Wall clock time and date at job start Tue Mar 31 2020 18:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47432 * 2 1 4 4 O 1.45198 * 109.47246 * 120.00078 * 2 1 3 5 5 C 1.34223 * 116.99762 * 270.00144 * 4 2 1 6 6 O 1.20822 * 120.00717 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99867 * 179.97438 * 5 4 2 8 8 C 1.47199 * 115.55898 * 56.26939 * 7 5 4 9 9 N 5.14496 * 131.82455 * 119.56676 * 2 1 3 10 10 C 1.53086 * 117.51303 * 201.99077 * 7 5 4 11 11 C 1.52560 * 117.54053 * 270.50064 * 7 5 4 12 12 C 1.53876 * 120.82480 * 142.34819 * 11 7 5 13 13 C 1.54991 * 104.06009 * 192.35223 * 12 11 7 14 14 C 1.54925 * 102.82051 * 37.56947 * 13 12 11 15 15 C 1.53483 * 121.09141 * 2.97585 * 11 7 5 16 16 C 1.50706 * 109.46744 * 239.99759 * 2 1 3 17 17 O 1.21278 * 119.99741 * 259.33369 * 16 2 1 18 18 N 1.34779 * 119.99873 * 79.34474 * 16 2 1 19 19 C 1.46503 * 119.99950 * 355.01735 * 18 16 2 20 20 C 1.46493 * 119.99776 * 175.02383 * 18 16 2 21 21 C 1.50702 * 109.47397 * 89.99771 * 20 18 16 22 22 H 1.08000 * 119.99530 * 359.97438 * 21 20 18 23 23 C 1.37872 * 120.00173 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99807 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00032 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47405 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47263 * 119.99735 * 25 23 21 28 28 H 1.48501 * 109.47280 * 239.99801 * 25 23 21 29 29 H 1.09004 * 109.47445 * 66.71082 * 1 2 3 30 30 H 1.08991 * 109.47539 * 186.71492 * 1 2 3 31 31 H 1.09000 * 109.46980 * 306.71835 * 1 2 3 32 32 H 1.09000 * 117.51345 * 214.94953 * 10 7 5 33 33 H 1.09004 * 117.50736 * 359.97438 * 10 7 5 34 34 H 1.08993 * 110.51040 * 310.99722 * 12 11 7 35 35 H 1.09001 * 110.50936 * 73.71072 * 12 11 7 36 36 H 1.09004 * 110.74244 * 279.23734 * 13 12 11 37 37 H 1.08996 * 110.89789 * 155.97959 * 13 12 11 38 38 H 1.08995 * 110.48086 * 203.59499 * 14 13 12 39 39 H 1.08994 * 110.59096 * 81.01849 * 14 13 12 40 40 H 1.09005 * 110.06770 * 263.32243 * 15 11 7 41 41 H 1.09000 * 110.06820 * 24.79165 * 15 11 7 42 42 H 1.08996 * 109.47148 * 94.12393 * 19 18 16 43 43 H 1.08996 * 109.47020 * 214.13171 * 19 18 16 44 44 H 1.09005 * 109.47097 * 334.12745 * 19 18 16 45 45 H 1.09000 * 109.46780 * 209.99397 * 20 18 16 46 46 H 1.08990 * 109.47264 * 329.99322 * 20 18 16 47 47 H 0.97005 * 119.99443 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2810 6 8 1.9982 1.2518 2.2504 7 6 2.7182 -0.5772 3.5494 8 6 3.9835 -1.3197 3.4287 9 7 4.9609 -1.8918 3.3347 10 6 2.4522 0.1572 4.8660 11 6 1.6775 -1.1129 4.5279 12 6 1.9247 -2.4170 5.3063 13 6 0.5407 -2.7617 5.9127 14 6 -0.4405 -2.3473 4.7876 15 6 0.1794 -1.0622 4.1980 16 6 2.0322 -0.7105 -1.2305 17 8 2.4176 -1.8578 -1.1534 18 7 2.0533 -0.0708 -2.4166 19 6 1.4877 1.2757 -2.5328 20 6 2.6417 -0.7219 -3.5896 21 6 1.5783 -1.5045 -4.3160 22 1 0.5656 -1.5161 -3.9411 23 6 1.8986 -2.2066 -5.4586 24 7 3.1320 -2.1929 -5.9148 25 14 0.5806 -3.1773 -6.3586 26 1 -0.7144 -3.0319 -5.6465 27 1 0.4448 -2.6608 -7.7442 28 1 0.9637 -4.6115 -6.4002 29 1 -0.3634 0.4063 -0.9439 30 1 -0.3634 -1.0205 0.1202 31 1 -0.3633 0.6144 0.8238 32 1 3.2142 0.0905 5.6426 33 1 1.9152 1.1043 4.8145 34 1 2.2539 -3.2076 4.6320 35 1 2.6586 -2.2571 6.0961 36 1 0.3595 -2.1800 6.8165 37 1 0.4619 -3.8289 6.1200 38 1 -1.4279 -2.1400 5.1999 39 1 -0.5016 -3.1252 4.0265 40 1 -0.2749 -0.1835 4.6559 41 1 0.0349 -1.0377 3.1179 42 1 2.2779 2.0145 -2.3994 43 1 1.0390 1.3974 -3.5186 44 1 0.7253 1.4169 -1.7667 45 1 3.0548 0.0351 -4.2562 46 1 3.4355 -1.3971 -3.2704 47 1 3.3572 -2.6866 -6.7189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837906984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:37 Heat of formation + Delta-G solvation = -84.699401 kcal Electronic energy + Delta-G solvation = -29339.620443 eV Core-core repulsion = 25294.919778 eV Total energy + Delta-G solvation = -4044.700665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42875 -41.02814 -40.00807 -37.79826 -37.59801 -36.73347 -35.29393 -34.89225 -33.10055 -29.76735 -29.72790 -27.87521 -27.59352 -26.32671 -25.76253 -24.35073 -22.89598 -21.46750 -20.53803 -20.50784 -20.03427 -18.73092 -18.33709 -17.95814 -17.51802 -17.06292 -16.85030 -16.39285 -16.23120 -16.11141 -15.34132 -15.00254 -14.89440 -14.78785 -14.50486 -14.40454 -14.25832 -14.09933 -13.83660 -13.67866 -13.62164 -13.51023 -13.38067 -13.28347 -13.09438 -12.88477 -12.69194 -12.49864 -12.30771 -12.23300 -12.05761 -12.00041 -11.93703 -11.77531 -11.71242 -11.56592 -11.40146 -10.95701 -10.68721 -10.66821 -9.56771 -8.25772 -6.40504 0.57892 0.95974 1.24626 1.35333 1.38315 1.48237 1.49884 1.60928 2.22711 2.37880 2.41553 2.55916 3.04584 3.13001 3.33600 3.35392 3.45422 3.66101 3.73775 3.78620 3.80364 4.23182 4.27175 4.44082 4.50966 4.53394 4.59791 4.63983 4.64491 4.72074 4.77375 4.85159 4.88540 4.91831 4.93932 5.05938 5.09661 5.11429 5.15514 5.18953 5.28335 5.31961 5.48301 5.52017 5.74167 6.00003 6.17123 6.34720 6.55985 6.68494 7.16344 7.32794 8.82220 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.002836 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.407968 B = 9869.395478 C =10094.029042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.125 0.875 4 O -0.342 6.342 5 C 0.512 3.488 6 O -0.489 6.489 7 C -0.083 4.083 8 C 0.260 3.740 9 N -0.447 5.447 10 C -0.067 4.067 11 C -0.062 4.062 12 C -0.101 4.101 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.099 4.099 16 C 0.495 3.505 17 O -0.579 6.579 18 N -0.601 5.601 19 C 0.064 3.936 20 C 0.260 3.740 21 C -0.541 4.541 22 H 0.058 0.942 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.971 3.029 26 H -0.263 1.263 27 H -0.268 1.268 28 H -0.284 1.284 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.032 0.968 46 H -0.007 1.007 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 9.430 26.668 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.143 0.857 4 O -0.257 6.257 5 C 0.353 3.647 6 O -0.376 6.376 7 C -0.088 4.088 8 C -0.057 4.057 9 N -0.123 5.123 10 C -0.104 4.104 11 C -0.064 4.064 12 C -0.138 4.138 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.136 4.136 16 C 0.282 3.718 17 O -0.459 6.459 18 N -0.333 5.333 19 C -0.078 4.078 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.076 0.924 23 C -0.194 4.194 24 N -0.570 5.570 25 Si 0.795 3.205 26 H -0.187 1.187 27 H -0.193 1.193 28 H -0.210 1.210 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.050 0.950 46 H 0.012 0.988 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.259 8.289 26.329 29.115 hybrid contribution 0.036 -0.696 -1.597 1.743 sum -9.223 7.592 24.732 27.466 Atomic orbital electron populations 1.22255 0.88948 1.04584 1.05957 1.22696 0.98166 0.96800 0.80146 0.85714 1.86659 1.76539 1.42416 1.20108 1.22002 0.74021 0.84977 0.83726 1.90652 1.48116 1.15252 1.83578 1.18113 0.91446 1.08560 0.90687 1.27338 0.92718 0.92514 0.93135 1.81308 1.12737 1.10560 1.07663 1.23823 1.01183 0.97235 0.88194 1.22454 0.92669 0.97750 0.93512 1.22114 0.99992 0.93112 0.98602 1.22465 0.92042 1.02081 0.98397 1.22376 0.99758 0.96051 0.97944 1.21903 0.89643 1.01009 1.01084 1.20763 0.79134 0.86612 0.85263 1.90684 1.49451 1.19493 1.86226 1.48093 1.58266 1.18180 1.08741 1.22230 0.99591 0.81164 1.04796 1.18840 0.93114 0.92293 0.81890 1.21705 0.95997 1.30740 1.09488 0.92372 1.25907 0.97995 0.97329 0.98130 1.70068 1.19869 1.43226 1.23829 0.85319 0.78886 0.77868 0.78448 1.18733 1.19272 1.21021 0.88183 0.91469 0.87652 0.83704 0.83422 0.92692 0.89195 0.88802 0.90755 0.89163 0.92680 0.87527 0.92543 0.90944 0.90297 0.88199 0.95035 0.98848 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.16 71.98 0.66 -3.09 16 2 C 0.08 2.51 2.14 29.85 0.06 2.57 16 3 H 0.13 3.38 6.42 -2.39 -0.02 3.37 16 4 O -0.34 -11.31 9.48 -45.21 -0.43 -11.74 16 5 C 0.51 13.30 5.96 71.24 0.42 13.73 16 6 O -0.49 -12.33 15.71 21.97 0.35 -11.99 16 7 C -0.08 -1.72 2.49 -54.85 -0.14 -1.85 16 8 C 0.26 7.16 14.32 89.44 1.28 8.44 16 9 N -0.45 -14.81 18.54 20.01 0.37 -14.44 16 10 C -0.07 -0.68 9.42 30.48 0.29 -0.39 16 11 C -0.06 -0.84 2.43 -52.01 -0.13 -0.97 16 12 C -0.10 -1.28 5.80 31.57 0.18 -1.10 16 13 C -0.11 -0.98 6.91 31.93 0.22 -0.76 16 14 C -0.12 -1.29 6.84 31.72 0.22 -1.08 16 15 C -0.10 -1.18 6.19 31.23 0.19 -0.99 16 16 C 0.50 21.89 6.94 87.66 0.61 22.50 16 17 O -0.58 -32.44 16.24 14.98 0.24 -32.20 16 18 N -0.60 -26.02 2.86 -851.15 -2.43 -28.45 16 19 C 0.06 1.86 9.87 127.77 1.26 3.12 16 20 C 0.26 14.28 5.14 85.64 0.44 14.72 16 21 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 22 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 23 C 0.01 0.30 5.46 84.65 0.46 0.77 16 24 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 25 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 29 H 0.10 2.11 6.09 -2.38 -0.01 2.10 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.15 1.03 7.85 -2.38 -0.02 1.02 16 34 H 0.05 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 0.91 7.25 -2.39 -0.02 0.89 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 44 H 0.10 2.17 4.53 -2.38 -0.01 2.16 16 45 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 46 H -0.01 -0.43 7.50 -2.39 -0.02 -0.44 16 47 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -84.14 396.83 7.67 -76.47 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.98 Total: 7.42 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 6.28 Total: 24.50 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -1.78 Total: -99.65 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: 0.16 Total: -55.93 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -84.14 7.67 -76.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837906984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.234 kcal (2) G-P(sol) polarization free energy of solvation -84.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds