Wall clock time and date at job start Tue Mar 31 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47547 * 2 1 4 4 O 1.45201 * 109.47356 * 120.00611 * 2 1 3 5 5 C 1.34228 * 117.00021 * 269.99959 * 4 2 1 6 6 O 1.20831 * 119.99607 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00057 * 180.27296 * 5 4 2 8 8 C 1.52999 * 109.47111 * 179.71980 * 7 5 4 9 9 C 1.52995 * 109.47263 * 180.02562 * 8 7 5 10 10 C 1.50705 * 109.47259 * 180.02562 * 9 8 7 11 11 C 1.38669 * 120.41914 * 269.71907 * 10 9 8 12 12 C 1.38630 * 118.41935 * 179.77915 * 11 10 9 13 13 C 1.38225 * 119.16069 * 0.52221 * 12 11 10 14 14 N 1.31859 * 120.76342 * 359.71470 * 13 12 11 15 15 C 1.31884 * 121.72375 * 0.02562 * 14 13 12 16 16 C 1.50706 * 109.46852 * 240.00230 * 2 1 3 17 17 O 1.21283 * 120.00104 * 248.57242 * 16 2 1 18 18 N 1.34781 * 119.99782 * 68.56840 * 16 2 1 19 19 C 1.46494 * 119.99813 * 4.58361 * 18 16 2 20 20 C 1.46498 * 119.99723 * 184.58657 * 18 16 2 21 21 C 1.50698 * 109.47358 * 89.99843 * 20 18 16 22 22 H 1.08003 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31516 * 119.99850 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47276 * 89.99798 * 25 23 21 27 27 H 1.48497 * 109.47105 * 210.00332 * 25 23 21 28 28 H 1.48503 * 109.47066 * 330.00226 * 25 23 21 29 29 H 1.08996 * 109.47664 * 187.15019 * 1 2 3 30 30 H 1.09009 * 109.46529 * 307.14729 * 1 2 3 31 31 H 1.08999 * 109.47103 * 67.14088 * 1 2 3 32 32 H 1.08993 * 109.47238 * 299.72237 * 7 5 4 33 33 H 1.09002 * 109.46939 * 59.72351 * 7 5 4 34 34 H 1.08999 * 109.47535 * 300.00558 * 8 7 5 35 35 H 1.09007 * 109.47202 * 59.99977 * 8 7 5 36 36 H 1.09000 * 109.46922 * 299.99976 * 9 8 7 37 37 H 1.09002 * 109.46904 * 60.00300 * 9 8 7 38 38 H 1.08005 * 120.78827 * 0.02819 * 11 10 9 39 39 H 1.07997 * 120.41404 * 180.22085 * 12 11 10 40 40 H 1.07992 * 119.62036 * 179.74696 * 13 12 11 41 41 H 1.08007 * 119.61554 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.47084 * 86.12360 * 19 18 16 43 43 H 1.09005 * 109.47044 * 206.11723 * 19 18 16 44 44 H 1.09000 * 109.47650 * 326.12127 * 19 18 16 45 45 H 1.08996 * 109.46964 * 210.00421 * 20 18 16 46 46 H 1.09000 * 109.47111 * 329.99773 * 20 18 16 47 47 H 0.96998 * 119.99862 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0638 2.2811 6 8 1.9982 1.2517 2.2504 7 6 2.7248 -0.5764 3.5474 8 6 2.8748 0.4906 4.6336 9 6 3.3907 -0.1592 5.9191 10 6 3.5378 0.8917 6.9892 11 6 4.7339 1.5768 7.1407 12 6 4.8221 2.5383 8.1355 13 6 3.7262 2.7727 8.9447 14 7 2.6059 2.0983 8.7749 15 6 2.4846 1.1803 7.8357 16 6 2.0323 -0.7104 -1.2306 17 8 2.5962 -1.7791 -1.1261 18 7 1.8547 -0.1581 -2.4471 19 6 1.2644 1.1773 -2.5662 20 6 2.2521 -0.8933 -3.6503 21 6 1.0931 -1.7246 -4.1368 22 1 0.1542 -1.7067 -3.6033 23 6 1.2309 -2.5073 -5.2636 24 7 2.3741 -2.5287 -5.9135 25 14 -0.2059 -3.5371 -5.8670 26 1 -1.0187 -2.7416 -6.8218 27 1 0.3078 -4.7530 -6.5473 28 1 -1.0492 -3.9355 -4.7114 29 1 -0.3634 -1.0196 0.1279 30 1 -0.3633 0.6206 0.8192 31 1 -0.3633 0.3992 -0.9469 32 1 2.0171 -1.3360 3.8795 33 1 3.6928 -1.0400 3.3574 34 1 3.5824 1.2502 4.3016 35 1 1.9067 0.9543 4.8237 36 1 2.6832 -0.9190 6.2513 37 1 4.3588 -0.6225 5.7287 38 1 5.5754 1.3692 6.4963 39 1 5.7370 3.0936 8.2795 40 1 3.7881 3.5171 9.7246 41 1 1.5511 0.6480 7.7272 42 1 2.0471 1.9302 -2.4732 43 1 0.7799 1.2751 -3.5377 44 1 0.5270 1.3204 -1.7763 45 1 2.5444 -0.1873 -4.4275 46 1 3.0938 -1.5452 -3.4164 47 1 2.4709 -3.0790 -6.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849859753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:26 Heat of formation + Delta-G solvation = -92.634091 kcal Electronic energy + Delta-G solvation = -27585.720608 eV Core-core repulsion = 23540.675869 eV Total energy + Delta-G solvation = -4045.044739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78209 -40.50862 -39.00153 -36.69291 -35.62051 -34.93029 -32.94740 -32.71088 -31.98709 -31.39886 -27.98479 -27.68487 -26.16903 -24.64906 -23.95692 -23.74596 -22.47820 -21.57280 -20.52414 -18.86645 -17.92235 -17.44466 -16.95319 -16.71408 -16.55488 -16.35318 -15.89887 -15.53273 -15.00479 -14.97882 -14.57145 -14.42461 -14.28203 -13.83950 -13.69046 -13.44693 -13.11589 -12.91116 -12.85861 -12.55762 -12.39474 -12.18122 -12.09074 -12.01757 -11.71655 -11.59977 -11.35263 -11.22472 -11.14044 -10.92176 -10.71724 -10.58526 -10.53451 -10.19431 -10.17537 -9.81639 -9.67854 -9.34435 -8.92928 -8.47662 -7.74217 -6.08532 -4.13890 0.70356 0.88828 2.14255 2.48553 3.22004 3.27677 3.34679 3.39200 3.41484 3.86673 4.03723 4.26996 4.36775 4.40323 4.52637 4.55991 4.57966 4.73360 4.78279 4.81701 4.96200 5.02136 5.07660 5.10845 5.23769 5.26236 5.26737 5.32487 5.43077 5.45702 5.62757 5.66600 5.71864 5.74768 5.84788 5.88895 5.92760 6.05322 6.25889 6.30975 6.44683 6.96697 7.37428 7.44484 7.58873 7.70620 7.87477 8.17154 8.27219 8.81558 8.96624 9.51273 10.99549 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.001734 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.752252 B =16142.162950 C =16179.932974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.326 6.326 5 C 0.459 3.541 6 O -0.513 6.513 7 C -0.114 4.114 8 C -0.103 4.103 9 C -0.078 4.078 10 C -0.130 4.130 11 C -0.073 4.073 12 C -0.171 4.171 13 C 0.090 3.910 14 N -0.485 5.485 15 C 0.101 3.899 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.067 3.933 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 9.869 25.612 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.241 6.241 5 C 0.302 3.698 6 O -0.402 6.402 7 C -0.151 4.151 8 C -0.141 4.141 9 C -0.116 4.116 10 C -0.132 4.132 11 C -0.099 4.099 12 C -0.190 4.190 13 C -0.066 4.066 14 N -0.193 5.193 15 C -0.056 4.056 16 C 0.293 3.707 17 O -0.397 6.397 18 N -0.329 5.329 19 C -0.076 4.076 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.785 9.737 25.985 27.807 hybrid contribution -0.073 -0.491 -1.133 1.237 sum 1.712 9.246 24.853 26.572 Atomic orbital electron populations 1.22294 0.92271 1.04144 1.04022 1.22624 0.95922 0.97357 0.82878 0.87971 1.86637 1.76322 1.41527 1.19617 1.23811 0.74246 0.85966 0.85748 1.90647 1.48484 1.16705 1.84378 1.21406 1.04327 0.99935 0.89471 1.21417 1.03191 0.97235 0.92226 1.20570 1.02988 0.95702 0.92324 1.20888 0.94866 0.99119 0.98338 1.21559 0.97455 0.94195 0.96691 1.22171 1.00563 0.99307 0.96994 1.22776 0.88502 0.97364 0.98006 1.67696 1.25835 1.06395 1.19375 1.22724 0.98254 0.94080 0.90530 1.19787 0.80880 0.86143 0.83854 1.90695 1.41722 1.21497 1.85790 1.48062 1.60769 1.17245 1.06866 1.21976 0.97877 0.84192 1.03603 1.19364 0.96803 0.91645 0.79491 1.21427 0.98412 1.26399 1.10631 0.92341 1.24942 0.96106 0.96593 0.96442 1.69932 1.24056 1.40295 1.18917 0.86474 0.82217 0.79808 0.78796 1.20608 1.21043 1.19869 0.90656 0.91303 0.88999 0.87323 0.87275 0.90733 0.90627 0.90043 0.90178 0.84731 0.84759 0.82861 0.82775 0.93446 0.90121 0.91672 0.94646 0.93586 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.14 37.16 0.34 -2.05 16 2 C 0.07 1.17 2.16 -27.88 -0.06 1.11 16 3 H 0.10 1.57 6.73 -51.93 -0.35 1.22 16 4 O -0.33 -5.30 9.43 -45.85 -0.43 -5.73 16 5 C 0.46 6.05 7.93 36.01 0.29 6.34 16 6 O -0.51 -7.68 15.20 -18.75 -0.29 -7.96 16 7 C -0.11 -0.95 5.81 -27.88 -0.16 -1.11 16 8 C -0.10 -0.77 4.49 -26.73 -0.12 -0.89 16 9 C -0.08 -0.43 5.37 -27.88 -0.15 -0.58 16 10 C -0.13 -0.92 5.15 -104.48 -0.54 -1.46 16 11 C -0.07 -0.48 9.86 -39.28 -0.39 -0.87 16 12 C -0.17 -1.08 10.11 -39.44 -0.40 -1.48 16 13 C 0.09 0.67 11.18 -17.54 -0.20 0.48 16 14 N -0.48 -4.61 10.36 -13.25 -0.14 -4.74 16 15 C 0.10 0.82 10.86 -17.55 -0.19 0.63 16 16 C 0.51 10.89 7.03 -10.98 -0.08 10.82 16 17 O -0.52 -13.47 16.08 -13.95 -0.22 -13.70 16 18 N -0.60 -12.63 2.86 -182.96 -0.52 -13.15 16 19 C 0.07 1.05 9.80 59.84 0.59 1.64 16 20 C 0.25 6.38 5.18 -5.20 -0.03 6.35 16 21 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 22 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 25 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.09 1.22 5.46 -51.93 -0.28 0.94 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 37 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 44 H 0.06 0.85 4.31 -51.93 -0.22 0.63 16 45 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 46 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -36.20 398.42 -8.51 -44.71 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.11 Total: -1.89 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.52 Total: 5.44 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.08 Total: -43.44 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.94 Total: -27.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.20 -8.51 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849859753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.927 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds