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds