Wall clock time and date at job start Tue Mar 31 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41595 * 114.00337 * 2 1 4 4 C 1.46498 * 120.00352 * 269.99871 * 3 2 1 5 5 C 1.34781 * 119.99485 * 89.99906 * 3 2 1 6 6 O 1.21285 * 119.99661 * 180.02562 * 5 3 2 7 7 C 1.50696 * 120.00459 * 359.97438 * 5 3 2 8 8 H 1.08995 * 109.47275 * 300.00244 * 7 5 3 9 9 C 1.53004 * 109.46729 * 59.99875 * 7 5 3 10 10 N 1.46496 * 109.47331 * 180.02562 * 7 5 3 11 11 C 1.34771 * 120.00262 * 155.00428 * 10 7 5 12 12 O 1.21289 * 119.99887 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00307 * 180.02562 * 11 10 7 14 14 C 1.53004 * 109.47276 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47026 * 304.99946 * 14 13 11 16 16 C 1.50698 * 109.47097 * 64.99791 * 14 13 11 17 17 H 1.08004 * 119.99892 * 234.68174 * 16 14 13 18 18 C 1.37876 * 120.00362 * 54.68172 * 16 14 13 19 19 N 1.31514 * 119.99826 * 4.86966 * 18 16 14 20 20 Si 1.86803 * 120.00217 * 184.87441 * 18 16 14 21 21 H 1.48497 * 109.46957 * 59.99657 * 20 18 16 22 22 H 1.48499 * 109.46974 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46918 * 299.99615 * 20 18 16 24 24 C 1.50702 * 109.47237 * 184.99683 * 14 13 11 25 25 C 1.38233 * 119.99815 * 151.48548 * 24 14 13 26 26 C 1.38237 * 119.99648 * 179.79327 * 25 24 14 27 27 C 1.38229 * 120.00151 * 0.43380 * 26 25 24 28 28 C 1.38237 * 119.99941 * 359.82041 * 27 26 25 29 29 C 1.38229 * 120.00047 * 359.97238 * 28 27 26 30 30 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47599 * 299.99931 * 1 2 3 32 32 H 1.09004 * 109.47190 * 59.99943 * 1 2 3 33 33 H 1.08999 * 109.47370 * 269.99860 * 4 3 2 34 34 H 1.08998 * 109.46832 * 30.00308 * 4 3 2 35 35 H 1.09000 * 109.47102 * 149.99367 * 4 3 2 36 36 H 1.08993 * 109.47604 * 299.99956 * 9 7 5 37 37 H 1.09004 * 109.47094 * 60.00356 * 9 7 5 38 38 H 1.09004 * 109.46776 * 179.97438 * 9 7 5 39 39 H 0.97003 * 119.99922 * 334.99665 * 10 7 5 40 40 H 1.08994 * 109.47473 * 59.99553 * 13 11 10 41 41 H 1.09002 * 109.46812 * 299.99323 * 13 11 10 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00199 * 359.97438 * 25 24 14 44 44 H 1.08010 * 119.99704 * 180.27426 * 26 25 24 45 45 H 1.07994 * 120.00083 * 179.83610 * 27 26 25 46 46 H 1.08001 * 120.00257 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00160 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3030 1.9627 -1.2687 5 6 2.2790 1.9090 1.1673 6 8 2.7720 3.0172 1.1673 7 6 1.9720 1.2210 2.4723 8 1 0.9040 1.0109 2.5299 9 6 2.7549 -0.0911 2.5536 10 7 2.3587 2.0908 3.5859 11 6 1.7588 1.9571 4.7853 12 8 0.8982 1.1170 4.9426 13 6 2.1562 2.8523 5.9306 14 6 1.3291 2.4957 7.1674 15 1 0.2682 2.5484 6.9225 16 6 1.6724 1.0985 7.6157 17 1 0.8912 0.3622 7.7343 18 6 2.9837 0.7601 7.8743 19 7 3.9225 1.6797 7.8230 20 14 3.4270 -1.0045 8.2975 21 1 3.0417 -1.8948 7.1732 22 1 4.8903 -1.1053 8.5291 23 1 2.7013 -1.4161 9.5260 24 6 1.6377 3.4690 8.2758 25 6 0.6795 3.7565 9.2298 26 6 0.9641 4.6460 10.2490 27 6 2.2037 5.2547 10.3091 28 6 3.1601 4.9711 9.3520 29 6 2.8770 4.0785 8.3353 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 3.3157 1.7107 -1.5833 34 1 1.5940 1.6336 -2.0283 35 1 2.2209 3.0418 -1.1383 36 1 2.4667 -0.7381 1.7252 37 1 3.8229 0.1189 2.4961 38 1 2.5331 -0.5886 3.4978 39 1 3.0468 2.7629 3.4600 40 1 1.9738 3.8921 5.6593 41 1 3.2151 2.7141 6.1491 42 1 4.8451 1.4416 8.0046 43 1 -0.2904 3.2840 9.1806 44 1 0.2170 4.8673 10.9970 45 1 2.4251 5.9516 11.1038 46 1 4.1285 5.4471 9.3987 47 1 3.6243 3.8566 7.5879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863709956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:07 Heat of formation + Delta-G solvation = -29.353350 kcal Electronic energy + Delta-G solvation = -29545.239505 eV Core-core repulsion = 25502.938825 eV Total energy + Delta-G solvation = -4042.300680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35603 -38.84793 -37.99323 -37.56691 -34.79439 -33.95853 -33.27342 -31.14673 -30.61187 -29.76404 -28.25844 -27.61940 -26.58391 -25.82150 -23.71186 -22.41800 -21.39147 -20.55041 -19.93216 -19.29677 -17.92971 -17.12171 -16.46288 -16.36291 -15.89037 -15.52378 -15.37402 -14.92171 -14.78952 -14.56245 -14.10226 -13.96810 -13.76327 -13.64615 -13.35016 -12.97287 -12.86398 -12.74785 -12.34745 -12.27936 -12.18781 -11.97481 -11.64449 -11.57658 -11.42646 -11.29042 -10.87358 -10.79413 -10.76069 -10.39150 -10.13707 -9.96651 -9.88264 -9.33428 -9.26632 -9.16302 -8.79987 -8.54287 -8.36868 -7.76821 -7.40425 -5.93882 -4.03908 1.58062 2.27844 2.53399 2.62063 3.34896 3.37993 3.43761 3.49252 3.68312 4.01403 4.46068 4.72777 4.93114 4.93892 4.95525 5.01316 5.12161 5.19901 5.28524 5.31655 5.39230 5.41754 5.81437 5.84552 5.94105 5.95954 6.02166 6.05008 6.15254 6.40823 6.44471 6.49757 6.62313 6.75424 6.81480 6.88575 7.14518 7.17396 7.19811 7.30298 7.51233 7.57821 7.73253 7.76591 7.96597 8.11641 8.21928 8.26690 8.38412 8.92307 9.18843 9.59093 11.00188 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003328 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.173105 B = 8411.380949 C = 9359.150510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.137 6.137 3 N -0.482 5.482 4 C 0.087 3.913 5 C 0.524 3.476 6 O -0.516 6.516 7 C 0.136 3.864 8 H 0.107 0.893 9 C -0.159 4.159 10 N -0.734 5.734 11 C 0.529 3.471 12 O -0.528 6.528 13 C -0.137 4.137 14 C 0.089 3.911 15 H 0.037 0.963 16 C -0.471 4.471 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.279 1.279 24 C -0.027 4.027 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.403 0.597 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.261 0.739 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 1.376 -14.818 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.141 6.141 3 N -0.262 5.262 4 C -0.054 4.054 5 C 0.313 3.687 6 O -0.391 6.391 7 C 0.027 3.973 8 H 0.124 0.876 9 C -0.217 4.217 10 N -0.391 5.391 11 C 0.318 3.682 12 O -0.402 6.402 13 C -0.177 4.177 14 C 0.070 3.930 15 H 0.055 0.945 16 C -0.508 4.508 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.027 4.027 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.173 4.173 28 C -0.161 4.161 29 C -0.087 4.087 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.239 0.761 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.950 1.187 -14.656 14.997 hybrid contribution 0.425 -0.870 0.230 0.995 sum -2.525 0.318 -14.426 14.649 Atomic orbital electron populations 1.23459 0.81412 1.04355 1.01649 1.90663 1.20315 1.06479 1.96683 1.49932 1.59231 1.10467 1.06616 1.21898 1.01665 0.98052 0.83757 1.21160 0.77324 0.85114 0.85111 1.90739 1.43813 1.18710 1.85875 1.20501 1.01938 0.91174 0.83672 0.87569 1.22179 0.99950 0.95531 1.04055 1.46085 1.43856 1.39166 1.09967 1.21192 0.80157 0.84492 0.82318 1.90602 1.31860 1.35552 1.82198 1.21931 1.07758 0.95023 0.92997 1.17627 0.94334 0.93174 0.87894 0.94457 1.20924 0.92647 0.94307 1.42929 0.92354 1.24878 0.96564 0.97015 0.95438 1.69664 1.01054 1.31766 1.50356 0.86667 0.76989 0.85632 0.78870 1.20370 1.21437 1.20441 1.20337 0.92961 0.92211 0.97239 1.20890 0.99401 0.98896 0.95837 1.20793 0.96745 0.99622 0.98855 1.20761 0.94741 1.02100 0.99659 1.21048 0.98171 1.00189 0.96718 1.21371 0.96499 0.92394 0.98407 0.87120 0.92361 0.92797 0.91521 0.90562 0.89386 0.90474 0.92392 0.90438 0.76110 0.92723 0.84945 0.92866 0.87688 0.88132 0.88328 0.88085 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.44 101.05 1.16 1.07 16 2 O -0.14 -1.41 8.79 -11.47 -0.10 -1.51 16 3 N -0.48 -5.46 3.34 -67.08 -0.22 -5.68 16 4 C 0.09 0.72 10.82 59.85 0.65 1.36 16 5 C 0.52 7.42 7.17 -10.99 -0.08 7.34 16 6 O -0.52 -8.38 15.42 5.55 0.09 -8.30 16 7 C 0.14 2.11 2.57 -69.08 -0.18 1.93 16 8 H 0.11 1.68 6.56 -51.93 -0.34 1.33 16 9 C -0.16 -2.36 9.33 37.16 0.35 -2.01 16 10 N -0.73 -13.02 4.95 -54.94 -0.27 -13.29 16 11 C 0.53 11.26 7.54 -10.99 -0.08 11.18 16 12 O -0.53 -12.71 14.65 5.55 0.08 -12.62 16 13 C -0.14 -2.98 4.07 -27.88 -0.11 -3.09 16 14 C 0.09 2.14 1.97 -92.92 -0.18 1.96 16 15 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 16 C -0.47 -12.56 7.27 -34.44 -0.25 -12.81 16 17 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 18 C 0.06 1.60 5.12 -17.82 -0.09 1.50 16 19 N -0.89 -22.74 7.99 55.43 0.44 -22.29 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 25 C -0.13 -2.85 9.71 -39.58 -0.38 -3.23 16 26 C -0.14 -2.77 10.05 -39.59 -0.40 -3.16 16 27 C -0.15 -2.95 10.05 -39.59 -0.40 -3.35 16 28 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 29 C -0.07 -1.52 7.45 -39.59 -0.30 -1.81 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.51 7.13 -51.93 -0.37 0.14 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.76 7.42 -51.93 -0.39 0.38 16 36 H 0.08 0.99 6.03 -51.93 -0.31 0.68 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.40 6.75 7.79 -40.82 -0.32 6.43 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.13 3.06 4.71 -51.93 -0.24 2.81 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 45 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.14 3.18 5.18 -52.49 -0.27 2.90 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -30.61 383.37 -7.27 -37.88 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.85 Total: 11.16 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.19 Total: -7.51 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.05 Total: -41.27 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.07 Total: -22.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.61 -7.27 -37.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863709956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.527 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds