Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 117.00031 * 2 1 4 4 O 1.20824 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99986 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46889 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47109 * 179.97438 * 6 5 3 8 8 C 1.36938 * 120.00264 * 270.00100 * 7 6 5 9 9 H 1.07991 * 120.00326 * 142.46211 * 8 7 6 10 10 C 1.38813 * 119.99366 * 322.46485 * 8 7 6 11 11 N 1.31615 * 120.00428 * 338.28209 * 10 8 7 12 12 Si 1.86803 * 119.99578 * 158.28467 * 10 8 7 13 13 H 1.48500 * 109.46977 * 90.00074 * 12 10 8 14 14 H 1.48504 * 109.47229 * 209.99477 * 12 10 8 15 15 H 1.48493 * 109.47198 * 330.00117 * 12 10 8 16 16 C 1.46499 * 119.99810 * 89.99416 * 7 6 5 17 17 H 1.08996 * 109.47293 * 354.60822 * 16 7 6 18 18 C 1.53000 * 109.47100 * 234.60405 * 16 7 6 19 19 C 1.50705 * 109.46787 * 114.60817 * 16 7 6 20 20 O 1.21279 * 120.00180 * 359.97438 * 19 16 7 21 21 N 1.34776 * 119.99736 * 180.02562 * 19 16 7 22 22 C 1.46497 * 120.00082 * 179.97438 * 21 19 16 23 23 C 1.50699 * 109.47559 * 179.97438 * 22 21 19 24 24 C 1.38231 * 120.00215 * 269.72723 * 23 22 21 25 25 C 1.38236 * 120.00352 * 179.76183 * 24 23 22 26 26 C 1.38242 * 119.99597 * 0.50719 * 25 24 23 27 27 C 1.38235 * 120.00029 * 359.74913 * 26 25 24 28 28 C 1.38232 * 119.99894 * 89.99703 * 23 22 21 29 29 H 1.09000 * 109.46972 * 59.99978 * 1 2 3 30 30 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46799 * 299.99980 * 1 2 3 32 32 H 1.08994 * 109.47305 * 59.99839 * 5 3 2 33 33 H 1.09006 * 109.46723 * 300.00179 * 5 3 2 34 34 H 1.08998 * 109.47483 * 60.00145 * 6 5 3 35 35 H 1.08997 * 109.47447 * 299.99425 * 6 5 3 36 36 H 0.97003 * 120.00268 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.47761 * 294.26436 * 18 16 7 38 38 H 1.09000 * 109.47299 * 54.26888 * 18 16 7 39 39 H 1.09003 * 109.46695 * 174.26146 * 18 16 7 40 40 H 0.97005 * 120.00448 * 359.97438 * 21 19 16 41 41 H 1.09000 * 109.46781 * 300.00121 * 22 21 19 42 42 H 1.09005 * 109.46834 * 59.99781 * 22 21 19 43 43 H 1.08003 * 119.99871 * 0.02562 * 24 23 22 44 44 H 1.07998 * 120.00349 * 180.22766 * 25 24 23 45 45 H 1.07998 * 119.99746 * 179.71638 * 26 25 24 46 46 H 1.07998 * 120.00144 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.99980 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8188 0.0002 8 6 6.1470 2.8540 1.1861 9 1 7.0878 2.3327 1.2827 10 6 5.6307 3.5598 2.2642 11 7 4.7527 4.5195 2.0629 12 14 6.1820 3.1475 4.0007 13 1 7.3693 3.9678 4.3509 14 1 5.0802 3.4399 4.9525 15 1 6.5349 1.7072 4.0792 16 6 6.1946 2.8576 -1.2685 17 1 5.4963 2.7247 -2.0947 18 6 7.2335 1.7346 -1.2929 19 6 6.8895 4.1878 -1.4071 20 8 6.7837 5.0213 -0.5325 21 7 7.6276 4.4514 -2.5035 22 6 8.3026 5.7445 -2.6385 23 6 9.0552 5.7846 -3.9436 24 6 10.3696 5.3601 -3.9968 25 6 11.0585 5.3922 -5.1949 26 6 10.4360 5.8587 -6.3376 27 6 9.1232 6.2882 -6.2833 28 6 8.4328 6.2511 -5.0863 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9558 0.7809 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2356 0.8906 35 1 3.6101 3.2367 -0.8893 36 1 4.3917 5.0124 2.8163 37 1 7.9900 1.9228 -0.5311 38 1 6.7436 0.7821 -1.0910 39 1 7.7069 1.6989 -2.2741 40 1 7.7120 3.7849 -3.2032 41 1 7.5623 6.5444 -2.6209 42 1 9.0012 5.8777 -1.8124 43 1 10.8572 4.9993 -3.1031 44 1 12.0843 5.0571 -5.2372 45 1 10.9756 5.8881 -7.2727 46 1 8.6370 6.6531 -7.1760 47 1 7.4073 6.5873 -5.0437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879476177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -70.369862 kcal Electronic energy + Delta-G solvation = -28702.095241 eV Core-core repulsion = 24658.015951 eV Total energy + Delta-G solvation = -4044.079289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.94109 -39.55805 -38.56832 -36.30135 -35.57993 -34.20469 -32.16460 -31.44377 -31.00917 -30.86676 -28.60222 -27.20054 -25.97935 -24.74140 -23.24390 -22.67045 -21.66875 -21.01768 -19.94744 -19.29797 -17.41065 -17.11605 -16.50141 -16.14142 -15.94991 -15.65210 -15.47673 -15.36801 -14.98859 -14.56151 -14.17693 -13.88049 -13.58079 -13.44343 -13.26340 -13.01687 -12.94914 -12.81778 -12.47850 -12.20133 -12.06551 -11.96349 -11.59319 -11.38138 -11.31490 -11.12224 -11.08257 -10.95252 -10.71214 -10.60034 -10.48900 -10.12416 -9.99120 -9.87315 -9.65377 -9.09653 -9.04501 -8.53581 -8.37397 -8.32045 -6.56236 -5.68107 -3.26583 1.17090 1.28125 2.75465 3.16082 3.42520 3.50230 3.50629 3.56035 3.78117 4.12905 4.54636 4.70959 4.77305 4.88058 5.01413 5.20282 5.27559 5.33345 5.35772 5.39029 5.46267 5.49152 5.65490 5.70680 5.70834 5.84450 5.90714 5.96962 5.97049 6.01320 6.10679 6.22001 6.32568 6.32734 6.37359 6.45563 6.57519 6.59372 6.78847 6.86977 6.89273 7.00066 7.10632 7.73164 7.91463 8.24353 8.28176 8.57523 9.19050 9.34964 9.84480 10.39410 11.33744 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002998 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.181215 B = 9336.463507 C =10948.964227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.130 4.130 6 C 0.162 3.838 7 N -0.551 5.551 8 C -0.263 4.263 9 H 0.063 0.937 10 C 0.027 3.973 11 N -0.861 5.861 12 Si 0.890 3.110 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.150 3.850 17 H 0.071 0.929 18 C -0.146 4.146 19 C 0.480 3.520 20 O -0.479 6.479 21 N -0.748 5.748 22 C 0.161 3.839 23 C -0.095 4.095 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.104 4.104 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.252 0.748 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.389 0.611 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -4.579 -15.081 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 C 0.303 3.697 4 O -0.394 6.394 5 C -0.170 4.170 6 C 0.035 3.965 7 N -0.269 5.269 8 C -0.393 4.393 9 H 0.080 0.920 10 C -0.176 4.176 11 N -0.501 5.501 12 Si 0.719 3.281 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.203 1.203 16 C 0.038 3.962 17 H 0.089 0.911 18 C -0.206 4.206 19 C 0.264 3.736 20 O -0.348 6.348 21 N -0.405 5.405 22 C 0.037 3.963 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.222 0.778 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.219 -3.494 -14.210 15.230 hybrid contribution 0.186 -0.257 0.491 0.584 sum 4.405 -3.752 -13.720 14.890 Atomic orbital electron populations 1.23133 0.77786 1.02830 1.02205 1.86569 1.22475 1.34912 1.84740 1.24512 0.92853 0.80712 0.71605 1.90645 1.67380 1.36284 1.45110 1.22391 0.84463 1.05557 1.04583 1.20759 0.83471 0.88801 1.03474 1.43716 1.00760 1.82519 0.99889 1.18757 1.06638 1.26539 0.87362 0.91987 1.25194 0.99135 0.94375 0.98864 1.70053 1.31526 1.18808 1.29681 0.86541 0.77955 0.78318 0.85327 1.21312 1.21609 1.20265 1.20608 0.93730 0.90201 0.91662 0.91135 1.22049 0.99566 0.98898 1.00050 1.22610 0.78716 0.91592 0.80711 1.90797 1.58282 1.47179 1.38551 1.46599 1.53826 1.16559 1.23547 1.20036 0.95461 0.87936 0.92895 1.20080 0.94575 0.99492 0.95445 1.21157 0.94098 0.98768 0.98134 1.21153 0.99946 1.00207 0.92848 1.21161 0.95203 0.99260 0.98328 1.21150 0.94845 1.00358 0.97813 1.21157 0.99972 0.98884 0.92213 0.92377 0.88817 0.92251 0.89533 0.87799 0.87657 0.94913 0.93750 0.92183 0.92102 0.93935 0.77786 0.91466 0.91412 0.85818 0.86115 0.86290 0.86126 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.90 10.57 -39.26 -0.41 -6.32 16 3 C 0.46 8.60 7.96 36.01 0.29 8.89 16 4 O -0.51 -10.98 15.73 -18.75 -0.29 -11.27 16 5 C -0.13 -2.42 6.13 -27.89 -0.17 -2.59 16 6 C 0.16 3.74 4.54 -4.04 -0.02 3.72 16 7 N -0.55 -12.99 2.11 -166.98 -0.35 -13.34 16 8 C -0.26 -6.95 7.73 -15.06 -0.12 -7.07 16 9 H 0.06 1.64 6.82 -52.49 -0.36 1.28 16 10 C 0.03 0.76 4.95 -17.43 -0.09 0.67 16 11 N -0.86 -25.57 11.49 55.49 0.64 -24.93 16 12 Si 0.89 21.78 29.61 -169.99 -5.03 16.74 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.15 2.92 3.16 -69.08 -0.22 2.70 16 17 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 18 C -0.15 -2.38 8.77 37.16 0.33 -2.05 16 19 C 0.48 10.00 7.06 -10.98 -0.08 9.92 16 20 O -0.48 -12.77 15.52 5.56 0.09 -12.69 16 21 N -0.75 -11.79 5.45 -61.47 -0.34 -12.13 16 22 C 0.16 2.38 5.80 -5.20 -0.03 2.35 16 23 C -0.10 -1.15 5.25 -104.63 -0.55 -1.69 16 24 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 28 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.11 2.88 5.48 -51.93 -0.28 2.60 16 35 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.06 1.09 7.13 -51.93 -0.37 0.72 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.54 7.73 -51.93 -0.40 0.14 16 40 H 0.39 5.07 8.00 -40.82 -0.33 4.75 16 41 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 42 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 43 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -34.43 397.77 -8.45 -42.87 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.18 Total: 6.37 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.55 Total: 8.70 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.05 Total: -50.40 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.62 Total: -30.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.43 -8.45 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.497 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds