Wall clock time and date at job start Tue Mar 31 2020 18:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47432 * 2 1 4 4 O 1.45198 * 109.47246 * 120.00078 * 2 1 3 5 5 C 1.34223 * 116.99762 * 270.00144 * 4 2 1 6 6 O 1.20822 * 120.00717 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99867 * 179.97438 * 5 4 2 8 8 C 1.47199 * 115.55898 * 56.26939 * 7 5 4 9 9 N 5.14496 * 131.82455 * 119.56676 * 2 1 3 10 10 C 1.53086 * 117.51303 * 201.99077 * 7 5 4 11 11 C 1.52560 * 117.54053 * 270.50064 * 7 5 4 12 12 C 1.53876 * 120.82480 * 142.34819 * 11 7 5 13 13 C 1.54991 * 104.06009 * 192.35223 * 12 11 7 14 14 C 1.54925 * 102.82051 * 37.56947 * 13 12 11 15 15 C 1.53483 * 121.09141 * 2.97585 * 11 7 5 16 16 C 1.50706 * 109.46744 * 239.99759 * 2 1 3 17 17 O 1.21278 * 119.99741 * 259.33369 * 16 2 1 18 18 N 1.34779 * 119.99873 * 79.34474 * 16 2 1 19 19 C 1.46503 * 119.99950 * 355.01735 * 18 16 2 20 20 C 1.46493 * 119.99776 * 175.02383 * 18 16 2 21 21 C 1.50702 * 109.47397 * 89.99771 * 20 18 16 22 22 H 1.08000 * 119.99530 * 359.97438 * 21 20 18 23 23 C 1.37872 * 120.00173 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99807 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00032 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47405 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47263 * 119.99735 * 25 23 21 28 28 H 1.48501 * 109.47280 * 239.99801 * 25 23 21 29 29 H 1.09004 * 109.47445 * 66.71082 * 1 2 3 30 30 H 1.08991 * 109.47539 * 186.71492 * 1 2 3 31 31 H 1.09000 * 109.46980 * 306.71835 * 1 2 3 32 32 H 1.09000 * 117.51345 * 214.94953 * 10 7 5 33 33 H 1.09004 * 117.50736 * 359.97438 * 10 7 5 34 34 H 1.08993 * 110.51040 * 310.99722 * 12 11 7 35 35 H 1.09001 * 110.50936 * 73.71072 * 12 11 7 36 36 H 1.09004 * 110.74244 * 279.23734 * 13 12 11 37 37 H 1.08996 * 110.89789 * 155.97959 * 13 12 11 38 38 H 1.08995 * 110.48086 * 203.59499 * 14 13 12 39 39 H 1.08994 * 110.59096 * 81.01849 * 14 13 12 40 40 H 1.09005 * 110.06770 * 263.32243 * 15 11 7 41 41 H 1.09000 * 110.06820 * 24.79165 * 15 11 7 42 42 H 1.08996 * 109.47148 * 94.12393 * 19 18 16 43 43 H 1.08996 * 109.47020 * 214.13171 * 19 18 16 44 44 H 1.09005 * 109.47097 * 334.12745 * 19 18 16 45 45 H 1.09000 * 109.46780 * 209.99397 * 20 18 16 46 46 H 1.08990 * 109.47264 * 329.99322 * 20 18 16 47 47 H 0.97005 * 119.99443 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2810 6 8 1.9982 1.2518 2.2504 7 6 2.7182 -0.5772 3.5494 8 6 3.9835 -1.3197 3.4287 9 7 4.9609 -1.8918 3.3347 10 6 2.4522 0.1572 4.8660 11 6 1.6775 -1.1129 4.5279 12 6 1.9247 -2.4170 5.3063 13 6 0.5407 -2.7617 5.9127 14 6 -0.4405 -2.3473 4.7876 15 6 0.1794 -1.0622 4.1980 16 6 2.0322 -0.7105 -1.2305 17 8 2.4176 -1.8578 -1.1534 18 7 2.0533 -0.0708 -2.4166 19 6 1.4877 1.2757 -2.5328 20 6 2.6417 -0.7219 -3.5896 21 6 1.5783 -1.5045 -4.3160 22 1 0.5656 -1.5161 -3.9411 23 6 1.8986 -2.2066 -5.4586 24 7 3.1320 -2.1929 -5.9148 25 14 0.5806 -3.1773 -6.3586 26 1 -0.7144 -3.0319 -5.6465 27 1 0.4448 -2.6608 -7.7442 28 1 0.9637 -4.6115 -6.4002 29 1 -0.3634 0.4063 -0.9439 30 1 -0.3634 -1.0205 0.1202 31 1 -0.3633 0.6144 0.8238 32 1 3.2142 0.0905 5.6426 33 1 1.9152 1.1043 4.8145 34 1 2.2539 -3.2076 4.6320 35 1 2.6586 -2.2571 6.0961 36 1 0.3595 -2.1800 6.8165 37 1 0.4619 -3.8289 6.1200 38 1 -1.4279 -2.1400 5.1999 39 1 -0.5016 -3.1252 4.0265 40 1 -0.2749 -0.1835 4.6559 41 1 0.0349 -1.0377 3.1179 42 1 2.2779 2.0145 -2.3994 43 1 1.0390 1.3974 -3.5186 44 1 0.7253 1.4169 -1.7667 45 1 3.0548 0.0351 -4.2562 46 1 3.4355 -1.3971 -3.2704 47 1 3.3572 -2.6866 -6.7189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837906984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:38 Heat of formation + Delta-G solvation = -63.733461 kcal Electronic energy + Delta-G solvation = -29338.711292 eV Core-core repulsion = 25294.919778 eV Total energy + Delta-G solvation = -4043.791513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42568 -39.81711 -38.76002 -36.65801 -36.55521 -34.92411 -34.59036 -32.87395 -31.69646 -29.24274 -27.81335 -27.04641 -26.16891 -25.53395 -24.28412 -22.84424 -21.77155 -20.80267 -19.91622 -19.06571 -18.87236 -17.07380 -16.89478 -16.56970 -16.16246 -15.97564 -15.74309 -15.29536 -14.61797 -14.51905 -14.41504 -14.01462 -13.81809 -13.68570 -13.49392 -13.25983 -13.02535 -12.94425 -12.74128 -12.69477 -12.43815 -12.20271 -12.11821 -11.75184 -11.67604 -11.53349 -11.48768 -11.42839 -11.26419 -10.97354 -10.94778 -10.89969 -10.85464 -10.81034 -10.61175 -10.25845 -10.18413 -9.65413 -8.95941 -8.46560 -7.75557 -6.07040 -4.11977 1.59497 2.02305 2.19017 2.59498 3.19268 3.25460 3.28582 3.33037 3.36553 3.40342 3.70608 3.95269 4.10998 4.15845 4.27951 4.41888 4.52394 4.73208 4.76275 4.91278 4.99127 5.02377 5.05749 5.13972 5.21845 5.26148 5.27698 5.39462 5.41322 5.44581 5.53851 5.55609 5.61893 5.70887 5.71685 5.79851 5.84922 5.97313 6.01448 6.17810 6.19677 6.94689 7.21628 7.36053 7.40809 7.48132 7.88573 8.18078 8.25522 8.81690 8.96413 9.53014 11.01290 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.002836 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.407968 B = 9869.395478 C =10094.029042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.315 6.315 5 C 0.510 3.490 6 O -0.489 6.489 7 C -0.048 4.048 8 C 0.241 3.759 9 N -0.393 5.393 10 C -0.100 4.100 11 C -0.071 4.071 12 C -0.096 4.096 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.097 4.097 16 C 0.506 3.494 17 O -0.514 6.514 18 N -0.596 5.596 19 C 0.071 3.929 20 C 0.247 3.753 21 C -0.526 4.526 22 H 0.059 0.941 23 C 0.060 3.940 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 7.410 24.503 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.229 6.229 5 C 0.350 3.650 6 O -0.375 6.375 7 C -0.053 4.053 8 C -0.077 4.077 9 N -0.067 5.067 10 C -0.138 4.138 11 C -0.072 4.072 12 C -0.134 4.134 13 C -0.157 4.157 14 C -0.160 4.160 15 C -0.134 4.134 16 C 0.290 3.710 17 O -0.389 6.389 18 N -0.330 5.330 19 C -0.073 4.073 20 C 0.128 3.872 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.412 6.201 24.149 25.744 hybrid contribution -0.875 -0.099 -0.955 1.299 sum -7.287 6.103 23.194 25.066 Atomic orbital electron populations 1.22229 0.91877 1.04312 1.04041 1.22808 0.96253 0.97419 0.82434 0.87701 1.86651 1.75884 1.41078 1.19306 1.21636 0.74403 0.85003 0.83954 1.90674 1.47835 1.15439 1.83590 1.17759 0.91525 1.05724 0.90303 1.26809 0.92678 0.93600 0.94629 1.81308 1.10810 1.08542 1.06060 1.23511 1.01789 0.97287 0.91253 1.22230 0.92847 0.96698 0.95462 1.22056 0.98473 0.94135 0.98694 1.22463 0.93630 1.01539 0.98059 1.22359 0.98632 0.96915 0.98103 1.21820 0.90090 0.99549 1.01980 1.19739 0.80436 0.87081 0.83747 1.90727 1.46657 1.16463 1.85060 1.48094 1.58661 1.16290 1.09934 1.21883 0.97972 0.84037 1.03385 1.19357 0.94354 0.93075 0.80401 1.21438 0.95806 1.30170 1.09095 0.92269 1.24947 0.95643 0.96374 0.97198 1.69945 1.17794 1.42353 1.23225 0.86420 0.81694 0.79925 0.79243 1.19764 1.20947 1.20847 0.89216 0.90423 0.91037 0.86102 0.85268 0.90167 0.90615 0.90950 0.90906 0.90948 0.90864 0.89978 0.90666 0.93296 0.90239 0.91914 0.94552 0.93855 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.16 37.16 0.34 -1.80 16 2 C 0.07 1.12 2.14 -27.88 -0.06 1.06 16 3 H 0.11 1.54 6.42 -51.93 -0.33 1.20 16 4 O -0.31 -5.19 9.48 -45.65 -0.43 -5.62 16 5 C 0.51 6.94 5.96 36.01 0.21 7.15 16 6 O -0.49 -6.79 15.71 -18.75 -0.29 -7.08 16 7 C -0.05 -0.53 2.49 -158.63 -0.40 -0.92 16 8 C 0.24 3.27 14.32 -20.75 -0.30 2.97 16 9 N -0.39 -6.22 18.54 42.17 0.78 -5.44 16 10 C -0.10 -0.68 9.42 -26.91 -0.25 -0.94 16 11 C -0.07 -0.56 2.43 -154.25 -0.37 -0.93 16 12 C -0.10 -0.68 5.80 -25.22 -0.15 -0.83 16 13 C -0.12 -0.66 6.91 -24.66 -0.17 -0.83 16 14 C -0.12 -0.76 6.84 -24.99 -0.17 -0.93 16 15 C -0.10 -0.70 6.19 -25.76 -0.16 -0.86 16 16 C 0.51 10.87 6.94 -10.98 -0.08 10.79 16 17 O -0.51 -13.55 16.24 -13.26 -0.22 -13.77 16 18 N -0.60 -12.68 2.86 -182.96 -0.52 -13.20 16 19 C 0.07 1.10 9.87 59.85 0.59 1.69 16 20 C 0.25 6.47 5.14 -5.20 -0.03 6.45 16 21 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 22 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 25 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 29 H 0.09 1.08 6.09 -51.93 -0.32 0.76 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.66 7.25 -51.93 -0.38 0.29 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.06 0.78 4.53 -51.93 -0.24 0.54 16 45 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 46 H 0.04 1.29 7.50 -51.93 -0.39 0.90 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -35.85 396.83 -7.48 -43.33 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -7.09 Total: -3.59 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.40 Total: 8.51 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 1.00 Total: -44.57 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.94 Total: -26.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.85 -7.48 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.399 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds