Wall clock time and date at job start Tue Mar 31 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00273 * 2 1 4 4 O 1.20833 * 119.99738 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46802 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46944 * 180.02562 * 6 5 3 8 8 C 1.36929 * 120.00032 * 264.51977 * 7 6 5 9 9 H 1.08004 * 119.99898 * 147.13649 * 8 7 6 10 10 C 1.38818 * 120.00248 * 327.14206 * 8 7 6 11 11 N 1.31617 * 119.99313 * 336.77578 * 10 8 7 12 12 Si 1.86801 * 119.99942 * 156.77534 * 10 8 7 13 13 H 1.48497 * 109.47211 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46785 * 120.00305 * 12 10 8 15 15 H 1.48498 * 109.46672 * 239.99672 * 12 10 8 16 16 C 1.46501 * 119.99676 * 84.51845 * 7 6 5 17 17 H 1.08994 * 109.47333 * 359.97438 * 16 7 6 18 18 C 1.52999 * 109.47092 * 120.00314 * 16 7 6 19 19 C 1.50710 * 109.46890 * 240.00075 * 16 7 6 20 20 O 1.21276 * 120.00247 * 0.02562 * 19 16 7 21 21 N 1.34778 * 119.99807 * 180.02562 * 19 16 7 22 22 C 1.46499 * 119.99958 * 179.97438 * 21 19 16 23 23 C 1.50694 * 109.47195 * 180.02562 * 22 21 19 24 24 C 1.38243 * 119.99912 * 269.72700 * 23 22 21 25 25 C 1.38239 * 119.99873 * 179.76522 * 24 23 22 26 26 C 1.38234 * 119.99820 * 0.48528 * 25 24 23 27 27 C 1.38237 * 120.00056 * 359.79003 * 26 25 24 28 28 C 1.38225 * 120.00151 * 359.95258 * 27 26 25 29 29 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47393 * 300.00196 * 1 2 3 31 31 H 1.08999 * 109.46952 * 60.00149 * 1 2 3 32 32 H 1.09005 * 109.46637 * 60.00472 * 5 3 2 33 33 H 1.08995 * 109.47233 * 299.99859 * 5 3 2 34 34 H 1.08994 * 109.47198 * 60.00657 * 6 5 3 35 35 H 1.08995 * 109.47397 * 300.00109 * 6 5 3 36 36 H 0.97004 * 119.99560 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46894 * 179.97438 * 18 16 7 38 38 H 1.09003 * 109.46868 * 299.99695 * 18 16 7 39 39 H 1.08997 * 109.47130 * 60.00039 * 18 16 7 40 40 H 0.97003 * 119.99808 * 0.02562 * 21 19 16 41 41 H 1.08994 * 109.46943 * 60.00316 * 22 21 19 42 42 H 1.09004 * 109.46770 * 300.00123 * 22 21 19 43 43 H 1.07994 * 119.99591 * 359.97438 * 24 23 22 44 44 H 1.07994 * 119.99876 * 180.25103 * 25 24 23 45 45 H 1.07998 * 119.99578 * 179.76835 * 26 25 24 46 46 H 1.08001 * 119.99242 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99989 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1410 2.9683 1.1801 9 1 7.1162 2.5207 1.3033 10 6 5.5747 3.6951 2.2184 11 7 4.6527 4.5988 1.9627 12 14 6.1214 3.3904 3.9785 13 1 7.1618 2.3310 3.9973 14 1 6.6796 4.6433 4.5473 15 1 4.9567 2.9543 4.7900 16 6 6.2009 2.7354 -1.2632 17 1 5.4978 2.6184 -2.0877 18 6 7.0147 4.0154 -1.4639 19 6 7.1307 1.5499 -1.2245 20 8 7.1725 0.8439 -0.2393 21 7 7.9157 1.2743 -2.2848 22 6 8.8199 0.1222 -2.2470 23 6 9.5796 0.0371 -3.5457 24 6 9.0684 -0.6985 -4.5986 25 6 9.7630 -0.7726 -5.7915 26 6 10.9735 -0.1194 -5.9281 27 6 11.4874 0.6115 -4.8733 28 6 10.7904 0.6900 -3.6823 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7805 -0.8893 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2367 0.8893 35 1 3.6108 3.2356 -0.8906 36 1 4.2567 5.1065 2.6883 37 1 7.5640 3.9531 -2.4033 38 1 6.3422 4.8728 -1.4918 39 1 7.7180 4.1318 -0.6393 40 1 7.8825 1.8392 -3.0727 41 1 8.2404 -0.7898 -2.1043 42 1 9.5228 0.2390 -1.4222 43 1 8.1248 -1.2125 -4.4903 44 1 9.3616 -1.3439 -6.6154 45 1 11.5179 -0.1804 -6.8589 46 1 12.4335 1.1215 -4.9801 47 1 11.1921 1.2607 -2.8581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879476178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:39 Heat of formation + Delta-G solvation = -73.250562 kcal Electronic energy + Delta-G solvation = -28827.856751 eV Core-core repulsion = 24783.652545 eV Total energy + Delta-G solvation = -4044.204206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92157 -39.69449 -38.80284 -36.30229 -35.61232 -34.43741 -32.23893 -31.47530 -31.08590 -30.97355 -28.60223 -27.20553 -26.07441 -24.63078 -23.43830 -22.75139 -21.71805 -21.12333 -19.94655 -19.41279 -17.50417 -17.16126 -16.64081 -16.11645 -16.01088 -15.71251 -15.57079 -15.48711 -14.94360 -14.65862 -14.33323 -13.89894 -13.66588 -13.52520 -13.28714 -13.18006 -12.98264 -12.74726 -12.56045 -12.28930 -12.08436 -11.97082 -11.67975 -11.46715 -11.24804 -11.19696 -11.16401 -10.95533 -10.81915 -10.53344 -10.46077 -10.06667 -9.96519 -9.84393 -9.66800 -9.22496 -9.11916 -8.77969 -8.60090 -8.41712 -6.68569 -5.77043 -3.26576 1.08453 1.20791 2.78074 3.19876 3.40875 3.43757 3.47088 3.51216 3.57687 3.95023 4.54320 4.59475 4.69181 4.81122 4.93811 5.20148 5.26048 5.29530 5.30920 5.35344 5.36067 5.50429 5.53603 5.59540 5.72736 5.77610 5.87705 5.90156 5.95130 6.00026 6.04098 6.24565 6.25159 6.30613 6.37295 6.46887 6.49180 6.68388 6.78578 6.81033 6.86995 7.03665 7.08325 7.73839 7.95805 8.03111 8.28962 8.50559 9.00306 9.19581 9.80291 10.32473 11.26140 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.003272 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.423021 B = 8555.766739 C =10452.133369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.461 3.539 4 O -0.508 6.508 5 C -0.130 4.130 6 C 0.156 3.844 7 N -0.555 5.555 8 C -0.242 4.242 9 H 0.073 0.927 10 C 0.006 3.994 11 N -0.886 5.886 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.289 1.289 16 C 0.153 3.847 17 H 0.075 0.925 18 C -0.142 4.142 19 C 0.492 3.508 20 O -0.513 6.513 21 N -0.741 5.741 22 C 0.160 3.840 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.102 4.102 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.034 0.966 36 H 0.254 0.746 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.394 0.606 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -9.121 -15.166 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 C 0.304 3.696 4 O -0.395 6.395 5 C -0.171 4.171 6 C 0.029 3.971 7 N -0.272 5.272 8 C -0.372 4.372 9 H 0.090 0.910 10 C -0.193 4.193 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.218 1.218 15 H -0.215 1.215 16 C 0.041 3.959 17 H 0.093 0.907 18 C -0.202 4.202 19 C 0.277 3.723 20 O -0.386 6.386 21 N -0.397 5.397 22 C 0.037 3.963 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.120 4.120 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.359 -9.204 -14.249 17.789 hybrid contribution 0.054 -0.022 0.499 0.502 sum 5.413 -9.225 -13.750 17.420 Atomic orbital electron populations 1.23132 0.77839 1.02816 1.02180 1.86580 1.22445 1.34956 1.84698 1.24550 0.92833 0.80703 0.71527 1.90636 1.67365 1.36227 1.45236 1.22442 0.84392 1.05689 1.04554 1.20952 0.83223 0.88837 1.04054 1.43645 1.00785 1.81875 1.00914 1.19175 1.03211 1.25474 0.89304 0.90972 1.25067 0.99578 0.95522 0.99128 1.70016 1.30272 1.21633 1.30956 0.86355 0.78222 0.77728 0.85351 1.19946 1.21830 1.21550 1.20324 0.92965 0.91219 0.91378 0.90688 1.22018 1.00416 0.98029 0.99704 1.22577 0.80670 0.87202 0.81828 1.90664 1.66382 1.49889 1.31655 1.46411 1.43094 1.30569 1.19635 1.20072 0.92241 0.90567 0.93465 1.20032 0.95633 0.98416 0.95859 1.21145 0.99744 0.98486 0.92776 1.21157 0.95425 0.99987 0.97599 1.21182 0.96170 0.97591 0.98798 1.21165 1.00047 0.99462 0.93425 1.21164 0.94502 0.98531 0.97845 0.88849 0.92254 0.92373 0.89981 0.87878 0.86611 0.94802 0.93603 0.94436 0.91771 0.91729 0.77204 0.91246 0.91184 0.85840 0.86063 0.86211 0.86029 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.29 10.56 -39.25 -0.41 -6.70 16 3 C 0.46 9.05 7.96 36.01 0.29 9.34 16 4 O -0.51 -11.19 15.73 -18.76 -0.30 -11.49 16 5 C -0.13 -2.65 6.13 -27.88 -0.17 -2.82 16 6 C 0.16 3.65 4.47 -4.04 -0.02 3.63 16 7 N -0.55 -13.19 2.20 -166.97 -0.37 -13.56 16 8 C -0.24 -6.50 7.71 -15.06 -0.12 -6.61 16 9 H 0.07 2.05 6.70 -52.48 -0.35 1.70 16 10 C 0.01 0.18 4.90 -17.43 -0.09 0.09 16 11 N -0.89 -25.28 11.33 55.49 0.63 -24.65 16 12 Si 0.89 22.13 29.61 -169.99 -5.03 17.09 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 C 0.15 2.97 3.17 -69.08 -0.22 2.75 16 17 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 18 C -0.14 -2.55 9.06 37.16 0.34 -2.21 16 19 C 0.49 9.26 6.99 -10.98 -0.08 9.18 16 20 O -0.51 -11.84 14.63 5.56 0.08 -11.76 16 21 N -0.74 -10.51 5.44 -61.47 -0.33 -10.84 16 22 C 0.16 2.08 5.80 -5.20 -0.03 2.05 16 23 C -0.10 -1.06 5.25 -104.62 -0.55 -1.61 16 24 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 28 C -0.10 -1.02 9.70 -39.59 -0.38 -1.40 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.10 2.23 8.14 -51.93 -0.42 1.80 16 34 H 0.12 3.16 5.26 -51.93 -0.27 2.88 16 35 H 0.03 0.77 7.99 -51.93 -0.42 0.35 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.04 0.52 7.56 -51.93 -0.39 0.13 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 40 H 0.39 4.70 7.88 -40.82 -0.32 4.38 16 41 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -32.91 396.90 -8.48 -41.39 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.19 Total: 6.33 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.54 Total: 8.20 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.07 Total: -49.05 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.63 Total: -29.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.91 -8.48 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.861 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds