Wall clock time and date at job start Tue Mar 31 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41595 * 114.00337 * 2 1 4 4 C 1.46498 * 120.00352 * 269.99871 * 3 2 1 5 5 C 1.34781 * 119.99485 * 89.99906 * 3 2 1 6 6 O 1.21285 * 119.99661 * 180.02562 * 5 3 2 7 7 C 1.50696 * 120.00459 * 359.97438 * 5 3 2 8 8 H 1.08995 * 109.47275 * 300.00244 * 7 5 3 9 9 C 1.53004 * 109.46729 * 59.99875 * 7 5 3 10 10 N 1.46496 * 109.47331 * 180.02562 * 7 5 3 11 11 C 1.34771 * 120.00262 * 155.00428 * 10 7 5 12 12 O 1.21289 * 119.99887 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00307 * 180.02562 * 11 10 7 14 14 C 1.53004 * 109.47276 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47026 * 304.99946 * 14 13 11 16 16 C 1.50698 * 109.47097 * 64.99791 * 14 13 11 17 17 H 1.08004 * 119.99892 * 234.68174 * 16 14 13 18 18 C 1.37876 * 120.00362 * 54.68172 * 16 14 13 19 19 N 1.31514 * 119.99826 * 4.86966 * 18 16 14 20 20 Si 1.86803 * 120.00217 * 184.87441 * 18 16 14 21 21 H 1.48497 * 109.46957 * 59.99657 * 20 18 16 22 22 H 1.48499 * 109.46974 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46918 * 299.99615 * 20 18 16 24 24 C 1.50702 * 109.47237 * 184.99683 * 14 13 11 25 25 C 1.38233 * 119.99815 * 151.48548 * 24 14 13 26 26 C 1.38237 * 119.99648 * 179.79327 * 25 24 14 27 27 C 1.38229 * 120.00151 * 0.43380 * 26 25 24 28 28 C 1.38237 * 119.99941 * 359.82041 * 27 26 25 29 29 C 1.38229 * 120.00047 * 359.97238 * 28 27 26 30 30 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47599 * 299.99931 * 1 2 3 32 32 H 1.09004 * 109.47190 * 59.99943 * 1 2 3 33 33 H 1.08999 * 109.47370 * 269.99860 * 4 3 2 34 34 H 1.08998 * 109.46832 * 30.00308 * 4 3 2 35 35 H 1.09000 * 109.47102 * 149.99367 * 4 3 2 36 36 H 1.08993 * 109.47604 * 299.99956 * 9 7 5 37 37 H 1.09004 * 109.47094 * 60.00356 * 9 7 5 38 38 H 1.09004 * 109.46776 * 179.97438 * 9 7 5 39 39 H 0.97003 * 119.99922 * 334.99665 * 10 7 5 40 40 H 1.08994 * 109.47473 * 59.99553 * 13 11 10 41 41 H 1.09002 * 109.46812 * 299.99323 * 13 11 10 42 42 H 0.97000 * 120.00260 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00199 * 359.97438 * 25 24 14 44 44 H 1.08010 * 119.99704 * 180.27426 * 26 25 24 45 45 H 1.07994 * 120.00083 * 179.83610 * 27 26 25 46 46 H 1.08001 * 120.00257 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.00160 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3030 1.9627 -1.2687 5 6 2.2790 1.9090 1.1673 6 8 2.7720 3.0172 1.1673 7 6 1.9720 1.2210 2.4723 8 1 0.9040 1.0109 2.5299 9 6 2.7549 -0.0911 2.5536 10 7 2.3587 2.0908 3.5859 11 6 1.7588 1.9571 4.7853 12 8 0.8982 1.1170 4.9426 13 6 2.1562 2.8523 5.9306 14 6 1.3291 2.4957 7.1674 15 1 0.2682 2.5484 6.9225 16 6 1.6724 1.0985 7.6157 17 1 0.8912 0.3622 7.7343 18 6 2.9837 0.7601 7.8743 19 7 3.9225 1.6797 7.8230 20 14 3.4270 -1.0045 8.2975 21 1 3.0417 -1.8948 7.1732 22 1 4.8903 -1.1053 8.5291 23 1 2.7013 -1.4161 9.5260 24 6 1.6377 3.4690 8.2758 25 6 0.6795 3.7565 9.2298 26 6 0.9641 4.6460 10.2490 27 6 2.2037 5.2547 10.3091 28 6 3.1601 4.9711 9.3520 29 6 2.8770 4.0785 8.3353 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 3.3157 1.7107 -1.5833 34 1 1.5940 1.6336 -2.0283 35 1 2.2209 3.0418 -1.1383 36 1 2.4667 -0.7381 1.7252 37 1 3.8229 0.1189 2.4961 38 1 2.5331 -0.5886 3.4978 39 1 3.0468 2.7629 3.4600 40 1 1.9738 3.8921 5.6593 41 1 3.2151 2.7141 6.1491 42 1 4.8451 1.4416 8.0046 43 1 -0.2904 3.2840 9.1806 44 1 0.2170 4.8673 10.9970 45 1 2.4251 5.9516 11.1038 46 1 4.1285 5.4471 9.3987 47 1 3.6243 3.8566 7.5879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863709956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:06 Heat of formation + Delta-G solvation = -47.350532 kcal Electronic energy + Delta-G solvation = -29546.019921 eV Core-core repulsion = 25502.938825 eV Total energy + Delta-G solvation = -4043.081096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54448 -40.42533 -39.55884 -38.52536 -36.36755 -35.67313 -34.15151 -33.00439 -32.07680 -31.36391 -29.87370 -28.39896 -27.67636 -27.43254 -25.10260 -24.02043 -22.97952 -21.76726 -21.36793 -20.94246 -19.19491 -18.24075 -18.12732 -17.60509 -17.28639 -16.93580 -16.89038 -16.54367 -16.03543 -15.65355 -15.53652 -15.35493 -15.34669 -14.99550 -14.61686 -14.42545 -14.19723 -13.78105 -13.71879 -13.58874 -13.37299 -13.35310 -13.16002 -13.09061 -12.92195 -12.80624 -12.71577 -12.61629 -12.20785 -11.85541 -11.67856 -11.65000 -11.06920 -11.06226 -11.02206 -10.63684 -10.30380 -10.23843 -10.03892 -9.38691 -9.10248 -7.91549 -6.07836 0.72681 0.90318 1.01557 1.16816 1.39335 1.40694 1.47934 1.97688 2.23053 2.47177 2.79250 3.22622 3.39254 3.82221 3.95722 4.05057 4.27361 4.33489 4.34664 4.36209 4.39805 4.43113 4.52631 4.53354 4.69281 4.70516 4.73441 4.75018 4.80778 4.83484 4.90586 5.09680 5.12806 5.15950 5.21143 5.38191 5.48385 5.55500 5.65431 5.69230 5.91696 5.95969 6.10987 6.16223 6.37871 6.43917 6.59624 6.67176 6.74271 6.87070 7.51959 7.55356 8.97505 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003328 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.173105 B = 8411.380949 C = 9359.150510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.145 6.145 3 N -0.476 5.476 4 C 0.082 3.918 5 C 0.527 3.473 6 O -0.542 6.542 7 C 0.132 3.868 8 H 0.102 0.898 9 C -0.149 4.149 10 N -0.723 5.723 11 C 0.528 3.472 12 O -0.562 6.562 13 C -0.129 4.129 14 C 0.090 3.910 15 H 0.018 0.982 16 C -0.490 4.490 17 H 0.031 0.969 18 C 0.035 3.965 19 N -0.886 5.886 20 Si 0.928 3.072 21 H -0.286 1.286 22 H -0.278 1.278 23 H -0.282 1.282 24 C -0.051 4.051 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.147 4.147 29 C -0.082 4.082 30 H 0.134 0.866 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.261 0.739 43 H 0.104 0.896 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.125 0.875 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 2.117 -15.356 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.149 6.149 3 N -0.255 5.255 4 C -0.057 4.057 5 C 0.315 3.685 6 O -0.420 6.420 7 C 0.024 3.976 8 H 0.120 0.880 9 C -0.207 4.207 10 N -0.379 5.379 11 C 0.317 3.683 12 O -0.440 6.440 13 C -0.169 4.169 14 C 0.071 3.929 15 H 0.036 0.964 16 C -0.528 4.528 17 H 0.049 0.951 18 C -0.165 4.165 19 N -0.524 5.524 20 Si 0.756 3.244 21 H -0.212 1.212 22 H -0.203 1.203 23 H -0.208 1.208 24 C -0.052 4.052 25 C -0.169 4.169 26 C -0.158 4.158 27 C -0.167 4.167 28 C -0.166 4.166 29 C -0.101 4.101 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.413 1.930 -15.247 15.557 hybrid contribution 0.193 -1.092 0.355 1.165 sum -2.220 0.838 -14.892 15.080 Atomic orbital electron populations 1.23671 0.79796 1.05963 1.01892 1.90641 1.21948 1.05603 1.96727 1.49890 1.58257 1.10690 1.06643 1.22146 1.03159 0.97613 0.82765 1.20708 0.77556 0.84806 0.85391 1.90728 1.45272 1.19609 1.86363 1.20620 1.01806 0.91204 0.83988 0.88014 1.22080 0.99965 0.95299 1.03360 1.45898 1.43105 1.39192 1.09680 1.21111 0.79944 0.83981 0.83217 1.90581 1.33511 1.36899 1.82980 1.21770 1.06449 0.96112 0.92556 1.17524 0.93474 0.92600 0.89327 0.96394 1.20905 0.92401 0.95285 1.44185 0.95108 1.25236 0.96504 0.99112 0.95623 1.69763 1.00827 1.31972 1.49885 0.86080 0.77109 0.83111 0.78059 1.21227 1.20337 1.20814 1.20314 0.94109 0.93188 0.97567 1.21079 0.99345 0.99955 0.96553 1.21160 0.97849 0.98289 0.98482 1.21193 0.93924 1.01755 0.99816 1.21359 0.99625 0.99472 0.96104 1.21323 0.95921 0.93540 0.99290 0.84822 0.93821 0.90810 0.90570 0.87604 0.89844 0.88198 0.92160 0.93335 0.75415 0.90967 0.85969 0.92902 0.87738 0.84955 0.84635 0.85689 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.22 11.44 113.37 1.30 1.08 16 2 O -0.15 -2.71 8.79 -38.77 -0.34 -3.05 16 3 N -0.48 -10.03 3.34 -484.53 -1.62 -11.65 16 4 C 0.08 1.18 10.82 127.77 1.38 2.56 16 5 C 0.53 14.64 7.17 87.66 0.63 15.27 16 6 O -0.54 -17.40 15.42 -3.04 -0.05 -17.45 16 7 C 0.13 4.14 2.57 44.25 0.11 4.25 16 8 H 0.10 3.29 6.56 -2.39 -0.02 3.28 16 9 C -0.15 -4.44 9.33 71.98 0.67 -3.77 16 10 N -0.72 -26.27 4.95 -446.11 -2.21 -28.48 16 11 C 0.53 23.33 7.54 87.66 0.66 23.99 16 12 O -0.56 -28.38 14.65 -3.06 -0.04 -28.42 16 13 C -0.13 -5.79 4.07 29.85 0.12 -5.66 16 14 C 0.09 4.51 1.97 -12.28 -0.02 4.48 16 15 H 0.02 0.92 7.91 -2.38 -0.02 0.90 16 16 C -0.49 -27.22 7.27 25.60 0.19 -27.03 16 17 H 0.03 1.82 7.82 -2.91 -0.02 1.80 16 18 C 0.03 1.86 5.12 84.65 0.43 2.29 16 19 N -0.89 -45.70 7.99 21.45 0.17 -45.53 16 20 Si 0.93 44.50 29.54 68.60 2.03 46.53 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 C -0.05 -2.40 4.69 -19.87 -0.09 -2.49 16 25 C -0.15 -6.51 9.71 22.27 0.22 -6.29 16 26 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 27 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 28 C -0.15 -5.64 10.05 22.27 0.22 -5.41 16 29 C -0.08 -3.64 7.45 22.27 0.17 -3.47 16 30 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 0.73 7.13 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.32 7.42 -2.39 -0.02 1.30 16 36 H 0.10 2.48 6.03 -2.39 -0.01 2.47 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 39 H 0.41 13.90 7.79 -92.71 -0.72 13.18 16 40 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.12 5.79 4.71 -2.39 -0.01 5.78 16 42 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 43 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 44 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 46 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 47 H 0.13 5.89 5.18 -2.91 -0.02 5.88 16 Total: -1.00 -67.29 383.37 4.63 -62.65 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.27 Total: 35.49 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 6.43 Total: -10.09 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.66 Total: -85.65 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.43 Total: -48.92 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.29 4.63 -62.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863709956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.304 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds