Wall clock time and date at job start Tue Mar 31 2020 18:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41593 * 114.00578 * 2 1 4 4 C 1.46506 * 119.99915 * 275.05862 * 3 2 1 5 5 C 1.34780 * 120.00223 * 95.04965 * 3 2 1 6 6 O 1.21276 * 119.99670 * 5.04594 * 5 3 2 7 7 C 1.50696 * 120.00143 * 185.03747 * 5 3 2 8 8 H 1.09004 * 109.46917 * 47.05310 * 7 5 3 9 9 C 1.53003 * 109.47244 * 287.05540 * 7 5 3 10 10 N 1.46506 * 109.47057 * 167.05354 * 7 5 3 11 11 C 1.34771 * 119.99578 * 204.72712 * 10 7 5 12 12 O 1.21274 * 120.00581 * 0.27289 * 11 10 7 13 13 C 1.50705 * 119.99699 * 180.27629 * 11 10 7 14 14 C 1.52997 * 109.47325 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47298 * 305.66694 * 14 13 11 16 16 C 1.50706 * 109.46873 * 65.66620 * 14 13 11 17 17 H 1.08003 * 119.99531 * 30.80918 * 16 14 13 18 18 C 1.37872 * 120.00109 * 210.81071 * 16 14 13 19 19 N 1.31509 * 120.00338 * 181.59399 * 18 16 14 20 20 Si 1.86804 * 119.99660 * 1.59307 * 18 16 14 21 21 H 1.48500 * 109.47070 * 93.45973 * 20 18 16 22 22 H 1.48511 * 109.46987 * 213.45493 * 20 18 16 23 23 H 1.48494 * 109.47440 * 333.45440 * 20 18 16 24 24 C 1.50699 * 109.47397 * 185.66523 * 14 13 11 25 25 C 1.38235 * 119.99745 * 293.14464 * 24 14 13 26 26 C 1.38240 * 119.99680 * 179.78613 * 25 24 14 27 27 C 1.38233 * 119.99989 * 0.44042 * 26 25 24 28 28 C 1.38234 * 120.00166 * 359.81018 * 27 26 25 29 29 C 1.38231 * 120.00280 * 113.40995 * 24 14 13 30 30 H 1.09004 * 109.46632 * 305.00206 * 1 2 3 31 31 H 1.08996 * 109.47230 * 64.99454 * 1 2 3 32 32 H 1.08998 * 109.47561 * 185.00353 * 1 2 3 33 33 H 1.09003 * 109.46594 * 269.99633 * 4 3 2 34 34 H 1.08996 * 109.47250 * 29.99593 * 4 3 2 35 35 H 1.08999 * 109.47190 * 149.99824 * 4 3 2 36 36 H 1.09000 * 109.46997 * 63.31501 * 9 7 5 37 37 H 1.08995 * 109.47133 * 183.31705 * 9 7 5 38 38 H 1.09004 * 109.46939 * 303.31210 * 9 7 5 39 39 H 0.96998 * 119.99417 * 24.99930 * 10 7 5 40 40 H 1.08999 * 109.46975 * 299.99797 * 13 11 10 41 41 H 1.09008 * 109.47201 * 59.99706 * 13 11 10 42 42 H 0.97001 * 120.00548 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.00412 * 359.97438 * 25 24 14 44 44 H 1.07996 * 120.00072 * 180.27231 * 26 25 24 45 45 H 1.08003 * 119.99851 * 179.83671 * 27 26 25 46 46 H 1.08000 * 120.00525 * 180.02562 * 28 27 26 47 47 H 1.08006 * 119.99569 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.2009 2.0081 -1.2638 5 6 2.3731 1.8673 1.1627 6 8 2.2962 1.2416 2.1987 7 6 2.8803 3.2863 1.1752 8 1 2.2154 3.9151 0.5830 9 6 4.2887 3.3298 0.5789 10 7 2.9185 3.7790 2.5544 11 6 2.8472 5.1024 2.7993 12 8 2.7465 5.8850 1.8784 13 6 2.8928 5.6097 4.2177 14 6 2.7956 7.1365 4.2167 15 1 3.5717 7.5496 3.5725 16 6 1.4416 7.5533 3.7026 17 1 0.5826 6.9201 3.8687 18 6 1.2996 8.7428 3.0201 19 7 0.1127 9.1216 2.5988 20 14 2.7930 9.8165 2.6940 21 1 3.3557 9.4896 1.3591 22 1 2.3913 11.2459 2.7252 23 1 3.8191 9.5678 3.7382 24 6 2.9806 7.6527 5.6204 25 6 2.0318 7.3793 6.5879 26 6 2.2037 7.8490 7.8766 27 6 3.3197 8.5998 8.1956 28 6 4.2658 8.8776 7.2268 29 6 4.0961 8.4041 5.9392 30 1 -0.3633 0.5895 0.8418 31 1 -0.3633 0.4344 -0.9313 32 1 -0.3634 -1.0237 0.0896 33 1 3.1846 1.7689 -1.6678 34 1 1.4325 1.7054 -1.9752 35 1 2.1312 3.0817 -1.0887 36 1 4.2508 3.0191 -0.4652 37 1 4.6786 4.3457 0.6418 38 1 4.9398 2.6556 1.1353 39 1 2.9991 3.1530 3.2910 40 1 2.0573 5.1924 4.7798 41 1 3.8310 5.3060 4.6823 42 1 0.0128 9.9583 2.1184 43 1 1.1579 6.7962 6.3378 44 1 1.4648 7.6317 8.6336 45 1 3.4527 8.9690 9.2018 46 1 5.1380 9.4638 7.4760 47 1 4.8354 8.6210 5.1822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863630889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:58 Heat of formation + Delta-G solvation = -32.044510 kcal Electronic energy + Delta-G solvation = -29128.493035 eV Core-core repulsion = 25086.075658 eV Total energy + Delta-G solvation = -4042.417377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42512 -39.09410 -38.35043 -37.29173 -35.12282 -34.10435 -33.69294 -31.69888 -30.54485 -30.17832 -28.72743 -27.62351 -26.59341 -25.95083 -24.05251 -22.58086 -21.84947 -20.60907 -19.90766 -19.29462 -17.82784 -17.46813 -16.93116 -16.35160 -16.27987 -16.07857 -15.65668 -14.83465 -14.72657 -14.53376 -14.38064 -14.09681 -13.93251 -13.83904 -13.53110 -13.22367 -12.95706 -12.74514 -12.61783 -12.52854 -12.48651 -12.28348 -12.14611 -11.93605 -11.79255 -11.59862 -11.03488 -10.82552 -10.75324 -10.52248 -10.34631 -9.95318 -9.89205 -9.59096 -9.26995 -9.23244 -9.00245 -8.79378 -8.43309 -8.17321 -7.80094 -5.98312 -3.95596 1.48592 2.11814 2.16357 2.28653 3.35864 3.42114 3.47330 3.49657 3.50183 4.06985 4.23812 4.52849 4.59021 4.81729 4.93537 4.96605 4.99626 5.01789 5.10649 5.27378 5.30239 5.33287 5.45372 5.53595 5.58392 5.62108 5.70764 5.75730 5.95158 6.00746 6.06087 6.10948 6.27195 6.34555 6.39747 6.60573 6.67398 6.70729 6.84729 6.88825 7.03328 7.16447 7.28700 7.59198 7.73718 7.83615 7.83876 7.95786 8.52968 8.88775 9.00806 9.66144 11.14614 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003131 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.301446 B = 8940.500137 C = 9729.749611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.139 6.139 3 N -0.485 5.485 4 C 0.072 3.928 5 C 0.518 3.482 6 O -0.515 6.515 7 C 0.137 3.863 8 H 0.116 0.884 9 C -0.163 4.163 10 N -0.732 5.732 11 C 0.520 3.480 12 O -0.500 6.500 13 C -0.115 4.115 14 C 0.057 3.943 15 H 0.050 0.950 16 C -0.487 4.487 17 H 0.070 0.930 18 C 0.084 3.916 19 N -0.900 5.900 20 Si 0.868 3.132 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.252 1.252 24 C -0.041 4.041 25 C -0.098 4.098 26 C -0.129 4.129 27 C -0.148 4.148 28 C -0.129 4.129 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.261 0.739 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -13.373 -3.277 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.141 6.141 3 N -0.266 5.266 4 C -0.069 4.069 5 C 0.307 3.693 6 O -0.388 6.388 7 C 0.028 3.972 8 H 0.134 0.866 9 C -0.222 4.222 10 N -0.391 5.391 11 C 0.307 3.693 12 O -0.372 6.372 13 C -0.155 4.155 14 C 0.037 3.963 15 H 0.068 0.932 16 C -0.524 4.524 17 H 0.088 0.912 18 C -0.118 4.118 19 N -0.538 5.538 20 Si 0.696 3.304 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.176 1.176 24 C -0.042 4.042 25 C -0.116 4.116 26 C -0.147 4.147 27 C -0.166 4.166 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.954 -13.144 -3.494 14.847 hybrid contribution 0.153 0.404 -0.092 0.442 sum 6.108 -12.740 -3.585 14.576 Atomic orbital electron populations 1.23343 0.81614 1.03881 1.01354 1.90665 1.20110 1.06584 1.96739 1.49847 1.59118 1.10278 1.07337 1.22283 1.02915 0.96961 0.84732 1.21288 0.77179 0.88430 0.82449 1.90701 1.53070 1.63445 1.31586 1.20614 0.99137 0.89827 0.87659 0.86644 1.22232 0.94722 1.04381 1.00831 1.46043 1.78182 1.08506 1.06333 1.20893 0.75141 0.80446 0.92783 1.90735 1.45629 1.54824 1.45985 1.21649 1.02110 0.99692 0.92056 1.18133 0.99786 0.89346 0.89002 0.93202 1.20604 0.91839 1.05677 1.34239 0.91154 1.24874 0.95307 0.97233 0.94381 1.69887 1.22508 1.22787 1.38639 0.86998 0.84639 0.79246 0.79555 1.20367 1.22176 1.17621 1.20749 0.91701 0.94954 0.96812 1.20991 0.98662 0.99978 0.92018 1.21061 0.97577 0.99272 0.96799 1.20864 0.95802 1.01366 0.98612 1.20960 0.99061 1.00882 0.93785 1.21157 0.98310 0.99900 0.95840 0.92539 0.92999 0.87646 0.90944 0.90176 0.88990 0.91096 0.90011 0.91755 0.75898 0.89515 0.91009 0.92919 0.86141 0.87204 0.87467 0.87425 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.45 101.05 1.16 1.12 16 2 O -0.14 -1.69 11.19 -29.60 -0.33 -2.02 16 3 N -0.48 -5.62 3.36 -67.08 -0.23 -5.84 16 4 C 0.07 0.54 9.44 59.85 0.57 1.10 16 5 C 0.52 7.15 7.15 -10.99 -0.08 7.07 16 6 O -0.51 -8.69 16.26 -12.57 -0.20 -8.90 16 7 C 0.14 1.82 2.15 -69.08 -0.15 1.67 16 8 H 0.12 1.60 6.31 -51.93 -0.33 1.27 16 9 C -0.16 -1.77 9.25 37.16 0.34 -1.42 16 10 N -0.73 -11.16 5.02 -54.93 -0.28 -11.43 16 11 C 0.52 9.79 7.54 -10.99 -0.08 9.71 16 12 O -0.50 -11.42 14.67 5.56 0.08 -11.34 16 13 C -0.11 -2.11 4.98 -27.88 -0.14 -2.25 16 14 C 0.06 1.26 1.17 -92.92 -0.11 1.15 16 15 H 0.05 1.17 5.07 -51.93 -0.26 0.91 16 16 C -0.49 -13.07 6.83 -34.44 -0.24 -13.31 16 17 H 0.07 2.06 8.06 -52.48 -0.42 1.64 16 18 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 19 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 20 Si 0.87 22.00 26.97 -169.99 -4.59 17.42 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.25 -5.87 4.33 56.52 0.24 -5.62 16 24 C -0.04 -0.86 4.51 -104.63 -0.47 -1.33 16 25 C -0.10 -1.93 8.93 -39.58 -0.35 -2.28 16 26 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 27 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 28 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 29 C -0.13 -2.59 8.56 -39.59 -0.34 -2.93 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.43 7.44 -51.93 -0.39 0.04 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.66 5.90 -51.93 -0.31 0.35 16 36 H 0.07 0.57 5.88 -51.93 -0.31 0.27 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 5.69 7.71 -40.82 -0.31 5.37 16 40 H 0.09 1.52 8.05 -51.93 -0.42 1.11 16 41 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.12 2.36 7.87 -52.49 -0.41 1.94 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 46 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 47 H 0.11 2.11 6.99 -52.48 -0.37 1.74 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -35.74 386.29 -7.17 -42.91 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.04 Total: 7.71 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.18 Total: -7.40 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.27 Total: -44.20 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.45 Total: -22.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.59 Total: 17.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.74 -7.17 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863630889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.866 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds