Wall clock time and date at job start Tue Mar 31 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00259 * 2 1 4 4 O 1.20832 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00586 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47563 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47423 * 175.68312 * 6 5 3 8 8 C 1.36942 * 119.99821 * 95.52186 * 7 6 5 9 9 H 1.08000 * 119.99877 * 220.01768 * 8 7 6 10 10 C 1.38810 * 120.00037 * 40.01801 * 8 7 6 11 11 N 1.31615 * 120.00028 * 214.38845 * 10 8 7 12 12 Si 1.86798 * 120.00054 * 34.38918 * 10 8 7 13 13 H 1.48498 * 109.47275 * 95.70696 * 12 10 8 14 14 H 1.48499 * 109.47174 * 215.70824 * 12 10 8 15 15 H 1.48503 * 109.47018 * 335.70769 * 12 10 8 16 16 C 1.46500 * 120.00220 * 275.52609 * 7 6 5 17 17 H 1.09006 * 109.46702 * 359.97438 * 16 7 6 18 18 C 1.53001 * 109.47228 * 119.99637 * 16 7 6 19 19 C 1.50700 * 109.46699 * 239.99985 * 16 7 6 20 20 O 1.21282 * 120.00661 * 359.97438 * 19 16 7 21 21 N 1.34777 * 119.99590 * 179.97438 * 19 16 7 22 22 C 1.46510 * 120.00244 * 3.84315 * 21 19 16 23 23 C 1.39922 * 120.00088 * 183.84223 * 21 19 16 24 24 C 1.38872 * 120.07219 * 248.04968 * 23 21 19 25 25 C 1.38111 * 119.92854 * 179.78968 * 24 23 21 26 26 C 1.38283 * 120.07078 * 0.48721 * 25 24 23 27 27 C 1.38278 * 120.14394 * 359.74866 * 26 25 24 28 28 C 1.38117 * 120.06730 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46876 * 60.00658 * 1 2 3 30 30 H 1.09007 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47174 * 300.00346 * 1 2 3 32 32 H 1.09004 * 109.47284 * 59.99257 * 5 3 2 33 33 H 1.09003 * 109.46824 * 299.99434 * 5 3 2 34 34 H 1.09004 * 109.46740 * 295.68226 * 6 5 3 35 35 H 1.09003 * 109.46973 * 55.68163 * 6 5 3 36 36 H 0.97004 * 120.00442 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.46551 * 180.02562 * 18 16 7 38 38 H 1.08998 * 109.46865 * 299.99994 * 18 16 7 39 39 H 1.09000 * 109.46839 * 60.00131 * 18 16 7 40 40 H 1.08995 * 109.46595 * 89.99609 * 22 21 19 41 41 H 1.08992 * 109.46994 * 210.00449 * 22 21 19 42 42 H 1.09001 * 109.46356 * 329.99861 * 22 21 19 43 43 H 1.07997 * 120.03870 * 0.02713 * 24 23 21 44 44 H 1.08003 * 119.96379 * 180.23358 * 25 24 23 45 45 H 1.07999 * 119.92736 * 179.72149 * 26 25 24 46 46 H 1.08000 * 119.96944 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.03311 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4594 2.8199 0.1023 8 6 6.2203 2.9448 -1.0294 9 1 7.1494 2.4013 -1.1181 10 6 5.7974 3.7697 -2.0626 11 7 6.0512 3.4425 -3.3119 12 14 4.8682 5.3443 -1.6798 13 1 5.8181 6.4854 -1.6520 14 1 3.8416 5.5802 -2.7266 15 1 4.2061 5.2191 -0.3565 16 6 6.1047 2.7641 1.4163 17 1 5.3439 2.6651 2.1907 18 6 7.0481 1.5608 1.4706 19 6 6.8908 4.0295 1.6439 20 8 6.9106 4.8928 0.7922 21 7 7.5720 4.2020 2.7941 22 6 7.6175 3.1256 3.7869 23 6 8.2357 5.4090 3.0399 24 6 9.6235 5.4451 3.0762 25 6 10.2756 6.6390 3.3148 26 6 9.5481 7.7955 3.5274 27 6 8.1660 7.7620 3.4967 28 6 7.5079 6.5722 3.2540 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9557 0.7808 -0.8908 33 1 3.9564 0.7807 0.8892 34 1 3.6757 3.2165 -0.9273 35 1 3.5478 3.2550 0.8477 36 1 5.7560 4.0192 -4.0339 37 1 7.5278 1.5191 2.4485 38 1 6.4794 0.6456 1.3059 39 1 7.8087 1.6603 0.6962 40 1 8.4756 2.4837 3.5877 41 1 7.7087 3.5551 4.7845 42 1 6.7019 2.5372 3.7270 43 1 10.1922 4.5415 2.9142 44 1 11.3550 6.6685 3.3394 45 1 10.0604 8.7269 3.7182 46 1 7.6006 8.6669 3.6635 47 1 6.4285 6.5466 3.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879475164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:33 Heat of formation + Delta-G solvation = -41.869620 kcal Electronic energy + Delta-G solvation = -29787.018827 eV Core-core repulsion = 25744.175401 eV Total energy + Delta-G solvation = -4042.843426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.22863 -40.07152 -38.34359 -36.50825 -35.78438 -35.04511 -32.21635 -31.79796 -30.83135 -30.02535 -28.78062 -27.37362 -26.63980 -24.68127 -23.81361 -22.79974 -22.41652 -20.96249 -20.28359 -18.98835 -17.49153 -17.08662 -16.70058 -16.30992 -16.17311 -16.01365 -15.78077 -15.39734 -14.99128 -14.37798 -14.15881 -13.94702 -13.78764 -13.39867 -13.31970 -13.11791 -13.04970 -12.60323 -12.52304 -12.49112 -12.21215 -12.13385 -11.87206 -11.63695 -11.53959 -11.50805 -11.12477 -11.05377 -10.82551 -10.62610 -10.40499 -10.26086 -10.10257 -9.97302 -9.60143 -9.06782 -8.87289 -8.81290 -8.34243 -8.13176 -6.88379 -6.02018 -3.35302 1.40322 1.49787 2.56929 2.99198 3.28025 3.35595 3.59771 3.71474 3.83388 3.86926 4.67574 4.82976 5.00866 5.02626 5.11473 5.17550 5.18790 5.23078 5.25817 5.32047 5.35850 5.44005 5.50430 5.57176 5.60940 5.68006 5.69383 5.73234 5.74028 5.77204 5.98591 6.10028 6.14304 6.16381 6.35870 6.42992 6.54092 6.57970 6.64452 6.68363 6.79510 6.81365 6.90293 7.30665 7.72053 8.00976 8.09923 8.35803 8.89008 9.00893 9.75539 10.08212 11.11518 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.003717 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.654416 B = 7530.499241 C = 8322.704928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.514 6.514 5 C -0.131 4.131 6 C 0.168 3.832 7 N -0.572 5.572 8 C -0.271 4.271 9 H 0.077 0.923 10 C 0.061 3.939 11 N -0.878 5.878 12 Si 0.874 3.126 13 H -0.290 1.290 14 H -0.309 1.309 15 H -0.268 1.268 16 C 0.153 3.847 17 H 0.076 0.924 18 C -0.164 4.164 19 C 0.494 3.506 20 O -0.479 6.479 21 N -0.596 5.596 22 C 0.085 3.915 23 C 0.158 3.842 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.111 4.111 28 C -0.112 4.112 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -3.461 16.653 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.305 3.695 4 O -0.401 6.401 5 C -0.171 4.171 6 C 0.041 3.959 7 N -0.291 5.291 8 C -0.398 4.398 9 H 0.095 0.905 10 C -0.142 4.142 11 N -0.516 5.516 12 Si 0.703 3.297 13 H -0.217 1.217 14 H -0.238 1.238 15 H -0.193 1.193 16 C 0.042 3.958 17 H 0.094 0.906 18 C -0.223 4.223 19 C 0.281 3.719 20 O -0.348 6.348 21 N -0.331 5.331 22 C -0.058 4.058 23 C 0.067 3.933 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.148 4.148 27 C -0.130 4.130 28 C -0.131 4.131 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.301 -2.691 15.904 16.132 hybrid contribution -0.611 1.130 0.081 1.287 sum -0.310 -1.561 15.984 16.063 Atomic orbital electron populations 1.23171 0.77475 1.03061 1.02266 1.86562 1.22685 1.34489 1.84486 1.24432 0.92762 0.80841 0.71450 1.90642 1.67493 1.36399 1.45581 1.22356 0.84776 1.04264 1.05730 1.20927 0.83477 0.90319 1.01178 1.44069 1.00986 1.83346 1.00740 1.18344 1.07460 1.23156 0.90863 0.90509 1.25455 0.97024 0.97011 0.94736 1.70041 1.46849 1.36021 0.98704 0.86899 0.78261 0.87016 0.77556 1.21743 1.23754 1.19274 1.20587 0.94113 0.90751 0.90371 0.90575 1.22389 1.00518 0.97809 1.01575 1.22589 0.78875 0.90791 0.79686 1.90670 1.59240 1.43649 1.41225 1.46028 1.53508 1.13527 1.20017 1.21939 1.02465 0.90050 0.91303 1.17663 0.90714 0.86651 0.98272 1.21256 0.93446 0.98563 1.01027 1.20981 0.99652 0.92401 1.00114 1.21096 0.94125 0.98167 1.01420 1.21004 0.94560 0.97369 1.00077 1.21283 1.00110 0.92487 0.99253 0.92141 0.88605 0.92309 0.86857 0.88581 0.91403 0.93790 0.92753 0.92402 0.91958 0.91581 0.92391 0.91878 0.90196 0.85990 0.86021 0.86235 0.86063 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.44 10.56 -39.24 -0.41 -5.85 16 3 C 0.46 8.02 7.96 36.00 0.29 8.31 16 4 O -0.51 -10.34 15.68 -18.75 -0.29 -10.64 16 5 C -0.13 -2.27 6.13 -27.89 -0.17 -2.44 16 6 C 0.17 3.60 3.31 -4.04 -0.01 3.59 16 7 N -0.57 -12.93 1.74 -166.97 -0.29 -13.22 16 8 C -0.27 -7.35 7.82 -15.06 -0.12 -7.47 16 9 H 0.08 2.24 7.03 -52.49 -0.37 1.87 16 10 C 0.06 1.80 4.94 -17.43 -0.09 1.72 16 11 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 12 Si 0.87 24.62 24.49 -169.99 -4.16 20.45 16 13 H -0.29 -8.63 7.11 56.52 0.40 -8.23 16 14 H -0.31 -8.72 7.11 56.52 0.40 -8.31 16 15 H -0.27 -7.41 6.20 56.52 0.35 -7.06 16 16 C 0.15 2.80 2.37 -69.08 -0.16 2.63 16 17 H 0.08 1.19 7.26 -51.93 -0.38 0.81 16 18 C -0.16 -2.50 8.73 37.16 0.32 -2.18 16 19 C 0.49 9.96 6.84 -10.99 -0.08 9.88 16 20 O -0.48 -12.24 13.01 5.56 0.07 -12.17 16 21 N -0.60 -9.47 2.92 -120.82 -0.35 -9.82 16 22 C 0.08 0.91 8.70 59.85 0.52 1.43 16 23 C 0.16 2.53 4.71 -83.69 -0.39 2.14 16 24 C -0.12 -1.74 9.87 -39.39 -0.39 -2.13 16 25 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 26 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16 28 C -0.11 -1.76 9.55 -39.39 -0.38 -2.14 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.68 5.04 -51.93 -0.26 1.42 16 35 H 0.04 0.92 7.88 -51.93 -0.41 0.51 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.06 0.68 4.35 -51.93 -0.23 0.45 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.20 7.01 -51.93 -0.36 0.84 16 40 H 0.06 0.55 7.13 -51.93 -0.37 0.18 16 41 H 0.06 0.57 8.05 -51.93 -0.42 0.16 16 42 H 0.08 0.76 5.77 -51.93 -0.30 0.46 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -36.43 381.38 -6.63 -43.06 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.93 Total: -0.56 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.78 Total: 9.13 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.13 Total: -49.17 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.64 Total: -28.66 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.16 Total: 20.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.43 -6.63 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.193 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds