Wall clock time and date at job start Tue Mar 31 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41601 * 114.00398 * 2 1 4 4 C 1.46500 * 120.00143 * 270.00441 * 3 2 1 5 5 C 1.34772 * 119.99910 * 90.00107 * 3 2 1 6 6 O 1.21283 * 120.00207 * 180.02562 * 5 3 2 7 7 C 1.50703 * 119.99895 * 0.02562 * 5 3 2 8 8 H 1.09001 * 109.47099 * 299.99218 * 7 5 3 9 9 C 1.52995 * 109.47387 * 59.99597 * 7 5 3 10 10 N 1.46507 * 109.46931 * 180.02562 * 7 5 3 11 11 C 1.34772 * 119.99933 * 154.99989 * 10 7 5 12 12 O 1.21286 * 120.00014 * 359.97438 * 11 10 7 13 13 C 1.50697 * 120.00111 * 179.97438 * 11 10 7 14 14 C 1.52996 * 109.47448 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47248 * 55.00215 * 14 13 11 16 16 C 1.50700 * 109.47418 * 295.00027 * 14 13 11 17 17 H 1.08000 * 119.99531 * 325.12875 * 16 14 13 18 18 C 1.37871 * 120.00208 * 145.12160 * 16 14 13 19 19 N 1.31509 * 120.00214 * 184.98866 * 18 16 14 20 20 Si 1.86802 * 119.99973 * 4.99327 * 18 16 14 21 21 H 1.48504 * 109.47071 * 84.72759 * 20 18 16 22 22 H 1.48494 * 109.47063 * 204.72706 * 20 18 16 23 23 H 1.48498 * 109.46943 * 324.72485 * 20 18 16 24 24 C 1.50701 * 109.47174 * 174.99597 * 14 13 11 25 25 C 1.38234 * 119.99727 * 64.69821 * 24 14 13 26 26 C 1.38240 * 120.00038 * 179.78467 * 25 24 14 27 27 C 1.38229 * 119.99766 * 0.44269 * 26 25 24 28 28 C 1.38239 * 120.00296 * 359.80625 * 27 26 25 29 29 C 1.38228 * 120.00272 * 244.96296 * 24 14 13 30 30 H 1.09002 * 109.47032 * 59.99345 * 1 2 3 31 31 H 1.08993 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46469 * 299.99783 * 1 2 3 33 33 H 1.08994 * 109.47047 * 269.99846 * 4 3 2 34 34 H 1.09001 * 109.47235 * 30.00050 * 4 3 2 35 35 H 1.09001 * 109.47033 * 149.99806 * 4 3 2 36 36 H 1.08992 * 109.47178 * 300.00041 * 9 7 5 37 37 H 1.09001 * 109.46978 * 179.97438 * 9 7 5 38 38 H 1.09004 * 109.47061 * 60.00201 * 9 7 5 39 39 H 0.97003 * 119.99559 * 334.99143 * 10 7 5 40 40 H 1.09003 * 109.46954 * 300.00120 * 13 11 10 41 41 H 1.08999 * 109.47202 * 59.99374 * 13 11 10 42 42 H 0.96998 * 120.00849 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00250 * 359.97438 * 25 24 14 44 44 H 1.07997 * 119.99694 * 180.26405 * 26 25 24 45 45 H 1.07997 * 119.99893 * 179.83520 * 27 26 25 46 46 H 1.07998 * 120.00412 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.00464 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2792 1.9091 1.1672 6 8 2.7721 3.0172 1.1672 7 6 1.9732 1.2205 2.4723 8 1 0.9053 1.0098 2.5303 9 6 2.7569 -0.0910 2.5530 10 7 2.3598 2.0905 3.5858 11 6 1.7604 1.9562 4.7854 12 8 0.9005 1.1154 4.9430 13 6 2.1585 2.8507 5.9310 14 6 1.3319 2.4936 7.1680 15 1 1.4449 1.4316 7.3863 16 6 -0.1202 2.8013 6.9080 17 1 -0.3914 3.6517 6.3000 18 6 -1.1024 1.9972 7.4460 19 7 -2.3642 2.2062 7.1400 20 14 -0.6409 0.6107 8.6098 21 1 -0.5131 1.1446 9.9896 22 1 -1.6962 -0.4335 8.5788 23 1 0.6535 0.0190 8.1860 24 6 1.8139 3.3022 8.3448 25 6 1.6787 4.6779 8.3400 26 6 2.1168 5.4193 9.4214 27 6 2.6983 4.7858 10.5036 28 6 2.8382 3.4105 10.5063 29 6 2.3962 2.6688 9.4267 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 3.3156 1.7107 -1.5834 34 1 1.5939 1.6337 -2.0283 35 1 2.2210 3.0418 -1.1383 36 1 2.4689 -0.7380 1.7246 37 1 2.5359 -0.5888 3.4972 38 1 3.8248 0.1198 2.4951 39 1 3.0473 2.7630 3.4597 40 1 3.2175 2.7124 6.1489 41 1 1.9760 3.8906 5.6604 42 1 -3.0553 1.6407 7.5187 43 1 1.2281 5.1733 7.4926 44 1 2.0073 6.4937 9.4193 45 1 3.0430 5.3653 11.3473 46 1 3.2922 2.9155 11.3520 47 1 2.5053 1.5943 9.4290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863709954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:04 Heat of formation + Delta-G solvation = -32.777565 kcal Electronic energy + Delta-G solvation = -29280.025518 eV Core-core repulsion = 25237.576353 eV Total energy + Delta-G solvation = -4042.449165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41371 -39.05146 -38.31172 -37.59936 -34.88055 -33.89778 -33.28641 -31.70699 -30.82777 -30.19019 -28.75815 -27.63842 -26.59923 -25.93398 -23.72034 -22.50484 -21.83415 -20.64435 -20.04336 -19.31342 -17.97389 -17.16685 -16.92742 -16.39357 -16.37905 -15.85799 -15.43133 -14.97636 -14.63298 -14.53487 -14.46659 -14.07602 -13.96923 -13.79468 -13.38582 -13.05459 -12.97731 -12.75040 -12.61993 -12.52003 -12.37842 -12.20667 -12.03917 -11.93403 -11.79619 -11.56775 -11.09233 -10.79088 -10.77919 -10.49196 -10.36224 -9.98728 -9.84413 -9.59287 -9.35174 -9.07769 -8.98179 -8.67786 -8.41343 -8.21533 -7.80449 -5.96617 -3.93063 1.56761 2.09931 2.15623 2.25080 3.34720 3.42863 3.46709 3.47995 3.52533 3.86783 4.52959 4.58247 4.70497 4.94756 4.97295 4.98859 5.10774 5.16450 5.23046 5.31445 5.40635 5.42023 5.52615 5.56597 5.62309 5.70039 5.80998 5.90486 5.97310 6.03489 6.05789 6.11374 6.25391 6.26022 6.34954 6.63434 6.70831 6.76352 6.84606 7.05290 7.09922 7.14981 7.27460 7.60161 7.73053 7.74196 7.84207 8.05612 8.55266 8.99325 9.03300 9.68060 11.16640 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.003282 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.701214 B = 8529.528714 C = 9563.602865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.139 6.139 3 N -0.481 5.481 4 C 0.087 3.913 5 C 0.525 3.475 6 O -0.517 6.517 7 C 0.134 3.866 8 H 0.112 0.888 9 C -0.157 4.157 10 N -0.734 5.734 11 C 0.519 3.481 12 O -0.499 6.499 13 C -0.114 4.114 14 C 0.046 3.954 15 H 0.058 0.942 16 C -0.484 4.484 17 H 0.071 0.929 18 C 0.087 3.913 19 N -0.899 5.899 20 Si 0.870 3.130 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.261 1.261 24 C -0.039 4.039 25 C -0.101 4.101 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.125 4.125 29 C -0.140 4.140 30 H 0.054 0.946 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.261 0.739 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -1.790 -12.082 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.143 6.143 3 N -0.262 5.262 4 C -0.054 4.054 5 C 0.314 3.686 6 O -0.393 6.393 7 C 0.025 3.975 8 H 0.129 0.871 9 C -0.216 4.216 10 N -0.391 5.391 11 C 0.306 3.694 12 O -0.371 6.371 13 C -0.154 4.154 14 C 0.027 3.973 15 H 0.076 0.924 16 C -0.521 4.521 17 H 0.089 0.911 18 C -0.115 4.115 19 N -0.537 5.537 20 Si 0.699 3.301 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.186 1.186 24 C -0.040 4.040 25 C -0.119 4.119 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.143 4.143 29 C -0.159 4.159 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.417 -2.052 -11.921 15.963 hybrid contribution -0.123 -0.436 0.485 0.664 sum 10.294 -2.488 -11.436 15.586 Atomic orbital electron populations 1.23489 0.81119 1.04459 1.01930 1.90641 1.20539 1.06369 1.96716 1.49917 1.59084 1.10546 1.06603 1.21903 1.01618 0.98101 0.83750 1.21074 0.77342 0.85108 0.85094 1.90737 1.43998 1.18634 1.85897 1.20548 1.02423 0.90914 0.83611 0.87078 1.22167 0.99755 0.95606 1.04052 1.46022 1.43681 1.39370 1.10037 1.20850 0.80924 0.84802 0.82830 1.90735 1.29219 1.34711 1.82408 1.21632 0.99774 0.99385 0.94616 1.18312 0.95866 0.96066 0.87072 0.92369 1.20599 0.86870 1.13266 1.31384 0.91099 1.24853 0.94740 0.96414 0.95531 1.69883 0.99867 1.39928 1.44034 0.86967 0.78557 0.82940 0.81651 1.20262 1.21866 1.18603 1.20784 0.91688 0.94399 0.97138 1.20987 0.98694 0.93937 0.98320 1.21067 0.99748 0.99145 0.94466 1.20862 1.02748 0.94582 0.98591 1.20962 1.01061 0.94209 0.98035 1.21078 1.00659 0.99328 0.94795 0.92702 0.87039 0.92105 0.91532 0.90492 0.89362 0.90187 0.90742 0.92436 0.76211 0.91180 0.89662 0.92905 0.86165 0.87149 0.87401 0.87337 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.44 101.05 1.16 1.05 16 2 O -0.14 -1.41 8.79 -11.47 -0.10 -1.51 16 3 N -0.48 -5.36 3.34 -67.08 -0.22 -5.58 16 4 C 0.09 0.71 10.82 59.85 0.65 1.36 16 5 C 0.52 7.21 7.17 -10.99 -0.08 7.13 16 6 O -0.52 -8.14 15.42 5.55 0.09 -8.05 16 7 C 0.13 1.97 2.57 -69.08 -0.18 1.79 16 8 H 0.11 1.80 6.56 -51.93 -0.34 1.46 16 9 C -0.16 -2.01 9.33 37.16 0.35 -1.67 16 10 N -0.73 -11.84 4.95 -54.93 -0.27 -12.12 16 11 C 0.52 10.32 7.54 -10.99 -0.08 10.23 16 12 O -0.50 -12.05 14.65 5.55 0.08 -11.97 16 13 C -0.11 -2.17 4.96 -27.89 -0.14 -2.31 16 14 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16 15 H 0.06 1.43 4.70 -51.93 -0.24 1.19 16 16 C -0.48 -13.29 6.87 -34.44 -0.24 -13.53 16 17 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 18 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.87 22.68 27.15 -169.99 -4.62 18.07 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 23 H -0.26 -6.54 6.06 56.52 0.34 -6.20 16 24 C -0.04 -0.83 4.55 -104.63 -0.48 -1.31 16 25 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 26 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 27 C -0.15 -2.46 10.05 -39.58 -0.40 -2.85 16 28 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 29 C -0.14 -2.76 9.43 -39.58 -0.37 -3.13 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.61 7.13 -51.93 -0.37 0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.77 7.42 -51.93 -0.39 0.39 16 36 H 0.08 0.91 6.03 -51.93 -0.31 0.60 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 5.83 7.79 -40.82 -0.32 5.51 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.54 7.86 -51.93 -0.41 1.14 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.12 2.34 7.80 -52.48 -0.41 1.93 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.11 2.07 7.95 -52.49 -0.42 1.65 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -34.88 389.68 -6.62 -41.50 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.05 Total: 8.32 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.17 Total: -7.30 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.28 Total: -44.93 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.07 Total: -21.53 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.62 Total: 18.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.88 -6.62 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863709954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.720 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds