Wall clock time and date at job start Tue Mar 31 2020 18:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00259 * 2 1 4 4 O 1.20832 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00586 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47563 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47423 * 175.68312 * 6 5 3 8 8 C 1.36942 * 119.99821 * 95.52186 * 7 6 5 9 9 H 1.08000 * 119.99877 * 220.01768 * 8 7 6 10 10 C 1.38810 * 120.00037 * 40.01801 * 8 7 6 11 11 N 1.31615 * 120.00028 * 214.38845 * 10 8 7 12 12 Si 1.86798 * 120.00054 * 34.38918 * 10 8 7 13 13 H 1.48498 * 109.47275 * 95.70696 * 12 10 8 14 14 H 1.48499 * 109.47174 * 215.70824 * 12 10 8 15 15 H 1.48503 * 109.47018 * 335.70769 * 12 10 8 16 16 C 1.46500 * 120.00220 * 275.52609 * 7 6 5 17 17 H 1.09006 * 109.46702 * 359.97438 * 16 7 6 18 18 C 1.53001 * 109.47228 * 119.99637 * 16 7 6 19 19 C 1.50700 * 109.46699 * 239.99985 * 16 7 6 20 20 O 1.21282 * 120.00661 * 359.97438 * 19 16 7 21 21 N 1.34777 * 119.99590 * 179.97438 * 19 16 7 22 22 C 1.46510 * 120.00244 * 3.84315 * 21 19 16 23 23 C 1.39922 * 120.00088 * 183.84223 * 21 19 16 24 24 C 1.38872 * 120.07219 * 248.04968 * 23 21 19 25 25 C 1.38111 * 119.92854 * 179.78968 * 24 23 21 26 26 C 1.38283 * 120.07078 * 0.48721 * 25 24 23 27 27 C 1.38278 * 120.14394 * 359.74866 * 26 25 24 28 28 C 1.38117 * 120.06730 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46876 * 60.00658 * 1 2 3 30 30 H 1.09007 * 109.46712 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47174 * 300.00346 * 1 2 3 32 32 H 1.09004 * 109.47284 * 59.99257 * 5 3 2 33 33 H 1.09003 * 109.46824 * 299.99434 * 5 3 2 34 34 H 1.09004 * 109.46740 * 295.68226 * 6 5 3 35 35 H 1.09003 * 109.46973 * 55.68163 * 6 5 3 36 36 H 0.97004 * 120.00442 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.46551 * 180.02562 * 18 16 7 38 38 H 1.08998 * 109.46865 * 299.99994 * 18 16 7 39 39 H 1.09000 * 109.46839 * 60.00131 * 18 16 7 40 40 H 1.08995 * 109.46595 * 89.99609 * 22 21 19 41 41 H 1.08992 * 109.46994 * 210.00449 * 22 21 19 42 42 H 1.09001 * 109.46356 * 329.99861 * 22 21 19 43 43 H 1.07997 * 120.03870 * 0.02713 * 24 23 21 44 44 H 1.08003 * 119.96379 * 180.23358 * 25 24 23 45 45 H 1.07999 * 119.92736 * 179.72149 * 26 25 24 46 46 H 1.08000 * 119.96944 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.03311 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4594 2.8199 0.1023 8 6 6.2203 2.9448 -1.0294 9 1 7.1494 2.4013 -1.1181 10 6 5.7974 3.7697 -2.0626 11 7 6.0512 3.4425 -3.3119 12 14 4.8682 5.3443 -1.6798 13 1 5.8181 6.4854 -1.6520 14 1 3.8416 5.5802 -2.7266 15 1 4.2061 5.2191 -0.3565 16 6 6.1047 2.7641 1.4163 17 1 5.3439 2.6651 2.1907 18 6 7.0481 1.5608 1.4706 19 6 6.8908 4.0295 1.6439 20 8 6.9106 4.8928 0.7922 21 7 7.5720 4.2020 2.7941 22 6 7.6175 3.1256 3.7869 23 6 8.2357 5.4090 3.0399 24 6 9.6235 5.4451 3.0762 25 6 10.2756 6.6390 3.3148 26 6 9.5481 7.7955 3.5274 27 6 8.1660 7.7620 3.4967 28 6 7.5079 6.5722 3.2540 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9557 0.7808 -0.8908 33 1 3.9564 0.7807 0.8892 34 1 3.6757 3.2165 -0.9273 35 1 3.5478 3.2550 0.8477 36 1 5.7560 4.0192 -4.0339 37 1 7.5278 1.5191 2.4485 38 1 6.4794 0.6456 1.3059 39 1 7.8087 1.6603 0.6962 40 1 8.4756 2.4837 3.5877 41 1 7.7087 3.5551 4.7845 42 1 6.7019 2.5372 3.7270 43 1 10.1922 4.5415 2.9142 44 1 11.3550 6.6685 3.3394 45 1 10.0604 8.7269 3.7182 46 1 7.6006 8.6669 3.6635 47 1 6.4285 6.5466 3.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:32 Heat of formation + Delta-G solvation = -65.642279 kcal Electronic energy + Delta-G solvation = -29788.049687 eV Core-core repulsion = 25744.175401 eV Total energy + Delta-G solvation = -4043.874286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57039 -41.37996 -39.61200 -37.95465 -37.28077 -36.44550 -34.08970 -33.41721 -31.87792 -31.36961 -30.11377 -28.53814 -27.76944 -26.41585 -25.16572 -24.25247 -23.49696 -22.39958 -21.68522 -20.43063 -19.00000 -18.30470 -18.22622 -17.78704 -17.58341 -17.32482 -17.13265 -16.73333 -16.44451 -16.10065 -15.53126 -15.32727 -14.97611 -14.78771 -14.55528 -14.41818 -14.34221 -14.24389 -13.93973 -13.78753 -13.55424 -13.49072 -13.34458 -13.04013 -12.89266 -12.73288 -12.54798 -12.44711 -12.24612 -12.15891 -12.00006 -11.81376 -11.77420 -11.65165 -11.49803 -10.61411 -10.47480 -10.15000 -9.89863 -9.31635 -8.79532 -8.28468 -5.51450 0.32773 0.43614 1.20971 1.28128 1.37869 1.52721 1.76399 1.86406 2.09868 2.45285 2.81368 3.03631 3.30143 3.87184 3.93992 3.99689 4.05953 4.15050 4.22104 4.23352 4.29057 4.35082 4.35268 4.36563 4.51490 4.54068 4.57545 4.62792 4.70926 4.72906 4.74820 4.82946 4.98045 5.05542 5.06829 5.12532 5.17210 5.41400 5.42130 5.51535 5.55251 5.56602 5.73801 5.90456 6.14110 6.21737 6.43625 6.76259 6.98455 7.45231 7.63621 8.02325 8.90422 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.003717 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.654416 B = 7530.499241 C = 8322.704928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.547 6.547 5 C -0.118 4.118 6 C 0.166 3.834 7 N -0.585 5.585 8 C -0.222 4.222 9 H 0.057 0.943 10 C 0.014 3.986 11 N -0.921 5.921 12 Si 0.913 3.087 13 H -0.321 1.321 14 H -0.317 1.317 15 H -0.265 1.265 16 C 0.147 3.853 17 H 0.114 0.886 18 C -0.153 4.153 19 C 0.487 3.513 20 O -0.549 6.549 21 N -0.586 5.586 22 C 0.072 3.928 23 C 0.129 3.871 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.259 0.741 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -5.287 20.160 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.313 3.687 4 O -0.438 6.438 5 C -0.158 4.158 6 C 0.040 3.960 7 N -0.305 5.305 8 C -0.352 4.352 9 H 0.074 0.926 10 C -0.184 4.184 11 N -0.563 5.563 12 Si 0.745 3.255 13 H -0.251 1.251 14 H -0.246 1.246 15 H -0.190 1.190 16 C 0.038 3.962 17 H 0.132 0.868 18 C -0.211 4.211 19 C 0.276 3.724 20 O -0.423 6.423 21 N -0.319 5.319 22 C -0.068 4.068 23 C 0.038 3.962 24 C -0.153 4.153 25 C -0.129 4.129 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.151 0.849 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.157 0.843 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.906 -4.573 19.520 20.069 hybrid contribution -0.761 1.664 -0.764 1.982 sum 0.146 -2.909 18.756 18.981 Atomic orbital electron populations 1.23541 0.75184 1.05687 1.02267 1.86526 1.24803 1.32674 1.83748 1.24258 0.92683 0.81057 0.70668 1.90641 1.68180 1.37668 1.47317 1.22032 0.85274 1.01132 1.07313 1.20788 0.82814 0.92990 0.99401 1.44120 1.01205 1.83740 1.01463 1.18222 1.05781 1.19494 0.91697 0.92583 1.25775 0.98808 0.98653 0.95172 1.70088 1.50097 1.37032 0.99110 0.86266 0.76594 0.85523 0.77071 1.25112 1.24605 1.18993 1.20895 0.95443 0.91090 0.88803 0.86792 1.22325 0.99201 0.96706 1.02876 1.22795 0.79044 0.90483 0.80124 1.90643 1.62002 1.45740 1.43922 1.45872 1.51887 1.14656 1.19469 1.22323 1.04247 0.89219 0.91003 1.17920 0.91726 0.86714 0.99791 1.21457 0.92698 0.99936 1.01177 1.21406 1.01336 0.91696 0.98504 1.21517 0.93593 0.99554 0.99823 1.21309 0.95652 0.97222 0.99566 1.21349 0.99548 0.93774 1.01152 0.92792 0.84672 0.91777 0.87544 0.84600 0.95424 0.93255 0.93228 0.88154 0.90112 0.94953 0.90405 0.89835 0.88351 0.84917 0.82881 0.82982 0.84271 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -9.84 10.56 -51.37 -0.54 -10.38 16 3 C 0.47 15.52 7.96 71.23 0.57 16.09 16 4 O -0.55 -21.77 15.68 21.95 0.34 -21.42 16 5 C -0.12 -3.86 6.13 29.85 0.18 -3.68 16 6 C 0.17 7.07 3.31 86.38 0.29 7.35 16 7 N -0.58 -26.17 1.74 -682.18 -1.19 -27.36 16 8 C -0.22 -12.34 7.82 84.03 0.66 -11.68 16 9 H 0.06 3.36 7.03 -2.91 -0.02 3.34 16 10 C 0.01 0.88 4.94 84.86 0.42 1.30 16 11 N -0.92 -58.94 13.97 21.65 0.30 -58.63 16 12 Si 0.91 53.74 24.49 68.60 1.68 55.42 16 13 H -0.32 -20.24 7.11 99.48 0.71 -19.54 16 14 H -0.32 -18.63 7.11 99.48 0.71 -17.93 16 15 H -0.27 -15.17 6.20 99.48 0.62 -14.55 16 16 C 0.15 5.09 2.37 44.25 0.11 5.19 16 17 H 0.11 3.10 7.26 -2.38 -0.02 3.08 16 18 C -0.15 -4.16 8.73 71.98 0.63 -3.53 16 19 C 0.49 19.41 6.84 87.66 0.60 20.01 16 20 O -0.55 -28.85 13.01 -3.04 -0.04 -28.89 16 21 N -0.59 -17.76 2.92 -654.56 -1.91 -19.67 16 22 C 0.07 1.29 8.70 127.77 1.11 2.40 16 23 C 0.13 4.05 4.71 38.15 0.18 4.23 16 24 C -0.13 -3.54 9.87 22.39 0.22 -3.32 16 25 C -0.11 -2.46 10.04 22.25 0.22 -2.23 16 26 C -0.13 -2.77 10.04 22.29 0.22 -2.55 16 27 C -0.12 -3.08 10.04 22.25 0.22 -2.86 16 28 C -0.14 -4.40 9.55 22.39 0.21 -4.19 16 29 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.14 1.65 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 32 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 33 H 0.14 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.03 1.39 5.04 -2.38 -0.01 1.38 16 35 H 0.05 2.02 7.88 -2.39 -0.02 2.01 16 36 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 37 H 0.10 1.86 4.35 -2.39 -0.01 1.85 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.11 7.01 -2.39 -0.02 1.09 16 40 H 0.08 1.13 7.13 -2.39 -0.02 1.12 16 41 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 42 H 0.10 1.40 5.77 -2.39 -0.01 1.38 16 43 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 44 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 46 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 47 H 0.10 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -86.48 381.38 6.56 -79.92 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.88 Total: 6.76 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.04 Total: 24.26 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -2.80 Total: -105.66 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.24 Total: -60.69 kcal Atomic # 14 Polarization: 53.74 SS G_CDS: 1.68 Total: 55.42 kcal Total: -86.48 6.56 -79.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.274 kcal (2) G-P(sol) polarization free energy of solvation -86.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds