Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 117.00031 * 2 1 4 4 O 1.20824 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99986 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46889 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47109 * 179.97438 * 6 5 3 8 8 C 1.36938 * 120.00264 * 270.00100 * 7 6 5 9 9 H 1.07991 * 120.00326 * 142.46211 * 8 7 6 10 10 C 1.38813 * 119.99366 * 322.46485 * 8 7 6 11 11 N 1.31615 * 120.00428 * 338.28209 * 10 8 7 12 12 Si 1.86803 * 119.99578 * 158.28467 * 10 8 7 13 13 H 1.48500 * 109.46977 * 90.00074 * 12 10 8 14 14 H 1.48504 * 109.47229 * 209.99477 * 12 10 8 15 15 H 1.48493 * 109.47198 * 330.00117 * 12 10 8 16 16 C 1.46499 * 119.99810 * 89.99416 * 7 6 5 17 17 H 1.08996 * 109.47293 * 354.60822 * 16 7 6 18 18 C 1.53000 * 109.47100 * 234.60405 * 16 7 6 19 19 C 1.50705 * 109.46787 * 114.60817 * 16 7 6 20 20 O 1.21279 * 120.00180 * 359.97438 * 19 16 7 21 21 N 1.34776 * 119.99736 * 180.02562 * 19 16 7 22 22 C 1.46497 * 120.00082 * 179.97438 * 21 19 16 23 23 C 1.50699 * 109.47559 * 179.97438 * 22 21 19 24 24 C 1.38231 * 120.00215 * 269.72723 * 23 22 21 25 25 C 1.38236 * 120.00352 * 179.76183 * 24 23 22 26 26 C 1.38242 * 119.99597 * 0.50719 * 25 24 23 27 27 C 1.38235 * 120.00029 * 359.74913 * 26 25 24 28 28 C 1.38232 * 119.99894 * 89.99703 * 23 22 21 29 29 H 1.09000 * 109.46972 * 59.99978 * 1 2 3 30 30 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46799 * 299.99980 * 1 2 3 32 32 H 1.08994 * 109.47305 * 59.99839 * 5 3 2 33 33 H 1.09006 * 109.46723 * 300.00179 * 5 3 2 34 34 H 1.08998 * 109.47483 * 60.00145 * 6 5 3 35 35 H 1.08997 * 109.47447 * 299.99425 * 6 5 3 36 36 H 0.97003 * 120.00268 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.47761 * 294.26436 * 18 16 7 38 38 H 1.09000 * 109.47299 * 54.26888 * 18 16 7 39 39 H 1.09003 * 109.46695 * 174.26146 * 18 16 7 40 40 H 0.97005 * 120.00448 * 359.97438 * 21 19 16 41 41 H 1.09000 * 109.46781 * 300.00121 * 22 21 19 42 42 H 1.09005 * 109.46834 * 59.99781 * 22 21 19 43 43 H 1.08003 * 119.99871 * 0.02562 * 24 23 22 44 44 H 1.07998 * 120.00349 * 180.22766 * 25 24 23 45 45 H 1.07998 * 119.99746 * 179.71638 * 26 25 24 46 46 H 1.07998 * 120.00144 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.99980 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8188 0.0002 8 6 6.1470 2.8540 1.1861 9 1 7.0878 2.3327 1.2827 10 6 5.6307 3.5598 2.2642 11 7 4.7527 4.5195 2.0629 12 14 6.1820 3.1475 4.0007 13 1 7.3693 3.9678 4.3509 14 1 5.0802 3.4399 4.9525 15 1 6.5349 1.7072 4.0792 16 6 6.1946 2.8576 -1.2685 17 1 5.4963 2.7247 -2.0947 18 6 7.2335 1.7346 -1.2929 19 6 6.8895 4.1878 -1.4071 20 8 6.7837 5.0213 -0.5325 21 7 7.6276 4.4514 -2.5035 22 6 8.3026 5.7445 -2.6385 23 6 9.0552 5.7846 -3.9436 24 6 10.3696 5.3601 -3.9968 25 6 11.0585 5.3922 -5.1949 26 6 10.4360 5.8587 -6.3376 27 6 9.1232 6.2882 -6.2833 28 6 8.4328 6.2511 -5.0863 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9558 0.7809 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2356 0.8906 35 1 3.6101 3.2367 -0.8893 36 1 4.3917 5.0124 2.8163 37 1 7.9900 1.9228 -0.5311 38 1 6.7436 0.7821 -1.0910 39 1 7.7069 1.6989 -2.2741 40 1 7.7120 3.7849 -3.2032 41 1 7.5623 6.5444 -2.6209 42 1 9.0012 5.8777 -1.8124 43 1 10.8572 4.9993 -3.1031 44 1 12.0843 5.0571 -5.2372 45 1 10.9756 5.8881 -7.2727 46 1 8.6370 6.6531 -7.1760 47 1 7.4073 6.5873 -5.0437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879476177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -92.085868 kcal Electronic energy + Delta-G solvation = -28703.036917 eV Core-core repulsion = 24658.015951 eV Total energy + Delta-G solvation = -4045.020966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38925 -40.73706 -39.86512 -37.82700 -37.18397 -35.64866 -33.89259 -33.17303 -32.03623 -31.77647 -30.14850 -28.46838 -27.16542 -26.54964 -24.71832 -23.44439 -23.17244 -22.12393 -21.46846 -20.93520 -18.98192 -18.41976 -17.70060 -17.54582 -17.41404 -17.18269 -17.02527 -16.44421 -16.34925 -15.82485 -15.64930 -15.51311 -14.98012 -14.72097 -14.41983 -14.37441 -14.24678 -13.84941 -13.76509 -13.51609 -13.44928 -13.36210 -13.02840 -12.89883 -12.85392 -12.69662 -12.52624 -12.41878 -12.00616 -11.94274 -11.89701 -11.81308 -11.74362 -11.48197 -11.41161 -10.52645 -10.37258 -9.86798 -9.79384 -9.69438 -8.50544 -7.72500 -5.33112 0.34762 0.50969 1.27688 1.45671 1.47662 1.56268 1.85114 2.13170 2.48335 2.57352 3.01146 3.40701 3.61967 3.73561 3.95326 4.07253 4.17199 4.23742 4.32267 4.32934 4.36146 4.38194 4.39520 4.47858 4.48907 4.62638 4.67686 4.72585 4.79083 4.80234 4.84684 5.01128 5.08160 5.17972 5.18525 5.23153 5.44842 5.54395 5.56709 5.62959 5.70233 5.70628 5.77687 5.86611 6.10885 6.50531 6.84007 6.87914 7.23806 7.72863 7.91991 8.41420 9.26106 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002998 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.181215 B = 9336.463507 C =10948.964227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.467 3.533 4 O -0.545 6.545 5 C -0.115 4.115 6 C 0.167 3.833 7 N -0.565 5.565 8 C -0.246 4.246 9 H 0.063 0.937 10 C -0.030 4.030 11 N -0.903 5.903 12 Si 0.943 3.057 13 H -0.296 1.296 14 H -0.298 1.298 15 H -0.258 1.258 16 C 0.142 3.858 17 H 0.097 0.903 18 C -0.133 4.133 19 C 0.478 3.522 20 O -0.549 6.549 21 N -0.724 5.724 22 C 0.166 3.834 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.241 0.759 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.407 0.593 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 -7.213 -18.121 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C 0.311 3.689 4 O -0.435 6.435 5 C -0.155 4.155 6 C 0.040 3.960 7 N -0.284 5.284 8 C -0.377 4.377 9 H 0.081 0.919 10 C -0.229 4.229 11 N -0.545 5.545 12 Si 0.771 3.229 13 H -0.223 1.223 14 H -0.225 1.225 15 H -0.182 1.182 16 C 0.031 3.969 17 H 0.115 0.885 18 C -0.192 4.192 19 C 0.263 3.737 20 O -0.423 6.423 21 N -0.381 5.381 22 C 0.042 3.958 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.142 4.142 28 C -0.133 4.133 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.654 -6.208 -17.324 19.252 hybrid contribution -0.222 0.545 1.218 1.352 sum 5.432 -5.663 -16.106 17.916 Atomic orbital electron populations 1.23516 0.75390 1.05604 1.02152 1.86529 1.24690 1.32898 1.83966 1.24371 0.92837 0.80945 0.70732 1.90643 1.68134 1.37713 1.46991 1.22042 0.84907 1.02347 1.06203 1.20457 0.83472 0.91312 1.00782 1.43847 1.00894 1.82974 1.00674 1.18941 1.05900 1.24408 0.88409 0.91947 1.25847 1.00093 0.94834 1.02094 1.70242 1.33932 1.20791 1.29580 0.85686 0.76683 0.78816 0.81676 1.22303 1.22450 1.18194 1.20913 0.94840 0.90523 0.90595 0.88537 1.21934 0.97948 0.97686 1.01660 1.22839 0.78644 0.91444 0.80794 1.90784 1.61061 1.49200 1.41297 1.46251 1.52045 1.17347 1.22422 1.19932 0.94754 0.86650 0.94416 1.19794 0.95096 1.01904 0.94142 1.21242 0.93686 0.99062 0.99102 1.21449 1.00953 0.99537 0.92214 1.21558 0.94988 0.97557 0.99311 1.21442 0.95212 0.99731 0.97834 1.21240 1.00251 0.99159 0.92609 0.92016 0.84598 0.92865 0.85988 0.87851 0.92169 0.95979 0.95027 0.94505 0.90776 0.89873 0.75663 0.93269 0.93118 0.85855 0.83770 0.83392 0.83849 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.91 10.57 -51.43 -0.54 -11.45 16 3 C 0.47 17.15 7.96 71.24 0.57 17.72 16 4 O -0.54 -24.00 15.73 21.97 0.35 -23.66 16 5 C -0.12 -4.19 6.13 29.85 0.18 -4.01 16 6 C 0.17 7.88 4.54 86.38 0.39 8.27 16 7 N -0.57 -26.89 2.11 -682.21 -1.44 -28.33 16 8 C -0.25 -13.23 7.73 84.03 0.65 -12.58 16 9 H 0.06 3.31 6.82 -2.92 -0.02 3.29 16 10 C -0.03 -1.75 4.95 84.86 0.42 -1.33 16 11 N -0.90 -56.73 11.49 21.65 0.25 -56.48 16 12 Si 0.94 46.29 29.61 68.60 2.03 48.32 16 13 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 14 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C 0.14 5.40 3.16 44.25 0.14 5.54 16 17 H 0.10 3.15 7.84 -2.39 -0.02 3.14 16 18 C -0.13 -3.97 8.77 71.98 0.63 -3.34 16 19 C 0.48 20.17 7.06 87.66 0.62 20.79 16 20 O -0.55 -30.68 15.52 -3.03 -0.05 -30.73 16 21 N -0.72 -22.63 5.45 -466.79 -2.55 -25.18 16 22 C 0.17 5.09 5.80 85.63 0.50 5.59 16 23 C -0.11 -2.54 5.25 -19.87 -0.10 -2.65 16 24 C -0.11 -2.29 9.70 22.27 0.22 -2.07 16 25 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 26 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 27 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 28 C -0.11 -2.34 9.70 22.27 0.22 -2.13 16 29 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 34 H 0.06 3.47 5.48 -2.39 -0.01 3.46 16 35 H 0.02 1.05 7.93 -2.39 -0.02 1.03 16 36 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.04 1.27 7.13 -2.39 -0.02 1.25 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 1.79 7.73 -2.39 -0.02 1.77 16 40 H 0.41 9.82 8.00 -92.70 -0.74 9.08 16 41 H 0.05 1.67 8.09 -2.39 -0.02 1.65 16 42 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 43 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -80.94 397.77 4.57 -76.37 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.23 Total: 24.46 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 6.29 Total: 26.68 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -3.74 Total: -109.99 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -0.24 Total: -65.84 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -80.94 4.57 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.715 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds