Wall clock time and date at job start Tue Mar 31 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.47100 * 2 1 4 4 C 1.34845 * 125.20435 * 276.79742 * 3 2 1 5 5 O 1.21282 * 125.75218 * 359.62109 * 4 3 2 6 6 C 1.51313 * 108.50400 * 179.61907 * 4 3 2 7 7 C 1.52996 * 110.38106 * 224.42054 * 6 4 3 8 8 C 1.52999 * 110.47412 * 102.10597 * 6 4 3 9 9 N 1.48237 * 104.75974 * 343.23953 * 6 4 3 10 10 C 1.46804 * 125.20281 * 96.85408 * 3 2 1 11 11 H 1.09000 * 110.17192 * 316.74402 * 10 3 2 12 12 C 1.50697 * 110.11990 * 78.38379 * 10 3 2 13 13 C 1.38318 * 119.90582 * 334.11343 * 12 10 3 14 14 C 1.38160 * 120.17216 * 180.28359 * 13 12 10 15 15 C 1.38765 * 119.98162 * 359.48806 * 14 13 12 16 16 O 1.35797 * 120.09007 * 180.25963 * 15 14 13 17 17 C 1.34804 * 117.00098 * 6.01437 * 16 15 14 18 18 H 1.08001 * 120.00057 * 354.84388 * 17 16 15 19 19 C 1.38642 * 119.99970 * 174.84908 * 17 16 15 20 20 N 1.31576 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00226 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47294 * 89.99205 * 21 19 17 23 23 H 1.48496 * 109.47191 * 209.99642 * 21 19 17 24 24 H 1.48499 * 109.46747 * 329.99687 * 21 19 17 25 25 C 1.39334 * 119.81447 * 0.50729 * 15 14 13 26 26 O 1.35954 * 120.08549 * 179.76708 * 25 15 14 27 27 C 1.42899 * 116.99988 * 179.97438 * 26 25 15 28 28 C 1.38231 * 119.90877 * 154.14146 * 12 10 3 29 29 H 1.08999 * 109.46955 * 300.00442 * 1 2 3 30 30 H 1.09003 * 109.46604 * 59.99856 * 1 2 3 31 31 H 1.08993 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47420 * 240.00138 * 2 1 3 33 33 H 1.08997 * 109.47241 * 119.99879 * 2 1 3 34 34 H 1.09000 * 109.46876 * 175.34660 * 7 6 4 35 35 H 1.09005 * 109.46981 * 295.33879 * 7 6 4 36 36 H 1.09001 * 109.47333 * 55.33726 * 7 6 4 37 37 H 1.09000 * 109.47146 * 304.60160 * 8 6 4 38 38 H 1.08997 * 109.47045 * 64.60452 * 8 6 4 39 39 H 1.08998 * 109.47162 * 184.60463 * 8 6 4 40 40 H 1.00907 * 110.99851 * 145.29301 * 9 6 4 41 41 H 1.08007 * 119.91822 * 0.02562 * 13 12 10 42 42 H 1.07994 * 120.01484 * 179.72133 * 14 13 12 43 43 H 0.96996 * 120.00189 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.47487 * 300.00128 * 27 26 25 45 45 H 1.08999 * 109.46739 * 60.00738 * 27 26 25 46 46 H 1.09001 * 109.46939 * 180.02562 * 27 26 25 47 47 H 1.08000 * 119.99607 * 359.94525 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1545 2.1577 -1.0941 5 8 1.9008 1.8277 -2.2332 6 6 2.6772 3.5101 -0.6612 7 6 1.9099 4.6291 -1.3683 8 6 4.1745 3.6241 -0.9546 9 7 2.4323 3.5596 0.8000 10 6 2.4354 2.1315 1.1910 11 1 1.7313 1.9644 2.0061 12 6 3.8210 1.7116 1.6092 13 6 4.2870 0.4505 1.2843 14 6 5.5541 0.0577 1.6700 15 6 6.3667 0.9334 2.3761 16 8 7.6146 0.5516 2.7517 17 6 8.0508 -0.6419 2.3017 18 1 7.3865 -1.2837 1.7420 19 6 9.3522 -1.0457 2.5576 20 7 10.1617 -0.2637 3.2391 21 14 9.9566 -2.6998 1.9347 22 1 10.5377 -2.5357 0.5781 23 1 10.9939 -3.2271 2.8572 24 1 8.8183 -3.6516 1.8737 25 6 5.8967 2.2037 2.7030 26 8 6.6864 3.0644 3.3987 27 6 6.1386 4.3499 3.6979 28 6 4.6225 2.5877 2.3169 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2407 5.5945 -0.9853 35 1 2.1003 4.5790 -2.4404 36 1 0.8423 4.5110 -1.1829 37 1 4.7021 2.7981 -0.4778 38 1 4.3376 3.5861 -2.0316 39 1 4.5504 4.5695 -0.5634 40 1 3.1663 4.0656 1.2727 41 1 3.6570 -0.2306 0.7312 42 1 5.9137 -0.9291 1.4189 43 1 11.0723 -0.5459 3.4178 44 1 5.8913 4.8646 2.7695 45 1 5.2367 4.2296 4.2981 46 1 6.8702 4.9360 4.2542 47 1 4.2557 3.5719 2.5686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840833553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:49 Heat of formation + Delta-G solvation = -66.257461 kcal Electronic energy + Delta-G solvation = -30331.559639 eV Core-core repulsion = 26287.658676 eV Total energy + Delta-G solvation = -4043.900962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46500 -41.08969 -39.26735 -38.63027 -37.18011 -36.46383 -34.33043 -33.04269 -31.46157 -30.90633 -30.11825 -28.31114 -28.17284 -27.44820 -25.72671 -25.27732 -23.36781 -22.64349 -21.98030 -20.39131 -19.82386 -19.34858 -18.04994 -17.88067 -17.24195 -16.86949 -16.69932 -16.52308 -16.29455 -15.91277 -15.71562 -15.33710 -15.22029 -15.17485 -15.01242 -14.75389 -14.49260 -14.35657 -13.98256 -13.65331 -13.48174 -13.37819 -13.25967 -13.08070 -13.00489 -12.88860 -12.74955 -12.68988 -12.52976 -12.33770 -12.19663 -12.05685 -12.00693 -11.69505 -11.36290 -10.83042 -10.77332 -10.38453 -9.66798 -9.54863 -8.71251 -8.46890 -6.12980 0.40906 0.54608 1.33789 1.40597 1.42357 1.50795 1.82974 2.15677 2.57258 2.71714 2.91420 3.08106 3.09944 3.37582 3.64181 3.79733 3.87901 4.00703 4.04787 4.13733 4.24116 4.33401 4.36923 4.47317 4.47760 4.54064 4.54903 4.64609 4.66594 4.73659 4.75587 4.78558 4.84754 4.88419 4.90263 5.05811 5.07675 5.14582 5.22810 5.27004 5.31218 5.40215 5.48378 5.61391 5.90414 5.97471 6.01992 6.12001 6.62773 6.96980 7.01391 7.78454 8.75684 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003776 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.809188 B = 7413.163481 C = 8515.035176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 N -0.611 5.611 4 C 0.519 3.481 5 O -0.560 6.560 6 C 0.064 3.936 7 C -0.113 4.113 8 C -0.163 4.163 9 N -0.629 5.629 10 C 0.348 3.652 11 H 0.134 0.866 12 C -0.169 4.169 13 C -0.089 4.089 14 C -0.210 4.210 15 C 0.089 3.911 16 O -0.219 6.219 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.021 4.021 20 N -0.916 5.916 21 Si 1.016 2.984 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.252 1.252 25 C 0.057 3.943 26 O -0.343 6.343 27 C 0.017 3.983 28 C -0.141 4.141 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.364 0.636 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.272 0.728 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.140 7.646 -3.413 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 N -0.344 5.344 4 C 0.307 3.693 5 O -0.438 6.438 6 C -0.030 4.030 7 C -0.172 4.172 8 C -0.222 4.222 9 N -0.263 5.263 10 C 0.153 3.847 11 H 0.152 0.848 12 C -0.172 4.172 13 C -0.107 4.107 14 C -0.230 4.230 15 C 0.038 3.962 16 O -0.125 6.125 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.175 1.175 25 C 0.011 3.989 26 O -0.258 6.258 27 C -0.077 4.077 28 C -0.161 4.161 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.186 0.814 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.509 7.615 -3.701 20.353 hybrid contribution 1.755 -1.130 -0.184 2.096 sum -16.753 6.485 -3.885 18.380 Atomic orbital electron populations 1.22073 0.94106 1.03426 1.02022 1.21662 0.95589 0.79716 1.03733 1.48713 1.63645 1.14328 1.07688 1.21265 0.75854 0.87840 0.84382 1.90669 1.53099 1.78781 1.21202 1.21880 0.96387 0.94202 0.90562 1.21528 0.99681 0.96611 0.99333 1.22283 0.93089 1.03613 1.03193 1.64382 1.50896 1.08380 1.02678 1.20919 0.91239 0.84651 0.87876 0.84847 1.20248 0.97622 0.95181 1.04167 1.20832 0.94223 0.96488 0.99192 1.21019 0.96074 1.00406 1.05499 1.19410 0.87251 0.92582 0.96965 1.84030 1.26303 1.37146 1.65049 1.21818 0.97774 0.93201 1.36108 0.88169 1.26548 0.94657 1.03944 0.96716 1.70213 1.07181 1.39084 1.38912 0.84631 0.78709 0.75020 0.78152 1.19048 1.19540 1.17512 1.18391 0.91993 0.88479 1.00000 1.86220 1.42636 1.26412 1.70552 1.23331 1.01199 0.81457 1.01724 1.20667 0.91289 1.01454 1.02681 0.91292 0.94119 0.89474 0.91175 0.87853 0.89251 0.92005 0.92082 0.93531 0.91575 0.88754 0.81407 0.84766 0.85930 0.91885 0.91100 0.91084 0.87596 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.23 71.98 0.74 -1.87 16 2 C 0.11 2.27 5.22 86.38 0.45 2.72 16 3 N -0.61 -14.25 2.16 -809.07 -1.75 -16.00 16 4 C 0.52 14.39 6.92 87.84 0.61 15.00 16 5 O -0.56 -19.31 17.68 -3.04 -0.05 -19.36 16 6 C 0.06 1.40 1.14 2.72 0.00 1.40 16 7 C -0.11 -2.07 8.85 71.98 0.64 -1.43 16 8 C -0.16 -3.72 8.40 71.98 0.60 -3.12 16 9 N -0.63 -11.53 7.21 -459.26 -3.31 -14.85 16 10 C 0.35 7.24 4.07 128.10 0.52 7.76 16 11 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.17 -4.54 3.95 -19.85 -0.08 -4.62 16 13 C -0.09 -2.84 9.11 22.27 0.20 -2.64 16 14 C -0.21 -8.77 9.16 22.38 0.21 -8.56 16 15 C 0.09 4.31 6.66 22.66 0.15 4.46 16 16 O -0.22 -13.16 9.54 -9.20 -0.09 -13.25 16 17 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 18 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 20 N -0.92 -56.51 13.67 21.61 0.30 -56.21 16 21 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 25 C 0.06 2.27 6.70 22.61 0.15 2.43 16 26 O -0.34 -13.96 10.28 -79.24 -0.81 -14.77 16 27 C 0.02 0.41 9.81 113.37 1.11 1.53 16 28 C -0.14 -4.00 7.85 22.35 0.18 -3.82 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.75 6.73 -2.39 -0.02 1.74 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.32 6.43 -2.39 -0.02 1.30 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.36 5.73 5.76 -89.69 -0.52 5.21 16 41 H 0.13 3.71 4.79 -2.91 -0.01 3.70 16 42 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 45 H 0.07 1.37 7.66 -2.39 -0.02 1.36 16 46 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.16 3.19 4.75 -2.91 -0.01 3.17 16 Total: -1.00 -78.53 377.01 3.39 -75.15 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.49 Total: 29.21 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 6.59 Total: -14.79 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -4.77 Total: -87.05 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.96 Total: -47.39 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -78.53 3.39 -75.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840833553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.888 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds