Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47178 * 2 1 4 4 C 1.34851 * 125.20830 * 274.50617 * 3 2 1 5 5 O 1.21279 * 125.74702 * 359.62250 * 4 3 2 6 6 C 1.51304 * 108.50692 * 179.61811 * 4 3 2 7 7 C 1.52997 * 110.38371 * 224.41842 * 6 4 3 8 8 C 1.53001 * 110.37886 * 102.06093 * 6 4 3 9 9 N 1.48238 * 104.76513 * 343.24091 * 6 4 3 10 10 C 1.46804 * 125.20633 * 94.56502 * 3 2 1 11 11 H 1.08999 * 110.17548 * 78.35597 * 10 3 2 12 12 C 1.50702 * 110.11912 * 316.71812 * 10 3 2 13 13 C 1.38322 * 119.90723 * 296.38714 * 12 10 3 14 14 C 1.38157 * 120.16552 * 179.97438 * 13 12 10 15 15 C 1.38752 * 119.98905 * 0.02562 * 14 13 12 16 16 O 1.35807 * 120.09038 * 179.72629 * 15 14 13 17 17 C 1.34801 * 117.00010 * 354.55562 * 16 15 14 18 18 H 1.07996 * 120.00059 * 5.05359 * 17 16 15 19 19 C 1.38638 * 120.00081 * 185.06064 * 17 16 15 20 20 N 1.31569 * 120.00130 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00018 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46752 * 90.00376 * 21 19 17 23 23 H 1.48497 * 109.47443 * 210.00131 * 21 19 17 24 24 H 1.48499 * 109.47070 * 330.00680 * 21 19 17 25 25 C 1.39337 * 119.81933 * 359.97438 * 15 14 13 26 26 O 1.35949 * 120.08933 * 179.97438 * 25 15 14 27 27 C 1.42891 * 117.00043 * 180.02562 * 26 25 15 28 28 C 1.38234 * 119.90768 * 116.35633 * 12 10 3 29 29 H 1.08998 * 109.47384 * 173.34623 * 1 2 3 30 30 H 1.09001 * 109.47459 * 293.34885 * 1 2 3 31 31 H 1.09005 * 109.46914 * 53.34814 * 1 2 3 32 32 H 1.09000 * 109.46795 * 239.99472 * 2 1 3 33 33 H 1.08999 * 109.46561 * 119.99924 * 2 1 3 34 34 H 1.08997 * 109.47237 * 175.34513 * 7 6 4 35 35 H 1.08999 * 109.47165 * 295.34678 * 7 6 4 36 36 H 1.09005 * 109.47067 * 55.34352 * 7 6 4 37 37 H 1.09000 * 109.47438 * 304.66069 * 8 6 4 38 38 H 1.08998 * 109.46905 * 64.65807 * 8 6 4 39 39 H 1.09002 * 109.47330 * 184.65710 * 8 6 4 40 40 H 1.00896 * 111.00273 * 267.39924 * 9 6 4 41 41 H 1.08001 * 119.91603 * 359.97081 * 13 12 10 42 42 H 1.08006 * 120.00383 * 179.97438 * 14 13 12 43 43 H 0.97007 * 120.00098 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47669 * 60.00109 * 27 26 25 45 45 H 1.09004 * 109.46848 * 180.02562 * 27 26 25 46 46 H 1.09008 * 109.47412 * 300.00180 * 27 26 25 47 47 H 1.08003 * 119.99159 * 0.03140 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1958 2.1430 -1.0984 5 8 1.9851 1.7978 -2.2418 6 6 2.7021 3.5011 -0.6642 7 6 1.9624 4.6105 -1.4145 8 6 4.2097 3.6088 -0.9023 9 7 2.4024 3.5701 0.7859 10 6 2.3904 2.1473 1.1957 11 1 3.3802 1.8482 1.5408 12 6 1.3741 1.9308 2.2871 13 6 0.0673 2.3459 2.1048 14 6 -0.8690 2.1497 3.1016 15 6 -0.4990 1.5353 4.2894 16 8 -1.4163 1.3464 5.2729 17 6 -2.6397 1.8784 5.0790 18 1 -2.8788 2.3545 4.1397 19 6 -3.5908 1.8144 6.0856 20 7 -4.7847 2.3341 5.8967 21 14 -3.1774 0.9904 7.7103 22 1 -2.6150 1.9966 8.6466 23 1 -4.4097 0.4040 8.2957 24 1 -2.1787 -0.0843 7.4803 25 6 0.8176 1.1174 4.4725 26 8 1.1862 0.5153 5.6343 27 6 2.5525 0.1139 5.7519 28 6 1.7502 1.3174 3.4675 29 1 -0.3634 -1.0207 -0.1191 30 1 -0.3634 0.4073 0.9435 31 1 -0.3633 0.6135 -0.8245 32 1 1.8932 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.2787 5.5810 -1.0323 35 1 2.1930 4.5460 -2.4779 36 1 0.8885 4.4946 -1.2680 37 1 4.7172 2.7881 -0.3954 38 1 4.4132 3.5565 -1.9719 39 1 4.5727 4.5586 -0.5095 40 1 1.5049 4.0011 0.9495 41 1 -0.2219 2.8247 1.1809 42 1 -1.8886 2.4752 2.9567 43 1 -5.4503 2.2890 6.6009 44 1 3.1974 0.9875 5.6574 45 1 2.7119 -0.3523 6.7242 46 1 2.7906 -0.6003 4.9635 47 1 2.7714 0.9946 3.6065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840833554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = -70.599464 kcal Electronic energy + Delta-G solvation = -30168.843537 eV Core-core repulsion = 26124.754291 eV Total energy + Delta-G solvation = -4044.089246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.37864 -41.24553 -39.37682 -38.64395 -37.33874 -36.27053 -34.47592 -33.04565 -31.37518 -31.29811 -30.17547 -28.36933 -28.02189 -27.42237 -25.90757 -24.92996 -23.40939 -22.63994 -21.80050 -20.37660 -19.89612 -19.51928 -18.13420 -18.06554 -17.25001 -16.91646 -16.70548 -16.33969 -16.30584 -16.01133 -15.91587 -15.55772 -15.38737 -15.06947 -14.94134 -14.84612 -14.54253 -14.19869 -13.82641 -13.71025 -13.46459 -13.39613 -13.25857 -13.08861 -13.03728 -12.91711 -12.78146 -12.68303 -12.54382 -12.33270 -12.17609 -12.08401 -12.01343 -11.71004 -11.47905 -11.19294 -10.92339 -10.05745 -9.88554 -9.60277 -8.79563 -8.51105 -6.20574 0.34245 0.46985 1.30873 1.34038 1.38489 1.53082 1.85228 2.28293 2.51414 2.59352 2.89601 3.01098 3.11822 3.26784 3.50498 3.72701 3.93797 3.96071 4.06738 4.11055 4.21521 4.31008 4.36907 4.41242 4.49873 4.53023 4.54943 4.65863 4.70477 4.74093 4.76194 4.78591 4.82323 4.85202 4.88049 5.09671 5.11381 5.18512 5.23052 5.25843 5.31382 5.48221 5.56462 5.60217 5.76684 5.97931 6.00987 6.07915 6.58345 6.83783 6.99576 7.59022 8.60012 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.003452 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.343769 B = 8108.478333 C = 8699.694065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.627 5.627 4 C 0.491 3.509 5 O -0.560 6.560 6 C 0.064 3.936 7 C -0.140 4.140 8 C -0.116 4.116 9 N -0.630 5.630 10 C 0.342 3.658 11 H 0.128 0.872 12 C -0.136 4.136 13 C -0.074 4.074 14 C -0.200 4.200 15 C 0.104 3.896 16 O -0.234 6.234 17 C -0.396 4.396 18 H 0.085 0.915 19 C 0.015 3.985 20 N -0.920 5.920 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.265 1.265 25 C 0.060 3.940 26 O -0.341 6.341 27 C 0.018 3.982 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.350 0.650 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.284 0.716 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.564 -0.805 -8.997 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 N -0.362 5.362 4 C 0.278 3.722 5 O -0.438 6.438 6 C -0.030 4.030 7 C -0.199 4.199 8 C -0.174 4.174 9 N -0.263 5.263 10 C 0.150 3.850 11 H 0.146 0.854 12 C -0.138 4.138 13 C -0.093 4.093 14 C -0.219 4.219 15 C 0.054 3.946 16 O -0.141 6.141 17 C -0.472 4.472 18 H 0.102 0.898 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.192 1.192 24 H -0.190 1.190 25 C 0.015 3.985 26 O -0.256 6.256 27 C -0.076 4.076 28 C -0.146 4.146 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.169 0.831 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.088 0.912 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 20.807 -0.991 -8.860 22.637 hybrid contribution -1.749 -0.537 0.108 1.832 sum 19.059 -1.528 -8.752 21.028 Atomic orbital electron populations 1.22247 0.96391 1.02630 1.01633 1.21294 0.93793 0.80235 1.03545 1.49282 1.64369 1.14470 1.08123 1.21921 0.76417 0.89312 0.84546 1.90671 1.53619 1.78445 1.21016 1.22060 0.99983 0.92279 0.88677 1.21887 0.99086 0.97862 1.01016 1.21573 0.89392 1.04237 1.02152 1.64243 1.37638 1.11921 1.12475 1.21298 0.96904 0.84252 0.82546 0.85437 1.19396 0.93915 1.04781 0.95707 1.20412 0.92401 0.99283 0.97187 1.20927 1.00923 1.06190 0.93866 1.19041 0.87945 0.97945 0.89631 1.83611 1.20783 1.69033 1.40708 1.20722 0.86452 1.36874 1.03160 0.89756 1.25174 0.94002 0.97127 1.02111 1.69728 1.04854 1.45227 1.36214 0.85297 0.78112 0.79501 0.78356 1.19213 1.19233 1.18986 1.18304 0.90508 1.01283 0.88411 1.86158 1.31186 1.74036 1.34247 1.23339 0.79266 1.00593 1.04436 1.20879 0.99337 1.02389 0.91971 0.90520 0.92597 0.94261 0.90388 0.88308 0.88646 0.90710 0.93189 0.92003 0.91441 0.89019 0.83055 0.86440 0.86646 0.90584 0.91182 0.87267 0.91187 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 9.91 71.98 0.71 -3.60 16 2 C 0.13 2.88 6.11 86.38 0.53 3.41 16 3 N -0.63 -14.02 2.74 -809.12 -2.21 -16.24 16 4 C 0.49 12.36 6.92 87.84 0.61 12.97 16 5 O -0.56 -18.07 17.66 -3.03 -0.05 -18.12 16 6 C 0.06 1.22 1.14 2.71 0.00 1.22 16 7 C -0.14 -2.42 8.50 71.98 0.61 -1.80 16 8 C -0.12 -1.71 8.89 71.98 0.64 -1.07 16 9 N -0.63 -12.03 7.19 -459.25 -3.30 -15.33 16 10 C 0.34 6.83 3.94 128.10 0.50 7.33 16 11 H 0.13 2.02 7.92 -2.39 -0.02 2.00 16 12 C -0.14 -3.44 4.23 -19.84 -0.08 -3.52 16 13 C -0.07 -2.28 6.31 22.27 0.14 -2.14 16 14 C -0.20 -8.11 9.16 22.37 0.21 -7.90 16 15 C 0.10 4.67 6.66 22.66 0.15 4.82 16 16 O -0.23 -12.63 8.37 -9.28 -0.08 -12.70 16 17 C -0.40 -22.93 9.95 67.92 0.68 -22.26 16 18 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 19 C 0.01 0.85 5.49 84.83 0.47 1.31 16 20 N -0.92 -54.42 13.96 21.61 0.30 -54.12 16 21 Si 0.96 45.86 28.62 68.60 1.96 47.82 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.06 2.18 6.70 22.61 0.15 2.33 16 26 O -0.34 -12.08 10.28 -79.18 -0.81 -12.89 16 27 C 0.02 0.37 9.81 113.37 1.11 1.48 16 28 C -0.13 -3.28 8.66 22.35 0.19 -3.09 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.63 5.38 -2.39 -0.01 1.62 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.06 0.88 8.13 -2.39 -0.02 0.87 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.35 7.18 6.70 -89.70 -0.60 6.58 16 41 H 0.12 3.34 7.49 -2.91 -0.02 3.32 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 43 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 45 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 47 H 0.17 2.93 6.21 -2.91 -0.02 2.91 16 Total: -1.00 -71.69 380.45 2.82 -68.87 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.40 Total: 23.21 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 6.62 Total: -10.51 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -5.21 Total: -85.69 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.95 Total: -43.72 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.82 kcal Total: -71.69 2.82 -68.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840833554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.726 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds