Wall clock time and date at job start Tue Mar 31 2020 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 O 1.45196 * 109.46664 * 240.00535 * 2 1 3 5 5 C 1.34893 * 117.00151 * 90.00080 * 4 2 1 6 6 O 1.21623 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.46498 * 119.99813 * 180.26947 * 5 4 2 8 8 C 1.38177 * 126.22970 * 179.41179 * 7 5 4 9 9 C 1.39202 * 106.85204 * 179.84515 * 8 7 5 10 10 C 1.36007 * 108.03556 * 0.46030 * 9 8 7 11 11 N 1.34562 * 108.85349 * 359.67551 * 10 9 8 12 12 H 0.96998 * 125.63711 * 180.09392 * 11 10 9 13 13 C 1.51037 * 123.81918 * 179.58188 * 10 9 8 14 14 C 1.53313 * 108.42144 * 343.33362 * 13 10 9 15 15 C 1.53106 * 109.53930 * 50.17389 * 14 13 10 16 16 C 1.50838 * 127.69497 * 180.23822 * 9 8 7 17 17 C 1.50699 * 109.47384 * 120.00191 * 2 1 3 18 18 O 1.21279 * 119.99556 * 119.99752 * 17 2 1 19 19 N 1.34773 * 120.00018 * 300.00114 * 17 2 1 20 20 C 1.46500 * 120.00259 * 359.97438 * 19 17 2 21 21 C 1.46499 * 119.99994 * 179.97438 * 19 17 2 22 22 C 1.50700 * 109.46860 * 90.00293 * 21 19 17 23 23 H 1.08004 * 120.00164 * 359.97438 * 22 21 19 24 24 C 1.37880 * 120.00039 * 180.02562 * 22 21 19 25 25 N 1.31522 * 119.99856 * 179.97438 * 24 22 21 26 26 Si 1.86789 * 119.99837 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47242 * 90.00459 * 26 24 22 28 28 H 1.48506 * 109.47055 * 210.00202 * 26 24 22 29 29 H 1.48495 * 109.47471 * 329.99934 * 26 24 22 30 30 H 1.09005 * 109.47391 * 299.99812 * 1 2 3 31 31 H 1.09006 * 109.47631 * 59.99563 * 1 2 3 32 32 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 33 33 H 1.07995 * 126.57055 * 0.02562 * 8 7 5 34 34 H 1.09000 * 109.67876 * 103.05927 * 13 10 9 35 35 H 1.09004 * 109.67573 * 223.59480 * 13 10 9 36 36 H 1.09002 * 109.45641 * 290.15780 * 14 13 10 37 37 H 1.09000 * 109.44954 * 170.19509 * 14 13 10 38 38 H 1.09001 * 109.47602 * 169.59370 * 15 14 13 39 39 H 1.09004 * 109.47270 * 49.58390 * 15 14 13 40 40 H 1.09005 * 109.68097 * 283.50426 * 16 9 8 41 41 H 1.09000 * 109.68352 * 44.05574 * 16 9 8 42 42 H 1.09004 * 109.47162 * 89.99502 * 20 19 17 43 43 H 1.08996 * 109.47447 * 209.99926 * 20 19 17 44 44 H 1.08999 * 109.46869 * 330.00123 * 20 19 17 45 45 H 1.08995 * 109.47557 * 209.99728 * 21 19 17 46 46 H 1.08995 * 109.47419 * 330.00473 * 21 19 17 47 47 H 0.96994 * 119.99649 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2180 0.0679 -2.2866 6 8 1.9968 1.2634 -2.2557 7 6 2.6999 -0.5563 -3.5212 8 6 2.9408 0.0857 -4.7208 9 6 3.3877 -0.8834 -5.6145 10 6 3.4032 -2.0790 -4.9663 11 7 2.9898 -1.8921 -3.6994 12 1 2.9096 -2.5830 -3.0234 13 6 3.8232 -3.3790 -5.6102 14 6 3.8040 -3.1942 -7.1321 15 6 4.5810 -1.9285 -7.5040 16 6 3.7898 -0.6935 -7.0559 17 6 2.0324 -0.7104 1.2304 18 8 2.7296 -1.6965 1.1190 19 7 1.7068 -0.2500 2.4545 20 6 0.8650 0.9414 2.5891 21 6 2.1948 -0.9410 3.6506 22 6 3.5224 -0.3580 4.0610 23 1 3.9593 0.4465 3.4879 24 6 4.1800 -0.8522 5.1675 25 7 5.3389 -0.3437 5.5254 26 14 3.4248 -2.2440 6.1583 27 1 3.8841 -3.5464 5.6122 28 1 3.8457 -2.1264 7.5776 29 1 1.9444 -2.1659 6.0730 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.8105 1.1381 -4.9248 34 1 4.8300 -3.6413 -5.2852 35 1 3.1282 -4.1698 -5.3277 36 1 2.7731 -3.1010 -7.4736 37 1 4.2676 -4.0581 -7.6084 38 1 4.7259 -1.8951 -8.5838 39 1 5.5512 -1.9385 -7.0073 40 1 2.8988 -0.5841 -7.6742 41 1 4.4133 0.1957 -7.1490 42 1 -0.1831 0.6438 2.6222 43 1 1.1228 1.4665 3.5087 44 1 1.0288 1.6002 1.7363 45 1 1.4768 -0.8155 4.4611 46 1 2.3156 -2.0022 3.4334 47 1 5.8013 -0.6912 6.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838364924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:43 Heat of formation + Delta-G solvation = -103.453500 kcal Electronic energy + Delta-G solvation = -28617.069112 eV Core-core repulsion = 24571.555209 eV Total energy + Delta-G solvation = -4045.513903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.78846 -41.71132 -40.49022 -37.71775 -37.21561 -36.82911 -34.91238 -33.27431 -33.21988 -30.49959 -30.09971 -29.77942 -27.83891 -26.27899 -25.44161 -24.01782 -23.27492 -22.42466 -21.38148 -20.52680 -19.84409 -19.42608 -19.18550 -18.26285 -17.86217 -17.39093 -17.18057 -16.62261 -16.43917 -16.01488 -15.64518 -15.12404 -15.05190 -14.82255 -14.69705 -14.50849 -14.50220 -14.34191 -14.00071 -13.79764 -13.71655 -13.59777 -13.52087 -13.32090 -13.10844 -12.87580 -12.69860 -12.61432 -12.40042 -12.06741 -12.02423 -11.94789 -11.78209 -11.66766 -11.57463 -11.36393 -10.86705 -10.75314 -9.94196 -9.55510 -9.09173 -8.37304 -6.43973 0.05209 1.12034 1.32075 1.36073 1.44752 1.48463 1.52234 1.97574 1.98640 2.28555 2.30220 2.96819 3.29678 3.54294 3.69642 3.75114 3.78293 3.92112 4.06795 4.12167 4.25169 4.33568 4.41841 4.50749 4.56729 4.57976 4.63417 4.67012 4.71639 4.74497 4.82249 4.87040 4.92675 5.03232 5.05502 5.12366 5.13556 5.22036 5.30777 5.35151 5.39657 5.46886 5.53997 5.74726 5.84169 6.16881 6.34372 6.41544 6.53543 6.57665 7.08300 7.23054 8.79879 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002445 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.485022 B =11449.701522 C =12269.486130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.110 0.890 4 O -0.346 6.346 5 C 0.535 3.465 6 O -0.525 6.525 7 C -0.080 4.080 8 C -0.087 4.087 9 C -0.192 4.192 10 C 0.075 3.925 11 N -0.515 5.515 12 H 0.428 0.572 13 C -0.059 4.059 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.046 4.046 17 C 0.503 3.497 18 O -0.576 6.576 19 N -0.595 5.595 20 C 0.065 3.935 21 C 0.224 3.776 22 C -0.542 4.542 23 H 0.024 0.976 24 C 0.009 3.991 25 N -0.946 5.946 26 Si 0.952 3.048 27 H -0.276 1.276 28 H -0.275 1.275 29 H -0.232 1.232 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.023 0.977 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 -3.852 -25.792 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.128 0.872 4 O -0.262 6.262 5 C 0.383 3.617 6 O -0.415 6.415 7 C -0.190 4.190 8 C -0.114 4.114 9 C -0.197 4.197 10 C -0.046 4.046 11 N -0.110 5.110 12 H 0.267 0.733 13 C -0.097 4.097 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.083 4.083 17 C 0.290 3.710 18 O -0.456 6.456 19 N -0.327 5.327 20 C -0.077 4.077 21 C 0.103 3.897 22 C -0.580 4.580 23 H 0.043 0.957 24 C -0.189 4.189 25 N -0.586 5.586 26 Si 0.774 3.226 27 H -0.202 1.202 28 H -0.200 1.200 29 H -0.155 1.155 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.578 -4.081 -25.471 27.880 hybrid contribution 0.484 -0.279 1.517 1.617 sum -10.094 -4.360 -23.954 26.357 Atomic orbital electron populations 1.22418 0.88699 1.04782 1.06280 1.22552 0.98202 0.96568 0.80551 0.87240 1.86641 1.77666 1.41873 1.20016 1.20181 0.74029 0.84868 0.82663 1.90841 1.50667 1.15714 1.84266 1.19187 1.20760 0.85302 0.93779 1.21272 1.00065 1.00194 0.89838 1.19671 1.10159 0.91403 0.98461 1.21176 1.00903 0.98992 0.83578 1.41740 1.49398 1.07888 1.11952 0.73292 1.20595 1.02612 0.90240 0.96262 1.21546 1.01693 0.98928 0.92576 1.21627 0.98525 0.93584 1.01998 1.20152 1.00242 0.99169 0.88749 1.20573 0.80448 0.84829 0.85154 1.90647 1.39279 1.28796 1.86874 1.47795 1.50222 1.29674 1.04987 1.22314 0.95024 0.86148 1.04190 1.19448 0.93918 0.92852 0.83523 1.21548 1.05250 1.19433 1.11816 0.95718 1.25919 0.95014 0.99541 0.98410 1.70062 1.16649 1.44320 1.27530 0.85659 0.80929 0.78409 0.77612 1.20208 1.19973 1.15502 0.86508 0.89749 0.90854 0.82760 0.89035 0.88952 0.91178 0.89017 0.89577 0.92157 0.90163 0.90699 0.88457 0.90543 0.89885 0.91946 0.95929 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.19 71.98 0.66 -3.21 16 2 C 0.08 2.66 2.19 29.85 0.07 2.73 16 3 H 0.11 3.65 6.42 -2.39 -0.02 3.64 16 4 O -0.35 -12.21 9.43 -51.68 -0.49 -12.70 16 5 C 0.53 17.80 7.91 69.97 0.55 18.35 16 6 O -0.52 -18.72 16.15 19.43 0.31 -18.40 16 7 C -0.08 -2.29 7.10 40.34 0.29 -2.00 16 8 C -0.09 -2.16 10.63 22.49 0.24 -1.92 16 9 C -0.19 -3.84 5.91 -20.11 -0.12 -3.95 16 10 C 0.08 1.44 7.01 41.73 0.29 1.73 16 11 N -0.52 -12.12 6.06 -171.65 -1.04 -13.16 16 12 H 0.43 9.32 8.96 -92.71 -0.83 8.49 16 13 C -0.06 -0.69 6.30 30.06 0.19 -0.50 16 14 C -0.11 -0.93 5.89 30.73 0.18 -0.75 16 15 C -0.12 -1.16 5.90 30.75 0.18 -0.98 16 16 C -0.05 -0.61 6.27 30.01 0.19 -0.42 16 17 C 0.50 21.55 7.15 87.66 0.63 22.18 16 18 O -0.58 -30.31 16.08 15.77 0.25 -30.06 16 19 N -0.59 -24.22 2.86 -851.16 -2.43 -26.65 16 20 C 0.06 1.80 8.80 127.77 1.12 2.92 16 21 C 0.22 10.82 4.23 85.63 0.36 11.18 16 22 C -0.54 -32.16 9.94 25.60 0.25 -31.91 16 23 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 24 C 0.01 0.55 5.47 84.65 0.46 1.01 16 25 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 26 Si 0.95 44.04 27.47 68.60 1.88 45.92 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 29 H -0.23 -9.42 6.54 99.48 0.65 -8.77 16 30 H 0.12 2.15 4.53 -2.38 -0.01 2.14 16 31 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.67 8.11 -2.39 -0.02 0.65 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.90 6.95 -2.38 -0.02 1.89 16 43 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 44 H 0.08 1.99 6.01 -2.39 -0.01 1.97 16 45 H 0.06 2.67 7.13 -2.39 -0.02 2.65 16 46 H 0.02 1.16 6.85 -2.39 -0.02 1.15 16 47 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -83.80 383.36 4.45 -79.35 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.11 Total: 21.29 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.55 Total: 14.46 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.17 Total: -99.85 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: 0.08 Total: -61.16 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -83.80 4.45 -79.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838364924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.105 kcal (2) G-P(sol) polarization free energy of solvation -83.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds