Wall clock time and date at job start Tue Mar 31 2020 18:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41593 * 114.00578 * 2 1 4 4 C 1.46506 * 119.99915 * 275.05862 * 3 2 1 5 5 C 1.34780 * 120.00223 * 95.04965 * 3 2 1 6 6 O 1.21276 * 119.99670 * 5.04594 * 5 3 2 7 7 C 1.50696 * 120.00143 * 185.03747 * 5 3 2 8 8 H 1.09004 * 109.46917 * 47.05310 * 7 5 3 9 9 C 1.53003 * 109.47244 * 287.05540 * 7 5 3 10 10 N 1.46506 * 109.47057 * 167.05354 * 7 5 3 11 11 C 1.34771 * 119.99578 * 204.72712 * 10 7 5 12 12 O 1.21274 * 120.00581 * 0.27289 * 11 10 7 13 13 C 1.50705 * 119.99699 * 180.27629 * 11 10 7 14 14 C 1.52997 * 109.47325 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.47298 * 305.66694 * 14 13 11 16 16 C 1.50706 * 109.46873 * 65.66620 * 14 13 11 17 17 H 1.08003 * 119.99531 * 30.80918 * 16 14 13 18 18 C 1.37872 * 120.00109 * 210.81071 * 16 14 13 19 19 N 1.31509 * 120.00338 * 181.59399 * 18 16 14 20 20 Si 1.86804 * 119.99660 * 1.59307 * 18 16 14 21 21 H 1.48500 * 109.47070 * 93.45973 * 20 18 16 22 22 H 1.48511 * 109.46987 * 213.45493 * 20 18 16 23 23 H 1.48494 * 109.47440 * 333.45440 * 20 18 16 24 24 C 1.50699 * 109.47397 * 185.66523 * 14 13 11 25 25 C 1.38235 * 119.99745 * 293.14464 * 24 14 13 26 26 C 1.38240 * 119.99680 * 179.78613 * 25 24 14 27 27 C 1.38233 * 119.99989 * 0.44042 * 26 25 24 28 28 C 1.38234 * 120.00166 * 359.81018 * 27 26 25 29 29 C 1.38231 * 120.00280 * 113.40995 * 24 14 13 30 30 H 1.09004 * 109.46632 * 305.00206 * 1 2 3 31 31 H 1.08996 * 109.47230 * 64.99454 * 1 2 3 32 32 H 1.08998 * 109.47561 * 185.00353 * 1 2 3 33 33 H 1.09003 * 109.46594 * 269.99633 * 4 3 2 34 34 H 1.08996 * 109.47250 * 29.99593 * 4 3 2 35 35 H 1.08999 * 109.47190 * 149.99824 * 4 3 2 36 36 H 1.09000 * 109.46997 * 63.31501 * 9 7 5 37 37 H 1.08995 * 109.47133 * 183.31705 * 9 7 5 38 38 H 1.09004 * 109.46939 * 303.31210 * 9 7 5 39 39 H 0.96998 * 119.99417 * 24.99930 * 10 7 5 40 40 H 1.08999 * 109.46975 * 299.99797 * 13 11 10 41 41 H 1.09008 * 109.47201 * 59.99706 * 13 11 10 42 42 H 0.97001 * 120.00548 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.00412 * 359.97438 * 25 24 14 44 44 H 1.07996 * 120.00072 * 180.27231 * 26 25 24 45 45 H 1.08003 * 119.99851 * 179.83671 * 27 26 25 46 46 H 1.08000 * 120.00525 * 180.02562 * 28 27 26 47 47 H 1.08006 * 119.99569 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0051 1.2935 0.0000 4 6 2.2009 2.0081 -1.2638 5 6 2.3731 1.8673 1.1627 6 8 2.2962 1.2416 2.1987 7 6 2.8803 3.2863 1.1752 8 1 2.2154 3.9151 0.5830 9 6 4.2887 3.3298 0.5789 10 7 2.9185 3.7790 2.5544 11 6 2.8472 5.1024 2.7993 12 8 2.7465 5.8850 1.8784 13 6 2.8928 5.6097 4.2177 14 6 2.7956 7.1365 4.2167 15 1 3.5717 7.5496 3.5725 16 6 1.4416 7.5533 3.7026 17 1 0.5826 6.9201 3.8687 18 6 1.2996 8.7428 3.0201 19 7 0.1127 9.1216 2.5988 20 14 2.7930 9.8165 2.6940 21 1 3.3557 9.4896 1.3591 22 1 2.3913 11.2459 2.7252 23 1 3.8191 9.5678 3.7382 24 6 2.9806 7.6527 5.6204 25 6 2.0318 7.3793 6.5879 26 6 2.2037 7.8490 7.8766 27 6 3.3197 8.5998 8.1956 28 6 4.2658 8.8776 7.2268 29 6 4.0961 8.4041 5.9392 30 1 -0.3633 0.5895 0.8418 31 1 -0.3633 0.4344 -0.9313 32 1 -0.3634 -1.0237 0.0896 33 1 3.1846 1.7689 -1.6678 34 1 1.4325 1.7054 -1.9752 35 1 2.1312 3.0817 -1.0887 36 1 4.2508 3.0191 -0.4652 37 1 4.6786 4.3457 0.6418 38 1 4.9398 2.6556 1.1353 39 1 2.9991 3.1530 3.2910 40 1 2.0573 5.1924 4.7798 41 1 3.8310 5.3060 4.6823 42 1 0.0128 9.9583 2.1184 43 1 1.1579 6.7962 6.3378 44 1 1.4648 7.6317 8.6336 45 1 3.4527 8.9690 9.2018 46 1 5.1380 9.4638 7.4760 47 1 4.8354 8.6210 5.1822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863630889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:57 Heat of formation + Delta-G solvation = -56.029994 kcal Electronic energy + Delta-G solvation = -29129.533124 eV Core-core repulsion = 25086.075658 eV Total energy + Delta-G solvation = -4043.457466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57748 -40.50532 -39.74091 -38.29543 -36.38802 -35.68914 -34.81362 -33.70236 -31.76363 -31.56026 -30.12217 -28.36533 -27.78152 -27.40380 -25.22050 -24.13424 -23.26639 -21.88888 -21.09292 -20.83741 -18.99009 -18.87622 -18.59398 -17.62723 -17.32675 -17.16172 -16.98900 -16.41727 -16.18274 -15.79136 -15.47892 -15.38651 -15.35510 -14.99206 -14.73923 -14.53673 -14.33954 -14.13590 -13.95706 -13.74227 -13.61239 -13.46702 -13.29840 -13.20208 -13.00363 -12.82483 -12.67465 -12.58315 -12.04084 -11.88570 -11.76008 -11.69001 -11.44079 -11.05640 -11.02078 -10.70950 -10.54191 -10.22708 -10.06657 -9.58736 -9.28142 -8.18198 -6.15896 0.57271 0.70596 0.75416 1.22696 1.37946 1.40868 1.48054 1.86510 2.23663 2.45453 3.05439 3.11061 3.26829 3.42618 3.88427 3.98416 4.11003 4.16512 4.25635 4.28258 4.31164 4.32693 4.33871 4.46968 4.49036 4.50931 4.59504 4.63549 4.66388 4.75440 4.79366 4.87358 4.88885 5.08008 5.16283 5.22625 5.36512 5.40821 5.43246 5.60900 5.71263 5.79036 5.84615 5.91149 6.05902 6.35892 6.39150 6.60921 6.82671 6.83299 7.43180 7.48188 8.98690 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003131 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.301446 B = 8940.500137 C = 9729.749611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.158 6.158 3 N -0.481 5.481 4 C 0.062 3.938 5 C 0.518 3.482 6 O -0.554 6.554 7 C 0.135 3.865 8 H 0.109 0.891 9 C -0.155 4.155 10 N -0.721 5.721 11 C 0.521 3.479 12 O -0.548 6.548 13 C -0.113 4.113 14 C 0.059 3.941 15 H 0.039 0.961 16 C -0.464 4.464 17 H 0.030 0.970 18 C 0.022 3.978 19 N -0.955 5.955 20 Si 0.919 3.081 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.219 1.219 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.126 4.126 29 C -0.149 4.149 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.258 0.742 43 H 0.106 0.894 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 -13.873 -2.184 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.161 6.161 3 N -0.261 5.261 4 C -0.077 4.077 5 C 0.307 3.693 6 O -0.431 6.431 7 C 0.026 3.974 8 H 0.126 0.874 9 C -0.213 4.213 10 N -0.377 5.377 11 C 0.309 3.691 12 O -0.423 6.423 13 C -0.153 4.153 14 C 0.040 3.960 15 H 0.057 0.943 16 C -0.502 4.502 17 H 0.048 0.952 18 C -0.174 4.174 19 N -0.597 5.597 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.228 1.228 23 H -0.142 1.142 24 C -0.065 4.065 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.158 4.158 28 C -0.144 4.144 29 C -0.167 4.167 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.124 0.876 44 H 0.154 0.846 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.269 -13.704 -2.408 16.185 hybrid contribution -0.615 0.400 -0.372 0.822 sum 7.654 -13.304 -2.779 15.598 Atomic orbital electron populations 1.23518 0.80013 1.05268 1.01531 1.90622 1.21786 1.06842 1.96824 1.49931 1.58122 1.10115 1.07922 1.22617 1.05024 0.96722 0.83377 1.21264 0.77040 0.88325 0.82682 1.90678 1.55039 1.64329 1.33062 1.20768 1.00746 0.89506 0.86349 0.87361 1.22191 0.92723 1.03764 1.02660 1.45868 1.76608 1.07457 1.07812 1.20944 0.74515 0.81186 0.92454 1.90716 1.48260 1.56194 1.47145 1.21597 1.04099 0.97303 0.92322 1.18000 0.96268 0.91753 0.89982 0.94317 1.20789 0.92902 1.04037 1.32479 0.95158 1.25627 0.97579 0.99083 0.95098 1.70039 1.24748 1.23605 1.41296 0.86183 0.82454 0.77073 0.79804 1.21184 1.22752 1.14183 1.20508 0.93432 0.96653 0.95903 1.21014 0.98279 1.01052 0.93371 1.21380 0.98600 0.98535 0.96131 1.21328 0.94551 0.99679 1.00228 1.21348 1.00178 1.00125 0.92709 1.21288 0.97994 1.00032 0.97350 0.94535 0.90969 0.85282 0.88651 0.88164 0.88730 0.88008 0.91389 0.91133 0.75053 0.89150 0.87516 0.93363 0.87616 0.84637 0.83709 0.84126 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.45 113.37 1.30 1.20 16 2 O -0.16 -3.70 11.19 -21.43 -0.24 -3.94 16 3 N -0.48 -10.66 3.36 -484.52 -1.63 -12.29 16 4 C 0.06 0.80 9.44 127.77 1.21 2.01 16 5 C 0.52 14.19 7.15 87.66 0.63 14.82 16 6 O -0.55 -18.90 16.26 14.32 0.23 -18.67 16 7 C 0.14 3.58 2.15 44.24 0.10 3.67 16 8 H 0.11 3.06 6.31 -2.38 -0.02 3.05 16 9 C -0.16 -3.18 9.25 71.98 0.67 -2.52 16 10 N -0.72 -22.13 5.02 -446.09 -2.24 -24.37 16 11 C 0.52 19.99 7.54 87.66 0.66 20.65 16 12 O -0.55 -25.80 14.67 -3.01 -0.04 -25.85 16 13 C -0.11 -4.17 4.98 29.85 0.15 -4.02 16 14 C 0.06 2.66 1.17 -12.29 -0.01 2.65 16 15 H 0.04 1.82 5.07 -2.39 -0.01 1.81 16 16 C -0.46 -25.98 6.83 25.60 0.17 -25.81 16 17 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 18 C 0.02 1.32 5.47 84.65 0.46 1.78 16 19 N -0.96 -61.70 13.96 21.44 0.30 -61.40 16 20 Si 0.92 46.36 26.97 68.60 1.85 48.21 16 21 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 23 H -0.22 -9.76 4.33 99.48 0.43 -9.33 16 24 C -0.06 -2.61 4.51 -19.87 -0.09 -2.70 16 25 C -0.12 -4.58 8.93 22.27 0.20 -4.38 16 26 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 27 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 28 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 29 C -0.15 -5.38 8.56 22.27 0.19 -5.19 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 0.84 7.44 -2.39 -0.02 0.82 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.22 5.90 -2.39 -0.01 1.20 16 36 H 0.10 1.42 5.88 -2.39 -0.01 1.41 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.41 11.58 7.71 -92.71 -0.72 10.86 16 40 H 0.09 3.25 8.05 -2.39 -0.02 3.23 16 41 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 42 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.11 4.26 7.87 -2.91 -0.02 4.24 16 44 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 47 H 0.11 4.01 6.99 -2.91 -0.02 3.99 16 Total: -1.00 -82.07 386.29 4.52 -77.54 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.01 Total: 29.73 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 6.30 Total: -8.98 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -3.57 Total: -98.06 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.05 Total: -48.46 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.85 Total: 48.21 kcal Total: -82.07 4.52 -77.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863630889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.512 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds