Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47178 * 2 1 4 4 C 1.34851 * 125.20830 * 274.50617 * 3 2 1 5 5 O 1.21279 * 125.74702 * 359.62250 * 4 3 2 6 6 C 1.51304 * 108.50692 * 179.61811 * 4 3 2 7 7 C 1.52997 * 110.38371 * 224.41842 * 6 4 3 8 8 C 1.53001 * 110.37886 * 102.06093 * 6 4 3 9 9 N 1.48238 * 104.76513 * 343.24091 * 6 4 3 10 10 C 1.46804 * 125.20633 * 94.56502 * 3 2 1 11 11 H 1.08999 * 110.17548 * 78.35597 * 10 3 2 12 12 C 1.50702 * 110.11912 * 316.71812 * 10 3 2 13 13 C 1.38322 * 119.90723 * 296.38714 * 12 10 3 14 14 C 1.38157 * 120.16552 * 179.97438 * 13 12 10 15 15 C 1.38752 * 119.98905 * 0.02562 * 14 13 12 16 16 O 1.35807 * 120.09038 * 179.72629 * 15 14 13 17 17 C 1.34801 * 117.00010 * 354.55562 * 16 15 14 18 18 H 1.07996 * 120.00059 * 5.05359 * 17 16 15 19 19 C 1.38638 * 120.00081 * 185.06064 * 17 16 15 20 20 N 1.31569 * 120.00130 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46752 * 90.00376 * 21 19 17 23 23 H 1.48497 * 109.47443 * 210.00131 * 21 19 17 24 24 H 1.48499 * 109.47070 * 330.00680 * 21 19 17 25 25 C 1.39337 * 119.81933 * 359.97438 * 15 14 13 26 26 O 1.35949 * 120.08933 * 179.97438 * 25 15 14 27 27 C 1.42891 * 117.00043 * 180.02562 * 26 25 15 28 28 C 1.38234 * 119.90768 * 116.35633 * 12 10 3 29 29 H 1.08998 * 109.47384 * 173.34623 * 1 2 3 30 30 H 1.09001 * 109.47459 * 293.34885 * 1 2 3 31 31 H 1.09005 * 109.46914 * 53.34814 * 1 2 3 32 32 H 1.09000 * 109.46795 * 239.99472 * 2 1 3 33 33 H 1.08999 * 109.46561 * 119.99924 * 2 1 3 34 34 H 1.08997 * 109.47237 * 175.34513 * 7 6 4 35 35 H 1.08999 * 109.47165 * 295.34678 * 7 6 4 36 36 H 1.09005 * 109.47067 * 55.34352 * 7 6 4 37 37 H 1.09000 * 109.47438 * 304.66069 * 8 6 4 38 38 H 1.08998 * 109.46905 * 64.65807 * 8 6 4 39 39 H 1.09002 * 109.47330 * 184.65710 * 8 6 4 40 40 H 1.00896 * 111.00273 * 267.39924 * 9 6 4 41 41 H 1.08001 * 119.91603 * 359.97081 * 13 12 10 42 42 H 1.08006 * 120.00383 * 179.97438 * 14 13 12 43 43 H 0.97007 * 120.00098 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47669 * 60.00109 * 27 26 25 45 45 H 1.09004 * 109.46848 * 180.02562 * 27 26 25 46 46 H 1.09008 * 109.47412 * 300.00180 * 27 26 25 47 47 H 1.08003 * 119.99159 * 0.03140 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1958 2.1430 -1.0984 5 8 1.9851 1.7978 -2.2418 6 6 2.7021 3.5011 -0.6642 7 6 1.9624 4.6105 -1.4145 8 6 4.2097 3.6088 -0.9023 9 7 2.4024 3.5701 0.7859 10 6 2.3904 2.1473 1.1957 11 1 3.3802 1.8482 1.5408 12 6 1.3741 1.9308 2.2871 13 6 0.0673 2.3459 2.1048 14 6 -0.8690 2.1497 3.1016 15 6 -0.4990 1.5353 4.2894 16 8 -1.4163 1.3464 5.2729 17 6 -2.6397 1.8784 5.0790 18 1 -2.8788 2.3545 4.1397 19 6 -3.5908 1.8144 6.0856 20 7 -4.7847 2.3341 5.8967 21 14 -3.1774 0.9904 7.7103 22 1 -2.6150 1.9966 8.6466 23 1 -4.4097 0.4040 8.2957 24 1 -2.1787 -0.0843 7.4803 25 6 0.8176 1.1174 4.4725 26 8 1.1862 0.5153 5.6343 27 6 2.5525 0.1139 5.7519 28 6 1.7502 1.3174 3.4675 29 1 -0.3634 -1.0207 -0.1191 30 1 -0.3634 0.4073 0.9435 31 1 -0.3633 0.6135 -0.8245 32 1 1.8932 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.2787 5.5810 -1.0323 35 1 2.1930 4.5460 -2.4779 36 1 0.8885 4.4946 -1.2680 37 1 4.7172 2.7881 -0.3954 38 1 4.4132 3.5565 -1.9719 39 1 4.5727 4.5586 -0.5095 40 1 1.5049 4.0011 0.9495 41 1 -0.2219 2.8247 1.1809 42 1 -1.8886 2.4752 2.9567 43 1 -5.4503 2.2890 6.6009 44 1 3.1974 0.9875 5.6574 45 1 2.7119 -0.3523 6.7242 46 1 2.7906 -0.6003 4.9635 47 1 2.7714 0.9946 3.6065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840833554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = -49.847388 kcal Electronic energy + Delta-G solvation = -30167.943659 eV Core-core repulsion = 26124.754291 eV Total energy + Delta-G solvation = -4043.189368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28772 -39.81101 -37.83157 -37.38567 -36.10808 -35.19201 -32.54898 -31.94756 -30.14419 -29.91487 -29.02217 -27.60792 -26.94924 -25.70985 -24.62828 -23.80365 -22.01600 -21.36616 -20.66587 -19.30450 -18.14345 -17.99297 -17.00282 -16.71643 -15.99826 -15.63963 -15.42666 -15.16428 -15.01869 -14.93211 -14.59104 -14.13913 -13.98609 -13.79831 -13.66684 -13.51035 -13.27907 -12.70015 -12.64478 -12.42814 -12.37948 -12.32086 -12.25776 -12.11616 -11.81054 -11.74459 -11.61435 -11.51435 -11.20266 -11.10560 -10.91257 -10.82531 -10.50686 -10.29802 -10.16339 -9.59720 -9.05512 -8.92667 -8.80790 -8.16782 -7.26679 -6.52137 -4.16275 1.75939 1.90744 2.46025 2.89703 3.18614 3.23028 3.40370 3.73578 3.80661 4.18535 4.19343 4.32972 4.55604 4.60022 4.68828 4.85404 4.99088 5.05906 5.14739 5.26401 5.31726 5.35596 5.40626 5.43114 5.43935 5.46913 5.52572 5.53850 5.55889 5.65683 5.71769 5.85159 5.88035 5.95840 5.98219 6.07019 6.11628 6.31048 6.35499 6.42865 6.61045 6.80250 6.98173 7.02465 7.12392 7.27894 7.52033 7.81281 7.97202 8.07167 8.82327 9.42964 10.54360 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.003452 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.343769 B = 8108.478333 C = 8699.694065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.136 3.864 3 N -0.628 5.628 4 C 0.498 3.502 5 O -0.525 6.525 6 C 0.060 3.940 7 C -0.141 4.141 8 C -0.119 4.119 9 N -0.637 5.637 10 C 0.340 3.660 11 H 0.099 0.901 12 C -0.171 4.171 13 C -0.074 4.074 14 C -0.199 4.199 15 C 0.150 3.850 16 O -0.197 6.197 17 C -0.390 4.390 18 H 0.108 0.892 19 C 0.067 3.933 20 N -0.872 5.872 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.255 1.255 25 C 0.058 3.942 26 O -0.307 6.307 27 C 0.030 3.970 28 C -0.141 4.141 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.352 0.648 41 H 0.105 0.895 42 H 0.142 0.858 43 H 0.281 0.719 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.232 -0.463 -8.513 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.014 3.986 3 N -0.364 5.364 4 C 0.283 3.717 5 O -0.401 6.401 6 C -0.035 4.035 7 C -0.199 4.199 8 C -0.177 4.177 9 N -0.270 5.270 10 C 0.148 3.852 11 H 0.116 0.884 12 C -0.174 4.174 13 C -0.094 4.094 14 C -0.219 4.219 15 C 0.096 3.904 16 O -0.101 6.101 17 C -0.465 4.465 18 H 0.125 0.875 19 C -0.138 4.138 20 N -0.509 5.509 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.179 1.179 25 C 0.013 3.987 26 O -0.221 6.221 27 C -0.065 4.065 28 C -0.161 4.161 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.172 0.828 41 H 0.123 0.877 42 H 0.159 0.841 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.415 -0.650 -8.359 18.432 hybrid contribution -0.763 -0.639 0.262 1.029 sum 15.652 -1.288 -8.097 17.669 Atomic orbital electron populations 1.22310 0.95310 1.02260 1.03505 1.21193 0.94829 0.80214 1.02363 1.49218 1.64758 1.14291 1.08153 1.21415 0.77031 0.88299 0.84953 1.90686 1.52143 1.77613 1.19629 1.21946 0.98622 0.93652 0.89251 1.21862 0.99753 0.97295 1.00991 1.21555 0.91156 1.03224 1.01750 1.64165 1.37849 1.12843 1.12136 1.21090 0.96778 0.83646 0.83673 0.88355 1.19022 0.94363 1.08591 0.95419 1.20346 0.92162 0.99145 0.97712 1.20975 1.01205 1.06427 0.93257 1.18430 0.86770 0.95760 0.89437 1.83659 1.21016 1.66554 1.38902 1.20800 0.85120 1.36764 1.03797 0.87499 1.24467 0.94036 0.96148 0.99123 1.69651 1.03839 1.42432 1.34975 0.86185 0.78310 0.80747 0.81849 1.19743 1.20764 1.17897 1.18113 0.91284 1.02039 0.87264 1.86190 1.27485 1.74098 1.34374 1.22923 0.82063 0.99123 1.02427 1.20458 0.98119 1.04112 0.93446 0.91777 0.90608 0.92749 0.90880 0.90151 0.90618 0.90701 0.92235 0.92328 0.91660 0.90618 0.82805 0.87717 0.84100 0.90849 0.93226 0.88994 0.93424 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.91 37.16 0.37 -1.95 16 2 C 0.14 1.67 6.11 -4.05 -0.02 1.64 16 3 N -0.63 -8.05 2.74 -169.69 -0.46 -8.51 16 4 C 0.50 6.90 6.92 -10.66 -0.07 6.82 16 5 O -0.53 -8.88 17.66 5.56 0.10 -8.78 16 6 C 0.06 0.66 1.14 -131.72 -0.15 0.51 16 7 C -0.14 -1.39 8.50 37.16 0.32 -1.07 16 8 C -0.12 -1.11 8.89 37.16 0.33 -0.78 16 9 N -0.64 -7.32 7.19 -96.51 -0.69 -8.01 16 10 C 0.34 4.15 3.94 -126.73 -0.50 3.65 16 11 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 12 C -0.17 -2.46 4.23 -104.59 -0.44 -2.90 16 13 C -0.07 -1.19 6.31 -39.58 -0.25 -1.44 16 14 C -0.20 -3.89 9.16 -39.42 -0.36 -4.25 16 15 C 0.15 3.27 6.66 -38.98 -0.26 3.01 16 16 O -0.20 -5.06 8.37 -14.47 -0.12 -5.19 16 17 C -0.39 -10.56 9.95 30.88 0.31 -10.25 16 18 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 19 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 20 N -0.87 -24.44 13.96 55.48 0.77 -23.67 16 21 Si 0.90 21.36 28.62 -169.99 -4.86 16.50 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.06 1.09 6.70 -39.05 -0.26 0.83 16 26 O -0.31 -5.71 10.28 -34.01 -0.35 -6.06 16 27 C 0.03 0.37 9.81 101.05 0.99 1.36 16 28 C -0.14 -2.12 8.66 -39.46 -0.34 -2.46 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.13 5.38 -51.93 -0.28 0.85 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.35 4.17 6.70 -39.29 -0.26 3.90 16 41 H 0.10 1.54 7.49 -52.49 -0.39 1.14 16 42 H 0.14 2.93 5.64 -52.48 -0.30 2.63 16 43 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.50 7.66 -51.92 -0.40 0.10 16 47 H 0.12 1.48 6.21 -52.48 -0.33 1.16 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -30.50 380.45 -7.17 -37.67 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.83 Total: 5.88 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.45 Total: -5.56 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.38 Total: -40.19 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.37 Total: -20.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.50 -7.17 -37.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840833554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.180 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds