Wall clock time and date at job start Tue Mar 31 2020 18:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.47100 * 2 1 4 4 C 1.34845 * 125.20435 * 276.79742 * 3 2 1 5 5 O 1.21282 * 125.75218 * 359.62109 * 4 3 2 6 6 C 1.51313 * 108.50400 * 179.61907 * 4 3 2 7 7 C 1.52996 * 110.38106 * 224.42054 * 6 4 3 8 8 C 1.52999 * 110.47412 * 102.10597 * 6 4 3 9 9 N 1.48237 * 104.75974 * 343.23953 * 6 4 3 10 10 C 1.46804 * 125.20281 * 96.85408 * 3 2 1 11 11 H 1.09000 * 110.17192 * 316.74402 * 10 3 2 12 12 C 1.50697 * 110.11990 * 78.38379 * 10 3 2 13 13 C 1.38318 * 119.90582 * 334.11343 * 12 10 3 14 14 C 1.38160 * 120.17216 * 180.28359 * 13 12 10 15 15 C 1.38765 * 119.98162 * 359.48806 * 14 13 12 16 16 O 1.35797 * 120.09007 * 180.25963 * 15 14 13 17 17 C 1.34804 * 117.00098 * 6.01437 * 16 15 14 18 18 H 1.08001 * 120.00057 * 354.84388 * 17 16 15 19 19 C 1.38642 * 119.99970 * 174.84908 * 17 16 15 20 20 N 1.31576 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00226 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47294 * 89.99205 * 21 19 17 23 23 H 1.48496 * 109.47191 * 209.99642 * 21 19 17 24 24 H 1.48499 * 109.46747 * 329.99687 * 21 19 17 25 25 C 1.39334 * 119.81447 * 0.50729 * 15 14 13 26 26 O 1.35954 * 120.08549 * 179.76708 * 25 15 14 27 27 C 1.42899 * 116.99988 * 179.97438 * 26 25 15 28 28 C 1.38231 * 119.90877 * 154.14146 * 12 10 3 29 29 H 1.08999 * 109.46955 * 300.00442 * 1 2 3 30 30 H 1.09003 * 109.46604 * 59.99856 * 1 2 3 31 31 H 1.08993 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47420 * 240.00138 * 2 1 3 33 33 H 1.08997 * 109.47241 * 119.99879 * 2 1 3 34 34 H 1.09000 * 109.46876 * 175.34660 * 7 6 4 35 35 H 1.09005 * 109.46981 * 295.33879 * 7 6 4 36 36 H 1.09001 * 109.47333 * 55.33726 * 7 6 4 37 37 H 1.09000 * 109.47146 * 304.60160 * 8 6 4 38 38 H 1.08997 * 109.47045 * 64.60452 * 8 6 4 39 39 H 1.08998 * 109.47162 * 184.60463 * 8 6 4 40 40 H 1.00907 * 110.99851 * 145.29301 * 9 6 4 41 41 H 1.08007 * 119.91822 * 0.02562 * 13 12 10 42 42 H 1.07994 * 120.01484 * 179.72133 * 14 13 12 43 43 H 0.96996 * 120.00189 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.47487 * 300.00128 * 27 26 25 45 45 H 1.08999 * 109.46739 * 60.00738 * 27 26 25 46 46 H 1.09001 * 109.46939 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.99607 * 359.94525 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1545 2.1577 -1.0941 5 8 1.9008 1.8277 -2.2332 6 6 2.6772 3.5101 -0.6612 7 6 1.9099 4.6291 -1.3683 8 6 4.1745 3.6241 -0.9546 9 7 2.4323 3.5596 0.8000 10 6 2.4354 2.1315 1.1910 11 1 1.7313 1.9644 2.0061 12 6 3.8210 1.7116 1.6092 13 6 4.2870 0.4505 1.2843 14 6 5.5541 0.0577 1.6700 15 6 6.3667 0.9334 2.3761 16 8 7.6146 0.5516 2.7517 17 6 8.0508 -0.6419 2.3017 18 1 7.3865 -1.2837 1.7420 19 6 9.3522 -1.0457 2.5576 20 7 10.1617 -0.2637 3.2391 21 14 9.9566 -2.6998 1.9347 22 1 10.5377 -2.5357 0.5781 23 1 10.9939 -3.2271 2.8572 24 1 8.8183 -3.6516 1.8737 25 6 5.8967 2.2037 2.7030 26 8 6.6864 3.0644 3.3987 27 6 6.1386 4.3499 3.6979 28 6 4.6225 2.5877 2.3169 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2407 5.5945 -0.9853 35 1 2.1003 4.5790 -2.4404 36 1 0.8423 4.5110 -1.1829 37 1 4.7021 2.7981 -0.4778 38 1 4.3376 3.5861 -2.0316 39 1 4.5504 4.5695 -0.5634 40 1 3.1663 4.0656 1.2727 41 1 3.6570 -0.2306 0.7312 42 1 5.9137 -0.9291 1.4189 43 1 11.0723 -0.5459 3.4178 44 1 5.8913 4.8646 2.7695 45 1 5.2367 4.2296 4.2981 46 1 6.8702 4.9360 4.2542 47 1 4.2557 3.5719 2.5686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840833553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:50 Heat of formation + Delta-G solvation = -43.640304 kcal Electronic energy + Delta-G solvation = -30330.578885 eV Core-core repulsion = 26287.658676 eV Total energy + Delta-G solvation = -4042.920209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30263 -39.59455 -37.64129 -37.32576 -35.86941 -35.35353 -32.48647 -31.89535 -30.29849 -29.48496 -28.85235 -27.35786 -26.98017 -25.64688 -24.54256 -24.18131 -21.92741 -21.31643 -20.78201 -19.22796 -18.12741 -17.79944 -16.91943 -16.42215 -15.95929 -15.56946 -15.32661 -15.22805 -14.88005 -14.64813 -14.44219 -14.00797 -13.87709 -13.78681 -13.63843 -13.54468 -13.37560 -13.27210 -12.62258 -12.48182 -12.34718 -12.18776 -12.05553 -11.97304 -11.75547 -11.69208 -11.52511 -11.37187 -11.30346 -11.01237 -10.97657 -10.81945 -10.50225 -10.37749 -9.67108 -9.56498 -9.32598 -8.91917 -8.56647 -8.07209 -7.09418 -6.53410 -4.09885 1.89999 2.05567 2.56287 2.87888 3.07625 3.08882 3.13369 3.87279 3.87880 3.94600 4.14251 4.30508 4.75132 4.85421 4.89976 4.95854 4.97511 5.03881 5.10019 5.22709 5.36390 5.37155 5.44808 5.45825 5.53836 5.56304 5.60900 5.64838 5.69093 5.71814 5.73118 5.75474 6.02161 6.03895 6.04889 6.08876 6.19134 6.25416 6.40962 6.45496 6.69375 6.83714 7.00981 7.08099 7.13790 7.24364 7.44485 7.85381 8.02828 8.15047 8.90409 9.58738 10.63225 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003776 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.809188 B = 7413.163481 C = 8515.035176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.612 5.612 4 C 0.531 3.469 5 O -0.525 6.525 6 C 0.062 3.938 7 C -0.118 4.118 8 C -0.166 4.166 9 N -0.646 5.646 10 C 0.347 3.653 11 H 0.105 0.895 12 C -0.205 4.205 13 C -0.081 4.081 14 C -0.213 4.213 15 C 0.139 3.861 16 O -0.158 6.158 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.941 3.059 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.267 1.267 25 C 0.064 3.936 26 O -0.301 6.301 27 C 0.030 3.970 28 C -0.159 4.159 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.355 0.645 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.272 0.728 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 6.391 -3.115 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.346 5.346 4 C 0.318 3.682 5 O -0.400 6.400 6 C -0.032 4.032 7 C -0.176 4.176 8 C -0.224 4.224 9 N -0.279 5.279 10 C 0.153 3.847 11 H 0.123 0.877 12 C -0.209 4.209 13 C -0.100 4.100 14 C -0.233 4.233 15 C 0.083 3.917 16 O -0.060 6.060 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.486 5.486 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C 0.019 3.981 26 O -0.215 6.215 27 C -0.066 4.066 28 C -0.179 4.179 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.176 0.824 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.082 6.333 -3.407 16.709 hybrid contribution 1.121 -0.985 -0.202 1.505 sum -13.961 5.349 -3.609 15.380 Atomic orbital electron populations 1.22157 0.95660 1.02236 1.02533 1.21456 0.94273 0.80629 1.03497 1.48564 1.64334 1.13709 1.07992 1.20773 0.76182 0.86711 0.84551 1.90688 1.51601 1.77936 1.19823 1.21826 0.96567 0.94817 0.90004 1.21542 1.00027 0.96315 0.99699 1.22300 0.93155 1.03565 1.03424 1.64309 1.50764 1.09570 1.03289 1.20726 0.92833 0.83998 0.87176 0.87733 1.19744 0.96695 0.96560 1.07913 1.20593 0.95350 0.95066 0.99019 1.20915 0.95012 1.01100 1.06228 1.18717 0.87800 0.90327 0.94811 1.84062 1.23757 1.36340 1.61870 1.21377 0.97052 0.92661 1.35775 0.88976 1.25323 0.94768 0.99784 0.96531 1.70065 1.06647 1.36335 1.35529 0.85706 0.79017 0.79977 0.78729 1.19766 1.20134 1.19092 1.18093 0.90725 0.89175 1.00133 1.86264 1.40794 1.23953 1.70469 1.22916 0.99798 0.83996 0.99871 1.20300 0.93310 0.99796 1.04455 0.92249 0.92298 0.91412 0.90171 0.89327 0.91611 0.91506 0.91955 0.90745 0.91233 0.91167 0.82367 0.86986 0.84819 0.91843 0.93597 0.93424 0.88955 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.23 37.16 0.38 -1.25 16 2 C 0.12 1.40 5.22 -4.04 -0.02 1.37 16 3 N -0.61 -8.09 2.16 -169.67 -0.37 -8.46 16 4 C 0.53 7.98 6.92 -10.65 -0.07 7.91 16 5 O -0.53 -9.36 17.68 5.56 0.10 -9.26 16 6 C 0.06 0.78 1.14 -131.72 -0.15 0.63 16 7 C -0.12 -1.28 8.85 37.16 0.33 -0.95 16 8 C -0.17 -2.12 8.40 37.16 0.31 -1.81 16 9 N -0.65 -7.50 7.21 -96.51 -0.70 -8.19 16 10 C 0.35 4.39 4.07 -126.73 -0.52 3.88 16 11 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 12 C -0.21 -3.10 3.95 -104.60 -0.41 -3.51 16 13 C -0.08 -1.37 9.11 -39.58 -0.36 -1.73 16 14 C -0.21 -4.34 9.16 -39.42 -0.36 -4.70 16 15 C 0.14 3.23 6.66 -38.98 -0.26 2.97 16 16 O -0.16 -4.43 9.54 -14.45 -0.14 -4.57 16 17 C -0.39 -10.68 9.49 30.88 0.29 -10.39 16 18 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 20 N -0.85 -24.59 13.67 55.48 0.76 -23.83 16 21 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C 0.06 1.29 6.70 -39.05 -0.26 1.03 16 26 O -0.30 -6.09 10.28 -34.03 -0.35 -6.44 16 27 C 0.03 0.40 9.81 101.05 0.99 1.39 16 28 C -0.16 -2.49 7.85 -39.46 -0.31 -2.80 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.91 6.73 -51.93 -0.35 0.56 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.36 3.83 5.76 -39.29 -0.23 3.60 16 41 H 0.11 1.67 4.79 -52.48 -0.25 1.42 16 42 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 45 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.12 1.50 4.75 -52.49 -0.25 1.26 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -32.31 377.01 -7.11 -39.42 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.56 Total: 7.59 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.52 Total: -6.95 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.30 Total: -40.49 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.39 Total: -20.27 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.31 -7.11 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840833553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.219 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds