Wall clock time and date at job start Tue Mar 31 2020 18:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00273 * 2 1 4 4 O 1.20833 * 119.99738 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00176 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46802 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46944 * 180.02562 * 6 5 3 8 8 C 1.36929 * 120.00032 * 264.51977 * 7 6 5 9 9 H 1.08004 * 119.99898 * 147.13649 * 8 7 6 10 10 C 1.38818 * 120.00248 * 327.14206 * 8 7 6 11 11 N 1.31617 * 119.99313 * 336.77578 * 10 8 7 12 12 Si 1.86801 * 119.99942 * 156.77534 * 10 8 7 13 13 H 1.48497 * 109.47211 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46785 * 120.00305 * 12 10 8 15 15 H 1.48498 * 109.46672 * 239.99672 * 12 10 8 16 16 C 1.46501 * 119.99676 * 84.51845 * 7 6 5 17 17 H 1.08994 * 109.47333 * 359.97438 * 16 7 6 18 18 C 1.52999 * 109.47092 * 120.00314 * 16 7 6 19 19 C 1.50710 * 109.46890 * 240.00075 * 16 7 6 20 20 O 1.21276 * 120.00247 * 0.02562 * 19 16 7 21 21 N 1.34778 * 119.99807 * 180.02562 * 19 16 7 22 22 C 1.46499 * 119.99958 * 179.97438 * 21 19 16 23 23 C 1.50694 * 109.47195 * 180.02562 * 22 21 19 24 24 C 1.38243 * 119.99912 * 269.72700 * 23 22 21 25 25 C 1.38239 * 119.99873 * 179.76522 * 24 23 22 26 26 C 1.38234 * 119.99820 * 0.48528 * 25 24 23 27 27 C 1.38237 * 120.00056 * 359.79003 * 26 25 24 28 28 C 1.38225 * 120.00151 * 359.95258 * 27 26 25 29 29 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47393 * 300.00196 * 1 2 3 31 31 H 1.08999 * 109.46952 * 60.00149 * 1 2 3 32 32 H 1.09005 * 109.46637 * 60.00472 * 5 3 2 33 33 H 1.08995 * 109.47233 * 299.99859 * 5 3 2 34 34 H 1.08994 * 109.47198 * 60.00657 * 6 5 3 35 35 H 1.08995 * 109.47397 * 300.00109 * 6 5 3 36 36 H 0.97004 * 119.99560 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46894 * 179.97438 * 18 16 7 38 38 H 1.09003 * 109.46868 * 299.99695 * 18 16 7 39 39 H 1.08997 * 109.47130 * 60.00039 * 18 16 7 40 40 H 0.97003 * 119.99808 * 0.02562 * 21 19 16 41 41 H 1.08994 * 109.46943 * 60.00316 * 22 21 19 42 42 H 1.09004 * 109.46770 * 300.00123 * 22 21 19 43 43 H 1.07994 * 119.99591 * 359.97438 * 24 23 22 44 44 H 1.07994 * 119.99876 * 180.25103 * 25 24 23 45 45 H 1.07998 * 119.99578 * 179.76835 * 26 25 24 46 46 H 1.08001 * 119.99242 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99989 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1410 2.9683 1.1801 9 1 7.1162 2.5207 1.3033 10 6 5.5747 3.6951 2.2184 11 7 4.6527 4.5988 1.9627 12 14 6.1214 3.3904 3.9785 13 1 7.1618 2.3310 3.9973 14 1 6.6796 4.6433 4.5473 15 1 4.9567 2.9543 4.7900 16 6 6.2009 2.7354 -1.2632 17 1 5.4978 2.6184 -2.0877 18 6 7.0147 4.0154 -1.4639 19 6 7.1307 1.5499 -1.2245 20 8 7.1725 0.8439 -0.2393 21 7 7.9157 1.2743 -2.2848 22 6 8.8199 0.1222 -2.2470 23 6 9.5796 0.0371 -3.5457 24 6 9.0684 -0.6985 -4.5986 25 6 9.7630 -0.7726 -5.7915 26 6 10.9735 -0.1194 -5.9281 27 6 11.4874 0.6115 -4.8733 28 6 10.7904 0.6900 -3.6823 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9564 0.7805 -0.8893 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2367 0.8893 35 1 3.6108 3.2356 -0.8906 36 1 4.2567 5.1065 2.6883 37 1 7.5640 3.9531 -2.4033 38 1 6.3422 4.8728 -1.4918 39 1 7.7180 4.1318 -0.6393 40 1 7.8825 1.8392 -3.0727 41 1 8.2404 -0.7898 -2.1043 42 1 9.5228 0.2390 -1.4222 43 1 8.1248 -1.2125 -4.4903 44 1 9.3616 -1.3439 -6.6154 45 1 11.5179 -0.1804 -6.8589 46 1 12.4335 1.1215 -4.9801 47 1 11.1921 1.2607 -2.8581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879476178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:38 Heat of formation + Delta-G solvation = -92.828429 kcal Electronic energy + Delta-G solvation = -28828.705711 eV Core-core repulsion = 24783.652545 eV Total energy + Delta-G solvation = -4045.053166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44110 -40.84236 -39.91373 -37.87768 -37.22952 -35.73025 -33.94474 -33.25650 -32.08228 -31.76252 -30.20803 -28.51976 -27.15423 -26.49293 -24.95590 -23.43536 -23.16878 -22.13065 -21.51036 -20.99495 -19.08579 -18.55082 -17.73327 -17.58889 -17.45708 -17.24142 -16.97044 -16.48247 -16.38777 -15.83734 -15.75830 -15.50474 -15.06304 -14.73878 -14.67647 -14.26246 -14.13490 -13.84641 -13.72286 -13.68292 -13.48159 -13.40253 -13.15216 -13.03727 -12.91961 -12.75980 -12.61032 -12.33085 -11.95282 -11.92938 -11.91104 -11.85372 -11.78888 -11.57943 -11.46623 -10.64705 -10.44996 -9.93014 -9.79251 -9.70797 -8.63634 -7.83194 -5.34226 0.35255 0.52440 1.21076 1.41152 1.46730 1.57517 1.81380 1.94847 2.37779 2.55845 3.00251 3.29654 3.56594 3.73566 3.97163 4.01195 4.16643 4.19785 4.26736 4.32806 4.33319 4.33939 4.39138 4.40316 4.44734 4.62315 4.63992 4.68520 4.76941 4.77656 4.81738 4.94268 5.09769 5.14236 5.19347 5.19451 5.39144 5.54649 5.57090 5.60452 5.64666 5.70795 5.77355 5.85024 6.11970 6.46808 6.76555 6.78664 7.16601 7.54971 7.84915 8.31984 9.16371 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010112 B = 0.003272 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.423021 B = 8555.766739 C =10452.133369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.469 3.531 4 O -0.536 6.536 5 C -0.119 4.119 6 C 0.161 3.839 7 N -0.570 5.570 8 C -0.230 4.230 9 H 0.053 0.947 10 C -0.038 4.038 11 N -0.912 5.912 12 Si 0.941 3.059 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.292 1.292 16 C 0.145 3.855 17 H 0.103 0.897 18 C -0.131 4.131 19 C 0.497 3.503 20 O -0.562 6.562 21 N -0.719 5.719 22 C 0.165 3.835 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.134 0.866 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.409 0.591 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.128 0.872 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 -10.479 -17.937 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.313 3.687 4 O -0.425 6.425 5 C -0.159 4.159 6 C 0.035 3.965 7 N -0.288 5.288 8 C -0.360 4.360 9 H 0.071 0.929 10 C -0.235 4.235 11 N -0.556 5.556 12 Si 0.771 3.229 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.219 1.219 16 C 0.035 3.965 17 H 0.120 0.880 18 C -0.190 4.190 19 C 0.283 3.717 20 O -0.439 6.439 21 N -0.374 5.374 22 C 0.042 3.958 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.145 4.145 28 C -0.132 4.132 29 H 0.153 0.847 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.245 0.755 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.036 -10.584 -17.087 20.986 hybrid contribution -0.121 0.288 1.192 1.232 sum 5.915 -10.296 -15.895 19.840 Atomic orbital electron populations 1.23539 0.75131 1.05630 1.02383 1.86538 1.24973 1.33054 1.83952 1.24209 0.92464 0.81061 0.70921 1.90629 1.67867 1.37332 1.46715 1.22108 0.85442 1.03542 1.04787 1.20674 0.83185 0.90377 1.02295 1.43723 1.01022 1.82351 1.01703 1.19065 1.02374 1.23830 0.90770 0.92912 1.25552 1.00360 0.95993 1.01578 1.70122 1.31626 1.22747 1.31153 0.85608 0.77472 0.77349 0.82478 1.20297 1.21541 1.21861 1.20594 0.93633 0.92072 0.90240 0.87956 1.21899 0.99602 0.96645 1.00903 1.22247 0.80920 0.86517 0.82057 1.90650 1.68073 1.51445 1.33693 1.46119 1.41757 1.30783 1.18734 1.20031 0.91660 0.89435 0.94676 1.19807 0.96099 1.00158 0.95035 1.21274 1.00217 0.98386 0.93012 1.21455 0.95430 0.99849 0.97651 1.21550 0.96009 0.96422 0.99558 1.21435 1.00663 0.99443 0.92937 1.21262 0.94513 0.98789 0.98623 0.84745 0.92624 0.91703 0.87903 0.89415 0.90384 0.94502 0.94180 0.89850 0.93069 0.94567 0.75470 0.91848 0.92594 0.85364 0.83874 0.83691 0.84117 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -12.00 10.56 -51.38 -0.54 -12.55 16 3 C 0.47 18.28 7.96 71.24 0.57 18.85 16 4 O -0.54 -23.73 15.73 21.94 0.35 -23.38 16 5 C -0.12 -4.84 6.13 29.85 0.18 -4.65 16 6 C 0.16 7.69 4.47 86.38 0.39 8.07 16 7 N -0.57 -27.52 2.20 -682.18 -1.50 -29.02 16 8 C -0.23 -12.68 7.71 84.04 0.65 -12.04 16 9 H 0.05 3.11 6.70 -2.91 -0.02 3.09 16 10 C -0.04 -2.17 4.90 84.86 0.42 -1.75 16 11 N -0.91 -53.73 11.33 21.65 0.25 -53.49 16 12 Si 0.94 46.86 29.61 68.60 2.03 48.89 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 16 C 0.15 5.53 3.17 44.25 0.14 5.67 16 17 H 0.10 3.31 7.87 -2.39 -0.02 3.30 16 18 C -0.13 -4.60 9.06 71.98 0.65 -3.95 16 19 C 0.50 18.50 6.99 87.66 0.61 19.11 16 20 O -0.56 -26.34 14.63 -3.02 -0.04 -26.39 16 21 N -0.72 -19.48 5.44 -466.79 -2.54 -22.02 16 22 C 0.17 4.20 5.80 85.63 0.50 4.69 16 23 C -0.11 -2.21 5.25 -19.87 -0.10 -2.31 16 24 C -0.11 -1.91 9.70 22.27 0.22 -1.69 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 27 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 28 C -0.11 -2.08 9.70 22.27 0.22 -1.86 16 29 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 33 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.08 4.41 5.26 -2.39 -0.01 4.40 16 35 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.08 2.10 7.56 -2.39 -0.02 2.08 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.46 7.66 -2.39 -0.02 1.44 16 40 H 0.41 8.77 7.88 -92.71 -0.73 8.04 16 41 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 42 H 0.06 1.59 8.09 -2.38 -0.02 1.57 16 43 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 46 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 47 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -74.07 396.90 4.53 -69.54 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.24 Total: 22.93 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.30 Total: 25.48 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.80 Total: -104.53 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -0.24 Total: -62.31 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.07 4.53 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879476178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.286 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds