Wall clock time and date at job start Tue Mar 31 2020 18:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47547 * 2 1 4 4 O 1.45201 * 109.47356 * 120.00611 * 2 1 3 5 5 C 1.34228 * 117.00021 * 269.99959 * 4 2 1 6 6 O 1.20831 * 119.99607 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00057 * 180.27296 * 5 4 2 8 8 C 1.52999 * 109.47111 * 179.71980 * 7 5 4 9 9 C 1.52995 * 109.47263 * 180.02562 * 8 7 5 10 10 C 1.50705 * 109.47259 * 180.02562 * 9 8 7 11 11 C 1.38669 * 120.41914 * 269.71907 * 10 9 8 12 12 C 1.38630 * 118.41935 * 179.77915 * 11 10 9 13 13 C 1.38225 * 119.16069 * 0.52221 * 12 11 10 14 14 N 1.31859 * 120.76342 * 359.71470 * 13 12 11 15 15 C 1.31884 * 121.72375 * 0.02562 * 14 13 12 16 16 C 1.50706 * 109.46852 * 240.00230 * 2 1 3 17 17 O 1.21283 * 120.00104 * 248.57242 * 16 2 1 18 18 N 1.34781 * 119.99782 * 68.56840 * 16 2 1 19 19 C 1.46494 * 119.99813 * 4.58361 * 18 16 2 20 20 C 1.46498 * 119.99723 * 184.58657 * 18 16 2 21 21 C 1.50698 * 109.47358 * 89.99843 * 20 18 16 22 22 H 1.08003 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31516 * 119.99850 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47276 * 89.99798 * 25 23 21 27 27 H 1.48497 * 109.47105 * 210.00332 * 25 23 21 28 28 H 1.48503 * 109.47066 * 330.00226 * 25 23 21 29 29 H 1.08996 * 109.47664 * 187.15019 * 1 2 3 30 30 H 1.09009 * 109.46529 * 307.14729 * 1 2 3 31 31 H 1.08999 * 109.47103 * 67.14088 * 1 2 3 32 32 H 1.08993 * 109.47238 * 299.72237 * 7 5 4 33 33 H 1.09002 * 109.46939 * 59.72351 * 7 5 4 34 34 H 1.08999 * 109.47535 * 300.00558 * 8 7 5 35 35 H 1.09007 * 109.47202 * 59.99977 * 8 7 5 36 36 H 1.09000 * 109.46922 * 299.99976 * 9 8 7 37 37 H 1.09002 * 109.46904 * 60.00300 * 9 8 7 38 38 H 1.08005 * 120.78827 * 0.02819 * 11 10 9 39 39 H 1.07997 * 120.41404 * 180.22085 * 12 11 10 40 40 H 1.07992 * 119.62036 * 179.74696 * 13 12 11 41 41 H 1.08007 * 119.61554 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.47084 * 86.12360 * 19 18 16 43 43 H 1.09005 * 109.47044 * 206.11723 * 19 18 16 44 44 H 1.09000 * 109.47650 * 326.12127 * 19 18 16 45 45 H 1.08996 * 109.46964 * 210.00421 * 20 18 16 46 46 H 1.09000 * 109.47111 * 329.99773 * 20 18 16 47 47 H 0.96998 * 119.99862 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0638 2.2811 6 8 1.9982 1.2517 2.2504 7 6 2.7248 -0.5764 3.5474 8 6 2.8748 0.4906 4.6336 9 6 3.3907 -0.1592 5.9191 10 6 3.5378 0.8917 6.9892 11 6 4.7339 1.5768 7.1407 12 6 4.8221 2.5383 8.1355 13 6 3.7262 2.7727 8.9447 14 7 2.6059 2.0983 8.7749 15 6 2.4846 1.1803 7.8357 16 6 2.0323 -0.7104 -1.2306 17 8 2.5962 -1.7791 -1.1261 18 7 1.8547 -0.1581 -2.4471 19 6 1.2644 1.1773 -2.5662 20 6 2.2521 -0.8933 -3.6503 21 6 1.0931 -1.7246 -4.1368 22 1 0.1542 -1.7067 -3.6033 23 6 1.2309 -2.5073 -5.2636 24 7 2.3741 -2.5287 -5.9135 25 14 -0.2059 -3.5371 -5.8670 26 1 -1.0187 -2.7416 -6.8218 27 1 0.3078 -4.7530 -6.5473 28 1 -1.0492 -3.9355 -4.7114 29 1 -0.3634 -1.0196 0.1279 30 1 -0.3633 0.6206 0.8192 31 1 -0.3633 0.3992 -0.9469 32 1 2.0171 -1.3360 3.8795 33 1 3.6928 -1.0400 3.3574 34 1 3.5824 1.2502 4.3016 35 1 1.9067 0.9543 4.8237 36 1 2.6832 -0.9190 6.2513 37 1 4.3588 -0.6225 5.7287 38 1 5.5754 1.3692 6.4963 39 1 5.7370 3.0936 8.2795 40 1 3.7881 3.5171 9.7246 41 1 1.5511 0.6480 7.7272 42 1 2.0471 1.9302 -2.4732 43 1 0.7799 1.2751 -3.5377 44 1 0.5270 1.3204 -1.7763 45 1 2.5444 -0.1873 -4.4275 46 1 3.0938 -1.5452 -3.4164 47 1 2.4709 -3.0790 -6.7064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849859753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:25 Heat of formation + Delta-G solvation = -114.032158 kcal Electronic energy + Delta-G solvation = -27586.648497 eV Core-core repulsion = 23540.675869 eV Total energy + Delta-G solvation = -4045.972629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92895 -41.06758 -40.54680 -37.83157 -36.71796 -36.27903 -34.89090 -33.43415 -32.99824 -32.26923 -29.66985 -28.52755 -27.65473 -26.02757 -24.95852 -24.46311 -23.79699 -22.24286 -21.46291 -20.43912 -19.00315 -18.69660 -18.13050 -17.93405 -17.61524 -17.35927 -17.22044 -16.76926 -16.32275 -16.19839 -15.73532 -15.58290 -14.98799 -14.81542 -14.72615 -14.37211 -14.25774 -13.95335 -13.89037 -13.69385 -13.61105 -13.47880 -13.29735 -13.13777 -12.99421 -12.81704 -12.65323 -12.60114 -12.37960 -12.20974 -12.19329 -11.92152 -11.72330 -11.66230 -11.58801 -10.69679 -10.64621 -10.62773 -10.35187 -9.85285 -9.52899 -8.23495 -6.38457 0.19777 0.38051 1.11505 1.35382 1.38327 1.40886 1.50742 1.59181 2.32873 2.44772 2.89231 3.06665 3.38681 3.55667 3.56809 3.75512 3.79275 3.83336 3.92367 4.09197 4.10175 4.20958 4.22302 4.25972 4.40872 4.55943 4.57362 4.60443 4.64037 4.67794 4.76314 4.84597 4.85804 4.93988 4.98913 5.09489 5.11544 5.19504 5.23978 5.32209 5.41225 5.44924 5.51411 5.77609 5.83850 6.02583 6.53305 6.68161 6.70482 7.06362 7.19019 7.35263 8.84005 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.001734 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.752252 B =16142.162950 C =16179.932974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.346 6.346 5 C 0.456 3.544 6 O -0.533 6.533 7 C -0.108 4.108 8 C -0.094 4.094 9 C -0.070 4.070 10 C -0.135 4.135 11 C -0.083 4.083 12 C -0.171 4.171 13 C 0.074 3.926 14 N -0.518 5.518 15 C 0.083 3.917 16 C 0.500 3.500 17 O -0.579 6.579 18 N -0.600 5.600 19 C 0.061 3.939 20 C 0.258 3.742 21 C -0.545 4.545 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.927 5.927 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.000 1.000 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 10.400 26.690 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.136 0.864 4 O -0.262 6.262 5 C 0.301 3.699 6 O -0.422 6.422 7 C -0.145 4.145 8 C -0.132 4.132 9 C -0.108 4.108 10 C -0.137 4.137 11 C -0.109 4.109 12 C -0.191 4.191 13 C -0.082 4.082 14 N -0.227 5.227 15 C -0.074 4.074 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.332 5.332 19 C -0.081 4.081 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.794 3.206 26 H -0.188 1.188 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.188 0.812 41 H 0.182 0.818 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.741 10.326 27.080 28.991 hybrid contribution 0.324 -0.586 -1.424 1.574 sum 1.066 9.740 25.656 27.463 Atomic orbital electron populations 1.22286 0.90066 1.04236 1.05450 1.22459 0.97302 0.96859 0.81148 0.86421 1.86659 1.76835 1.42570 1.20146 1.24760 0.73395 0.85848 0.85901 1.90632 1.49440 1.17594 1.84577 1.21598 1.05454 1.00414 0.87047 1.21327 1.02382 0.96748 0.92757 1.20544 1.04134 0.95412 0.90693 1.21051 0.94766 0.99436 0.98433 1.21911 0.97957 0.94053 0.96966 1.22469 1.01087 0.99164 0.96368 1.23173 0.88505 0.97708 0.98852 1.67676 1.27098 1.07465 1.20457 1.22999 0.99214 0.94317 0.90828 1.20691 0.79758 0.85688 0.85190 1.90653 1.44215 1.24179 1.86789 1.48049 1.60654 1.18833 1.05682 1.22291 0.99275 0.81648 1.04851 1.18863 0.95031 0.91186 0.81164 1.21703 0.98741 1.27033 1.10921 0.92373 1.25875 0.98935 0.97735 0.96593 1.70054 1.26119 1.41117 1.19405 0.85380 0.78749 0.78083 0.78392 1.18789 1.20756 1.19613 0.91577 0.88819 0.88192 0.84922 0.85685 0.92030 0.91674 0.88495 0.88729 0.82950 0.82393 0.81173 0.81789 0.91003 0.90187 0.88527 0.95243 0.98148 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.14 71.98 0.66 -3.58 16 2 C 0.08 2.58 2.16 29.85 0.06 2.65 16 3 H 0.12 3.39 6.73 -2.39 -0.02 3.37 16 4 O -0.35 -10.94 9.43 -45.08 -0.43 -11.36 16 5 C 0.46 11.31 7.93 71.24 0.56 11.88 16 6 O -0.53 -15.08 15.20 21.95 0.33 -14.75 16 7 C -0.11 -1.56 5.81 29.85 0.17 -1.38 16 8 C -0.09 -1.23 4.49 30.59 0.14 -1.09 16 9 C -0.07 -0.61 5.37 29.85 0.16 -0.45 16 10 C -0.13 -1.71 5.15 -19.77 -0.10 -1.81 16 11 C -0.08 -0.96 9.86 22.47 0.22 -0.74 16 12 C -0.17 -1.91 10.11 22.36 0.23 -1.69 16 13 C 0.07 1.05 11.18 84.69 0.95 2.00 16 14 N -0.52 -9.71 10.36 -195.84 -2.03 -11.74 16 15 C 0.08 1.29 10.86 84.67 0.92 2.21 16 16 C 0.50 21.65 7.03 87.66 0.62 22.27 16 17 O -0.58 -31.08 16.08 15.61 0.25 -30.83 16 18 N -0.60 -25.61 2.86 -851.14 -2.43 -28.04 16 19 C 0.06 1.81 9.80 127.77 1.25 3.06 16 20 C 0.26 13.90 5.18 85.63 0.44 14.34 16 21 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 22 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 23 C 0.01 0.44 5.46 84.65 0.46 0.91 16 24 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 25 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.10 2.40 5.46 -2.39 -0.01 2.38 16 32 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 36 H 0.10 0.56 8.09 -2.39 -0.02 0.54 16 37 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 38 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.40 8.04 -2.38 -0.02 2.38 16 44 H 0.10 2.26 4.31 -2.39 -0.01 2.25 16 45 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 46 H 0.00 0.02 7.36 -2.39 -0.02 0.01 16 47 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -81.66 398.42 5.96 -75.70 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.96 Total: 12.25 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.99 Total: 17.82 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.18 Total: -95.10 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: 0.16 Total: -56.93 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -81.66 5.96 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849859753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.333 kcal (2) G-P(sol) polarization free energy of solvation -81.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds