Wall clock time and date at job start Tue Mar 31 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41601 * 114.00398 * 2 1 4 4 C 1.46500 * 120.00143 * 270.00441 * 3 2 1 5 5 C 1.34772 * 119.99910 * 90.00107 * 3 2 1 6 6 O 1.21283 * 120.00207 * 180.02562 * 5 3 2 7 7 C 1.50703 * 119.99895 * 0.02562 * 5 3 2 8 8 H 1.09001 * 109.47099 * 299.99218 * 7 5 3 9 9 C 1.52995 * 109.47387 * 59.99597 * 7 5 3 10 10 N 1.46507 * 109.46931 * 180.02562 * 7 5 3 11 11 C 1.34772 * 119.99933 * 154.99989 * 10 7 5 12 12 O 1.21286 * 120.00014 * 359.97438 * 11 10 7 13 13 C 1.50697 * 120.00111 * 179.97438 * 11 10 7 14 14 C 1.52996 * 109.47448 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47248 * 55.00215 * 14 13 11 16 16 C 1.50700 * 109.47418 * 295.00027 * 14 13 11 17 17 H 1.08000 * 119.99531 * 325.12875 * 16 14 13 18 18 C 1.37871 * 120.00208 * 145.12160 * 16 14 13 19 19 N 1.31509 * 120.00214 * 184.98866 * 18 16 14 20 20 Si 1.86802 * 119.99973 * 4.99327 * 18 16 14 21 21 H 1.48504 * 109.47071 * 84.72759 * 20 18 16 22 22 H 1.48494 * 109.47063 * 204.72706 * 20 18 16 23 23 H 1.48498 * 109.46943 * 324.72485 * 20 18 16 24 24 C 1.50701 * 109.47174 * 174.99597 * 14 13 11 25 25 C 1.38234 * 119.99727 * 64.69821 * 24 14 13 26 26 C 1.38240 * 120.00038 * 179.78467 * 25 24 14 27 27 C 1.38229 * 119.99766 * 0.44269 * 26 25 24 28 28 C 1.38239 * 120.00296 * 359.80625 * 27 26 25 29 29 C 1.38228 * 120.00272 * 244.96296 * 24 14 13 30 30 H 1.09002 * 109.47032 * 59.99345 * 1 2 3 31 31 H 1.08993 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46469 * 299.99783 * 1 2 3 33 33 H 1.08994 * 109.47047 * 269.99846 * 4 3 2 34 34 H 1.09001 * 109.47235 * 30.00050 * 4 3 2 35 35 H 1.09001 * 109.47033 * 149.99806 * 4 3 2 36 36 H 1.08992 * 109.47178 * 300.00041 * 9 7 5 37 37 H 1.09001 * 109.46978 * 179.97438 * 9 7 5 38 38 H 1.09004 * 109.47061 * 60.00201 * 9 7 5 39 39 H 0.97003 * 119.99559 * 334.99143 * 10 7 5 40 40 H 1.09003 * 109.46954 * 300.00120 * 13 11 10 41 41 H 1.08999 * 109.47202 * 59.99374 * 13 11 10 42 42 H 0.96998 * 120.00849 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00250 * 359.97438 * 25 24 14 44 44 H 1.07997 * 119.99694 * 180.26405 * 26 25 24 45 45 H 1.07997 * 119.99893 * 179.83520 * 27 26 25 46 46 H 1.07998 * 120.00412 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.00464 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2792 1.9091 1.1672 6 8 2.7721 3.0172 1.1672 7 6 1.9732 1.2205 2.4723 8 1 0.9053 1.0098 2.5303 9 6 2.7569 -0.0910 2.5530 10 7 2.3598 2.0905 3.5858 11 6 1.7604 1.9562 4.7854 12 8 0.9005 1.1154 4.9430 13 6 2.1585 2.8507 5.9310 14 6 1.3319 2.4936 7.1680 15 1 1.4449 1.4316 7.3863 16 6 -0.1202 2.8013 6.9080 17 1 -0.3914 3.6517 6.3000 18 6 -1.1024 1.9972 7.4460 19 7 -2.3642 2.2062 7.1400 20 14 -0.6409 0.6107 8.6098 21 1 -0.5131 1.1446 9.9896 22 1 -1.6962 -0.4335 8.5788 23 1 0.6535 0.0190 8.1860 24 6 1.8139 3.3022 8.3448 25 6 1.6787 4.6779 8.3400 26 6 2.1168 5.4193 9.4214 27 6 2.6983 4.7858 10.5036 28 6 2.8382 3.4105 10.5063 29 6 2.3962 2.6688 9.4267 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 3.3156 1.7107 -1.5834 34 1 1.5939 1.6337 -2.0283 35 1 2.2210 3.0418 -1.1383 36 1 2.4689 -0.7380 1.7246 37 1 2.5359 -0.5888 3.4972 38 1 3.8248 0.1198 2.4951 39 1 3.0473 2.7630 3.4597 40 1 3.2175 2.7124 6.1489 41 1 1.9760 3.8906 5.6604 42 1 -3.0553 1.6407 7.5187 43 1 1.2281 5.1733 7.4926 44 1 2.0073 6.4937 9.4193 45 1 3.0430 5.3653 11.3473 46 1 3.2922 2.9155 11.3520 47 1 2.5053 1.5943 9.4290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863709954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:03 Heat of formation + Delta-G solvation = -56.337579 kcal Electronic energy + Delta-G solvation = -29281.047157 eV Core-core repulsion = 25237.576353 eV Total energy + Delta-G solvation = -4043.470804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57674 -40.52234 -39.74162 -38.54169 -36.33226 -35.60156 -34.16709 -33.74397 -32.16947 -31.59337 -30.20384 -28.42093 -27.79256 -27.44594 -25.04863 -24.02016 -23.26017 -21.81398 -21.37387 -20.89493 -19.18528 -19.00379 -18.25903 -17.76569 -17.29285 -17.16248 -16.70507 -16.37455 -16.17000 -15.99337 -15.52816 -15.37725 -15.36789 -15.12314 -14.78483 -14.42978 -14.30985 -14.11208 -13.92568 -13.73736 -13.67575 -13.47042 -13.34082 -13.27194 -12.94352 -12.87939 -12.75681 -12.60745 -12.05106 -11.88227 -11.81112 -11.67205 -11.46835 -11.07932 -11.00529 -10.76093 -10.51725 -10.25743 -10.08732 -9.62891 -9.30806 -8.20773 -6.17285 0.67600 0.70227 0.73638 1.17019 1.31709 1.34736 1.40875 1.86229 2.16864 2.40839 2.75815 3.08424 3.22906 3.78905 3.95109 4.04612 4.11497 4.14792 4.30278 4.31131 4.31706 4.32149 4.37440 4.45255 4.49501 4.52053 4.63828 4.71336 4.72283 4.77017 4.79523 4.85028 4.87258 5.07760 5.13429 5.20805 5.21393 5.38076 5.40497 5.44737 5.70274 5.76474 5.82579 6.02774 6.14040 6.33478 6.37169 6.63114 6.71998 6.81299 7.45500 7.46818 8.96598 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.003282 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.701214 B = 8529.528714 C = 9563.602865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 O -0.142 6.142 3 N -0.477 5.477 4 C 0.082 3.918 5 C 0.526 3.474 6 O -0.542 6.542 7 C 0.129 3.871 8 H 0.092 0.908 9 C -0.146 4.146 10 N -0.719 5.719 11 C 0.518 3.482 12 O -0.550 6.550 13 C -0.111 4.111 14 C 0.049 3.951 15 H 0.042 0.958 16 C -0.463 4.463 17 H 0.032 0.968 18 C 0.026 3.974 19 N -0.953 5.953 20 Si 0.921 3.079 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.248 1.248 24 C -0.064 4.064 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.123 4.123 29 C -0.156 4.156 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.258 0.742 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 -1.659 -11.586 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.146 6.146 3 N -0.256 5.256 4 C -0.057 4.057 5 C 0.315 3.685 6 O -0.420 6.420 7 C 0.020 3.980 8 H 0.109 0.891 9 C -0.204 4.204 10 N -0.376 5.376 11 C 0.305 3.695 12 O -0.426 6.426 13 C -0.151 4.151 14 C 0.030 3.970 15 H 0.060 0.940 16 C -0.501 4.501 17 H 0.051 0.949 18 C -0.170 4.170 19 N -0.594 5.594 20 Si 0.748 3.252 21 H -0.192 1.192 22 H -0.225 1.225 23 H -0.173 1.173 24 C -0.064 4.064 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.158 4.158 28 C -0.141 4.141 29 C -0.174 4.174 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.157 0.843 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.154 -1.915 -11.475 17.561 hybrid contribution -0.882 -0.381 0.243 0.991 sum 12.272 -2.296 -11.232 16.794 Atomic orbital electron populations 1.23646 0.79991 1.05949 1.01662 1.90627 1.21630 1.05596 1.96728 1.49912 1.58126 1.10771 1.06745 1.22149 1.03272 0.97537 0.82761 1.20744 0.77525 0.84817 0.85458 1.90723 1.45461 1.19442 1.86390 1.20657 1.01682 0.91733 0.83918 0.89050 1.22073 1.00153 0.94492 1.03722 1.45823 1.42950 1.39325 1.09458 1.21009 0.80329 0.84178 0.83948 1.90716 1.31568 1.36921 1.83384 1.21581 1.01191 0.99419 0.92915 1.18155 0.93580 0.95506 0.89749 0.94028 1.20787 0.89556 1.10908 1.28873 0.94927 1.25573 0.94695 0.99100 0.97647 1.70029 1.00980 1.41790 1.46613 0.86139 0.78488 0.80362 0.80203 1.19222 1.22476 1.17276 1.20514 0.94252 0.94864 0.96820 1.21024 0.99742 0.93714 0.99346 1.21405 0.98603 1.00584 0.93678 1.21343 1.00816 0.94609 0.99040 1.21352 1.00000 0.94740 0.97980 1.21224 1.01292 0.99747 0.95178 0.90913 0.84697 0.94363 0.90136 0.87852 0.90026 0.88629 0.92492 0.91139 0.75005 0.87601 0.88984 0.93291 0.87355 0.84339 0.83523 0.84067 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.24 11.44 113.37 1.30 1.06 16 2 O -0.14 -2.69 8.79 -38.79 -0.34 -3.03 16 3 N -0.48 -10.06 3.34 -484.53 -1.62 -11.68 16 4 C 0.08 1.19 10.82 127.77 1.38 2.57 16 5 C 0.53 14.28 7.17 87.66 0.63 14.91 16 6 O -0.54 -16.91 15.42 -3.04 -0.05 -16.96 16 7 C 0.13 3.84 2.57 44.24 0.11 3.95 16 8 H 0.09 3.12 6.56 -2.39 -0.02 3.11 16 9 C -0.15 -3.69 9.33 71.98 0.67 -3.02 16 10 N -0.72 -23.51 4.95 -446.09 -2.21 -25.72 16 11 C 0.52 21.13 7.54 87.66 0.66 21.79 16 12 O -0.55 -27.74 14.65 -3.05 -0.04 -27.78 16 13 C -0.11 -4.26 4.96 29.85 0.15 -4.11 16 14 C 0.05 2.30 1.21 -12.29 -0.01 2.29 16 15 H 0.04 2.07 4.70 -2.38 -0.01 2.06 16 16 C -0.46 -26.57 6.87 25.60 0.18 -26.39 16 17 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 18 C 0.03 1.60 5.47 84.65 0.46 2.06 16 19 N -0.95 -62.36 13.96 21.44 0.30 -62.06 16 20 Si 0.92 48.04 27.15 68.60 1.86 49.90 16 21 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.25 -12.29 6.06 99.48 0.60 -11.68 16 24 C -0.06 -2.66 4.55 -19.87 -0.09 -2.75 16 25 C -0.12 -4.63 8.87 22.27 0.20 -4.43 16 26 C -0.12 -3.93 10.05 22.27 0.22 -3.70 16 27 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 28 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 29 C -0.16 -5.83 9.43 22.27 0.21 -5.62 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 0.78 7.13 -2.39 -0.02 0.77 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.33 7.42 -2.39 -0.02 1.31 16 36 H 0.10 2.09 6.03 -2.39 -0.01 2.08 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.41 11.83 7.79 -92.71 -0.72 11.11 16 40 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.39 7.86 -2.39 -0.02 3.37 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 43 H 0.11 4.31 7.80 -2.91 -0.02 4.29 16 44 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 45 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 46 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 47 H 0.11 3.99 7.95 -2.91 -0.02 3.97 16 Total: -1.00 -79.80 389.68 4.57 -75.23 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.15 Total: 30.80 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 6.51 Total: -8.70 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.53 Total: -99.46 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.43 Total: -47.77 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.86 Total: 49.90 kcal Total: -79.80 4.57 -75.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863709954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.896 kcal (2) G-P(sol) polarization free energy of solvation -79.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds