Wall clock time and date at job start Tue Mar 31 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45196 * 109.46664 * 240.00535 * 2 1 3 5 5 C 1.34893 * 117.00151 * 90.00080 * 4 2 1 6 6 O 1.21623 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.46498 * 119.99813 * 180.26947 * 5 4 2 8 8 C 1.38177 * 126.22970 * 179.41179 * 7 5 4 9 9 C 1.39202 * 106.85204 * 179.84515 * 8 7 5 10 10 C 1.36007 * 108.03556 * 0.46030 * 9 8 7 11 11 N 1.34562 * 108.85349 * 359.67551 * 10 9 8 12 12 H 0.96998 * 125.63711 * 180.09392 * 11 10 9 13 13 C 1.51037 * 123.81918 * 179.58188 * 10 9 8 14 14 C 1.53313 * 108.42144 * 343.33362 * 13 10 9 15 15 C 1.53106 * 109.53930 * 50.17389 * 14 13 10 16 16 C 1.50838 * 127.69497 * 180.23822 * 9 8 7 17 17 C 1.50699 * 109.47384 * 120.00191 * 2 1 3 18 18 O 1.21279 * 119.99556 * 119.99752 * 17 2 1 19 19 N 1.34773 * 120.00018 * 300.00114 * 17 2 1 20 20 C 1.46500 * 120.00259 * 359.97438 * 19 17 2 21 21 C 1.46499 * 119.99994 * 179.97438 * 19 17 2 22 22 C 1.50700 * 109.46860 * 90.00293 * 21 19 17 23 23 H 1.08004 * 120.00164 * 359.97438 * 22 21 19 24 24 C 1.37880 * 120.00039 * 180.02562 * 22 21 19 25 25 N 1.31522 * 119.99856 * 179.97438 * 24 22 21 26 26 Si 1.86789 * 119.99837 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47242 * 90.00459 * 26 24 22 28 28 H 1.48506 * 109.47055 * 210.00202 * 26 24 22 29 29 H 1.48495 * 109.47471 * 329.99934 * 26 24 22 30 30 H 1.09005 * 109.47391 * 299.99812 * 1 2 3 31 31 H 1.09006 * 109.47631 * 59.99563 * 1 2 3 32 32 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 33 33 H 1.07995 * 126.57055 * 0.02562 * 8 7 5 34 34 H 1.09000 * 109.67876 * 103.05927 * 13 10 9 35 35 H 1.09004 * 109.67573 * 223.59480 * 13 10 9 36 36 H 1.09002 * 109.45641 * 290.15780 * 14 13 10 37 37 H 1.09000 * 109.44954 * 170.19509 * 14 13 10 38 38 H 1.09001 * 109.47602 * 169.59370 * 15 14 13 39 39 H 1.09004 * 109.47270 * 49.58390 * 15 14 13 40 40 H 1.09005 * 109.68097 * 283.50426 * 16 9 8 41 41 H 1.09000 * 109.68352 * 44.05574 * 16 9 8 42 42 H 1.09004 * 109.47162 * 89.99502 * 20 19 17 43 43 H 1.08996 * 109.47447 * 209.99926 * 20 19 17 44 44 H 1.08999 * 109.46869 * 330.00123 * 20 19 17 45 45 H 1.08995 * 109.47557 * 209.99728 * 21 19 17 46 46 H 1.08995 * 109.47419 * 330.00473 * 21 19 17 47 47 H 0.96994 * 119.99649 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2180 0.0679 -2.2866 6 8 1.9968 1.2634 -2.2557 7 6 2.6999 -0.5563 -3.5212 8 6 2.9408 0.0857 -4.7208 9 6 3.3877 -0.8834 -5.6145 10 6 3.4032 -2.0790 -4.9663 11 7 2.9898 -1.8921 -3.6994 12 1 2.9096 -2.5830 -3.0234 13 6 3.8232 -3.3790 -5.6102 14 6 3.8040 -3.1942 -7.1321 15 6 4.5810 -1.9285 -7.5040 16 6 3.7898 -0.6935 -7.0559 17 6 2.0324 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1190 19 7 1.7068 -0.2500 2.4545 20 6 0.8650 0.9414 2.5891 21 6 2.1948 -0.9410 3.6506 22 6 3.5224 -0.3580 4.0610 23 1 3.9593 0.4465 3.4879 24 6 4.1800 -0.8522 5.1675 25 7 5.3389 -0.3437 5.5254 26 14 3.4248 -2.2440 6.1583 27 1 3.8841 -3.5464 5.6122 28 1 3.8457 -2.1264 7.5776 29 1 1.9444 -2.1659 6.0730 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.8105 1.1381 -4.9248 34 1 4.8300 -3.6413 -5.2852 35 1 3.1282 -4.1698 -5.3277 36 1 2.7731 -3.1010 -7.4736 37 1 4.2676 -4.0581 -7.6084 38 1 4.7259 -1.8951 -8.5838 39 1 5.5512 -1.9385 -7.0073 40 1 2.8988 -0.5841 -7.6742 41 1 4.4133 0.1957 -7.1490 42 1 -0.1831 0.6438 2.6222 43 1 1.1228 1.4665 3.5087 44 1 1.0288 1.6002 1.7363 45 1 1.4768 -0.8155 4.4611 46 1 2.3156 -2.0022 3.4334 47 1 5.8013 -0.6912 6.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838364924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:44 Heat of formation + Delta-G solvation = -80.585115 kcal Electronic energy + Delta-G solvation = -28616.077465 eV Core-core repulsion = 24571.555209 eV Total energy + Delta-G solvation = -4044.522256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87380 -40.39353 -38.96895 -36.67591 -36.32178 -35.11066 -32.89335 -32.48375 -31.74174 -29.62388 -29.05585 -28.28008 -26.42488 -25.22295 -24.06905 -22.83095 -22.13841 -21.54692 -20.30235 -18.99325 -18.90461 -18.49555 -17.02305 -16.92004 -16.53414 -16.12884 -15.79928 -15.30858 -15.13646 -14.81320 -14.35451 -14.13290 -13.93758 -13.82929 -13.62218 -13.49383 -13.39107 -13.00343 -12.81952 -12.65802 -12.48054 -12.37914 -12.29914 -12.10114 -11.84676 -11.60526 -11.32063 -11.19315 -11.06965 -11.00653 -10.83593 -10.74833 -10.71399 -10.56792 -10.19733 -9.59267 -9.07621 -9.03654 -8.63234 -8.21914 -7.84259 -6.12606 -4.12315 1.12194 2.37006 2.39598 2.89660 3.04330 3.14583 3.25818 3.31719 3.33314 3.76308 4.33855 4.35400 4.49624 4.54853 4.66300 4.73752 4.81888 4.91644 4.98123 5.04458 5.17894 5.19825 5.20362 5.24006 5.28502 5.42892 5.51152 5.55244 5.60316 5.62094 5.66111 5.73034 5.79003 5.90530 5.94843 5.99796 6.01559 6.14213 6.33036 6.57567 6.60526 6.72709 6.84687 7.18977 7.20501 7.54361 7.71476 8.05971 8.40785 8.76844 8.90945 9.46462 11.00710 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002445 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.485022 B =11449.701522 C =12269.486130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 H 0.110 0.890 4 O -0.332 6.332 5 C 0.536 3.464 6 O -0.502 6.502 7 C -0.043 4.043 8 C -0.086 4.086 9 C -0.182 4.182 10 C 0.064 3.936 11 N -0.513 5.513 12 H 0.426 0.574 13 C -0.057 4.057 14 C -0.112 4.112 15 C -0.121 4.121 16 C -0.045 4.045 17 C 0.512 3.488 18 O -0.521 6.521 19 N -0.590 5.590 20 C 0.075 3.925 21 C 0.217 3.783 22 C -0.532 4.532 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.895 5.895 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.266 1.266 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 -2.617 -24.472 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 H 0.128 0.872 4 O -0.248 6.248 5 C 0.382 3.618 6 O -0.391 6.391 7 C -0.153 4.153 8 C -0.112 4.112 9 C -0.188 4.188 10 C -0.057 4.057 11 N -0.107 5.107 12 H 0.265 0.735 13 C -0.095 4.095 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.083 4.083 17 C 0.297 3.703 18 O -0.397 6.397 19 N -0.324 5.324 20 C -0.069 4.069 21 C 0.097 3.903 22 C -0.571 4.571 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.704 3.296 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.369 -2.893 -24.141 25.713 hybrid contribution -0.295 -0.720 1.232 1.457 sum -8.664 -3.614 -22.909 24.757 Atomic orbital electron populations 1.22415 0.92315 1.04017 1.04529 1.22565 0.95656 0.97816 0.82365 0.87237 1.86644 1.77230 1.41271 1.19644 1.19838 0.74461 0.85003 0.82524 1.90877 1.49236 1.15025 1.83918 1.19253 1.17922 0.84033 0.94121 1.21013 1.00743 0.99554 0.89899 1.19252 1.10542 0.91863 0.97127 1.20482 1.03242 0.97534 0.84444 1.41666 1.49330 1.08541 1.11196 0.73524 1.20381 1.01977 0.91698 0.95451 1.21518 1.01401 0.98348 0.93749 1.21611 0.99140 0.94212 1.00885 1.20044 0.99498 0.98110 0.90612 1.19780 0.81403 0.85314 0.83825 1.90690 1.36845 1.26224 1.85924 1.47716 1.50083 1.28496 1.06072 1.21931 0.93694 0.87802 1.03464 1.19722 0.95528 0.93683 0.81340 1.21316 1.03079 1.20491 1.12196 0.90715 1.24865 0.94629 0.96488 0.97027 1.69899 1.14712 1.42240 1.26513 0.86835 0.80006 0.83194 0.79553 1.19887 1.20978 1.19030 0.88778 0.91105 0.91130 0.83128 0.89820 0.90366 0.91341 0.91046 0.91461 0.91567 0.91203 0.90954 0.92857 0.90020 0.91864 0.94777 0.94412 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.19 37.16 0.34 -1.89 16 2 C 0.07 1.25 2.19 -27.88 -0.06 1.19 16 3 H 0.11 1.81 6.42 -51.93 -0.33 1.48 16 4 O -0.33 -5.70 9.43 -47.71 -0.45 -6.15 16 5 C 0.54 8.65 7.91 34.06 0.27 8.92 16 6 O -0.50 -8.75 16.15 -19.36 -0.31 -9.06 16 7 C -0.04 -0.59 7.10 -81.86 -0.58 -1.17 16 8 C -0.09 -1.06 10.63 -39.25 -0.42 -1.48 16 9 C -0.18 -1.90 5.91 -105.00 -0.62 -2.52 16 10 C 0.06 0.64 7.01 -82.03 -0.57 0.07 16 11 N -0.51 -5.99 6.06 -5.61 -0.03 -6.02 16 12 H 0.43 4.51 8.96 -40.82 -0.37 4.15 16 13 C -0.06 -0.40 6.30 -27.56 -0.17 -0.57 16 14 C -0.11 -0.64 5.89 -26.51 -0.16 -0.79 16 15 C -0.12 -0.74 5.90 -26.49 -0.16 -0.90 16 16 C -0.05 -0.34 6.27 -27.63 -0.17 -0.51 16 17 C 0.51 10.80 7.15 -10.99 -0.08 10.72 16 18 O -0.52 -13.19 16.08 -14.10 -0.23 -13.41 16 19 N -0.59 -12.13 2.86 -182.96 -0.52 -12.66 16 20 C 0.07 1.12 8.80 59.85 0.53 1.64 16 21 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 22 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 23 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 24 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 26 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 27 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 30 H 0.09 1.03 4.53 -51.93 -0.24 0.80 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 43 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16 45 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 46 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -36.28 383.36 -8.97 -45.25 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.99 Total: 2.13 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.32 Total: 4.30 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.22 Total: -45.57 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.99 Total: -28.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.28 -8.97 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838364924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.336 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds