Wall clock time and date at job start Tue Mar 31 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 N 1.46889 * 109.47629 * 120.00531 * 2 1 3 5 5 C 1.46905 * 111.00124 * 275.00302 * 4 2 1 6 6 H 1.08996 * 109.64309 * 34.57205 * 5 4 2 7 7 C 1.53028 * 109.63731 * 273.94406 * 5 4 2 8 8 C 1.50068 * 110.14481 * 190.88013 * 7 5 4 9 9 C 1.29444 * 124.07835 * 17.12444 * 8 7 5 10 10 C 1.50064 * 124.07240 * 359.53386 * 9 8 7 11 11 C 1.53019 * 110.15028 * 17.13152 * 10 9 8 12 12 H 1.09002 * 109.81495 * 70.34780 * 11 10 9 13 13 C 1.53004 * 109.64665 * 190.87642 * 11 10 9 14 14 F 1.39898 * 109.47089 * 178.94565 * 13 11 10 15 15 F 1.39901 * 109.46791 * 298.94838 * 13 11 10 16 16 F 1.39901 * 109.46652 * 58.94225 * 13 11 10 17 17 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 18 18 O 1.21281 * 119.99699 * 239.99570 * 17 2 1 19 19 N 1.34773 * 120.00080 * 60.00061 * 17 2 1 20 20 C 1.46499 * 120.00036 * 359.72107 * 19 17 2 21 21 C 1.46506 * 119.99969 * 180.02562 * 19 17 2 22 22 C 1.50703 * 109.46877 * 269.72057 * 21 19 17 23 23 H 1.08005 * 119.99817 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00081 * 179.97438 * 22 21 19 25 25 N 1.31510 * 120.00254 * 180.02562 * 24 22 21 26 26 Si 1.86811 * 119.99850 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46778 * 89.99559 * 26 24 22 28 28 H 1.48493 * 109.46886 * 209.99446 * 26 24 22 29 29 H 1.48492 * 109.47026 * 329.99859 * 26 24 22 30 30 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 31 31 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 33 33 H 1.00899 * 111.00481 * 151.04385 * 4 2 1 34 34 H 1.09000 * 109.35713 * 311.08238 * 7 5 4 35 35 H 1.08998 * 109.36044 * 70.66656 * 7 5 4 36 36 H 1.08004 * 117.96172 * 197.10684 * 8 7 5 37 37 H 1.08002 * 117.96567 * 179.55814 * 9 8 7 38 38 H 1.08997 * 109.35996 * 256.92178 * 10 9 8 39 39 H 1.09000 * 109.35898 * 137.33738 * 10 9 8 40 40 H 1.09003 * 109.47269 * 270.27384 * 20 19 17 41 41 H 1.08994 * 109.47173 * 30.28203 * 20 19 17 42 42 H 1.09005 * 109.47077 * 150.28374 * 20 19 17 43 43 H 1.09000 * 109.46803 * 29.71536 * 21 19 17 44 44 H 1.09000 * 109.47214 * 149.72329 * 21 19 17 45 45 H 0.97008 * 120.00053 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1992 5 6 2.0826 0.2224 2.3468 6 1 1.2632 0.9389 2.2895 7 6 3.4212 0.9639 2.3408 8 6 3.6118 1.6971 3.6362 9 6 2.9383 1.4521 4.7141 10 6 1.8657 0.4076 4.8162 11 6 1.9773 -0.5781 3.6510 12 1 2.8663 -1.1966 3.7741 13 6 0.7334 -1.4680 3.6092 14 9 0.8281 -2.3513 2.5285 15 9 0.6408 -2.1963 4.8001 16 9 -0.4061 -0.6700 3.4609 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7067 -0.2497 -2.4546 20 6 0.8595 0.9378 -2.5889 21 6 2.1945 -0.9406 -3.6509 22 6 3.5190 -0.3530 -4.0653 23 1 3.9540 0.4540 -3.4944 24 6 4.1758 -0.8464 -5.1726 25 7 5.3318 -0.3340 -5.5339 26 14 3.4236 -2.2427 -6.1596 27 1 2.5594 -1.6829 -7.2297 28 1 4.5055 -3.0552 -6.7715 29 1 2.6079 -3.0998 -5.2623 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.9174 -1.1205 1.0285 34 1 4.2311 0.2464 2.2092 35 1 3.4356 1.6770 1.5165 36 1 4.3576 2.4775 3.6714 37 1 3.1619 2.0361 5.5947 38 1 0.8884 0.8894 4.7896 39 1 1.9749 -0.1317 5.7572 40 1 -0.1874 0.6358 -2.6194 41 1 1.0224 1.5985 -1.7375 42 1 1.1130 1.4628 -3.5100 43 1 2.3200 -2.0011 -3.4322 44 1 1.4741 -0.8191 -4.4598 45 1 5.7938 -0.6809 -6.3132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879666536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:24 Heat of formation + Delta-G solvation = -160.155608 kcal Electronic energy + Delta-G solvation = -30859.542665 eV Core-core repulsion = 26269.713233 eV Total energy + Delta-G solvation = -4589.829432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92980 -47.51124 -47.23075 -39.93553 -38.85529 -35.42188 -34.98331 -32.68369 -32.17690 -31.24273 -28.68520 -27.71964 -26.23377 -25.73294 -24.14819 -22.90664 -21.77507 -21.12969 -19.13898 -18.58083 -18.11623 -17.77296 -17.65906 -16.97463 -16.58292 -15.97935 -15.61320 -15.09122 -14.69101 -14.57601 -14.48638 -14.13845 -13.94829 -13.86227 -13.70831 -13.54512 -13.50777 -13.38071 -13.36781 -13.04029 -12.82075 -12.64669 -12.39950 -12.30527 -12.10282 -11.91229 -11.69326 -11.65268 -11.26761 -11.20478 -11.02789 -10.92038 -10.88133 -10.54061 -10.11294 -9.57459 -9.34021 -8.99521 -8.61832 -8.45938 -7.74013 -6.11583 -4.10606 1.95556 2.83988 3.25718 3.28572 3.34024 3.39377 3.53897 3.79978 3.93359 3.96591 4.30925 4.38041 4.59659 4.62540 4.70010 4.87157 4.90573 4.93809 5.04036 5.10863 5.18710 5.23416 5.32796 5.35707 5.45333 5.52403 5.61408 5.67015 5.71454 5.77882 5.84729 5.89561 6.10143 6.25587 6.33937 6.58694 6.60959 6.84453 6.98678 7.28736 7.37846 7.58266 8.20140 8.43457 8.87765 8.93233 9.48856 11.01691 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.003214 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.259589 B = 8710.204814 C = 9228.858900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.665 5.665 5 C 0.091 3.909 6 H 0.094 0.906 7 C -0.122 4.122 8 C -0.143 4.143 9 C -0.157 4.157 10 C -0.088 4.088 11 C -0.123 4.123 12 H 0.114 0.886 13 C 0.462 3.538 14 F -0.154 7.154 15 F -0.196 7.196 16 F -0.188 7.188 17 C 0.508 3.492 18 O -0.532 6.532 19 N -0.594 5.594 20 C 0.080 3.920 21 C 0.216 3.784 22 C -0.529 4.529 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.898 5.898 26 Si 0.875 3.125 27 H -0.275 1.275 28 H -0.284 1.284 29 H -0.263 1.263 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.362 0.638 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 5.117 20.839 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 H 0.085 0.915 4 N -0.299 5.299 5 C -0.020 4.020 6 H 0.112 0.888 7 C -0.161 4.161 8 C -0.162 4.162 9 C -0.175 4.175 10 C -0.125 4.125 11 C -0.143 4.143 12 H 0.132 0.868 13 C 0.408 3.592 14 F -0.135 7.135 15 F -0.177 7.177 16 F -0.170 7.170 17 C 0.294 3.706 18 O -0.409 6.409 19 N -0.326 5.326 20 C -0.063 4.063 21 C 0.095 3.905 22 C -0.568 4.568 23 H 0.091 0.909 24 C -0.130 4.130 25 N -0.536 5.536 26 Si 0.702 3.298 27 H -0.201 1.201 28 H -0.209 1.209 29 H -0.188 1.188 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.186 0.814 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.282 4.274 20.861 23.647 hybrid contribution 0.459 -0.106 -0.856 0.977 sum -9.823 4.168 20.004 22.672 Atomic orbital electron populations 1.22015 0.92722 1.03461 1.02345 1.21407 0.97264 0.96466 0.89160 0.91506 1.60597 1.35912 1.30384 1.03022 1.21645 0.97997 0.93108 0.89219 0.88804 1.21255 0.98011 1.00042 0.96770 1.22042 0.99937 0.99914 0.94290 1.21862 0.97945 0.99210 0.98459 1.20483 0.99591 0.95249 0.97167 1.22539 0.95994 0.97495 0.98278 0.86750 1.20256 0.85263 0.80153 0.73552 1.93304 1.96064 1.69583 1.54595 1.93146 1.96764 1.79580 1.48256 1.93123 1.54533 1.73809 1.95515 1.20239 0.80832 0.85147 0.84410 1.90664 1.37872 1.26484 1.85858 1.47746 1.49739 1.28453 1.06658 1.21844 0.93614 0.88008 1.02866 1.19679 0.95034 0.94083 0.81693 1.21309 1.03405 1.20011 1.12054 0.90881 1.24851 0.94650 0.96424 0.97044 1.69894 1.15012 1.42273 1.26430 0.86858 0.79402 0.83004 0.80579 1.20086 1.20921 1.18772 0.90831 0.91509 0.92233 0.81441 0.89712 0.90005 0.87396 0.87144 0.89550 0.89592 0.93137 0.92053 0.90616 0.94012 0.95635 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.03 37.16 0.34 -1.48 16 2 C 0.07 1.00 2.04 -68.87 -0.14 0.86 16 3 H 0.07 0.87 6.59 -51.93 -0.34 0.52 16 4 N -0.66 -8.96 3.74 -100.73 -0.38 -9.33 16 5 C 0.09 0.94 1.64 -67.50 -0.11 0.83 16 6 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 7 C -0.12 -1.18 5.42 -28.17 -0.15 -1.33 16 8 C -0.14 -1.17 9.80 -35.90 -0.35 -1.52 16 9 C -0.16 -1.15 9.80 -35.90 -0.35 -1.51 16 10 C -0.09 -0.66 5.20 -28.18 -0.15 -0.81 16 11 C -0.12 -1.16 2.07 -90.41 -0.19 -1.35 16 12 H 0.11 1.06 8.13 -51.93 -0.42 0.63 16 13 C 0.46 5.29 2.67 37.16 0.10 5.39 16 14 F -0.15 -2.20 15.20 2.25 0.03 -2.17 16 15 F -0.20 -2.24 17.04 2.25 0.04 -2.20 16 16 F -0.19 -2.18 16.23 2.25 0.04 -2.15 16 17 C 0.51 10.04 7.10 -10.98 -0.08 9.96 16 18 O -0.53 -12.74 15.22 5.56 0.08 -12.65 16 19 N -0.59 -11.92 2.86 -182.95 -0.52 -12.44 16 20 C 0.08 1.19 8.80 59.85 0.53 1.71 16 21 C 0.22 5.23 4.23 -5.19 -0.02 5.21 16 22 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 23 H 0.07 2.27 8.06 -52.48 -0.42 1.84 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 25 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 26 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.26 -6.34 6.54 56.52 0.37 -5.98 16 30 H 0.07 0.81 4.51 -51.93 -0.23 0.58 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 33 H 0.36 5.53 7.03 -39.29 -0.28 5.26 16 34 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 36 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.09 0.64 7.49 -51.93 -0.39 0.25 16 39 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 41 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 42 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 43 H 0.04 1.10 6.47 -51.93 -0.34 0.77 16 44 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -33.21 363.19 -6.47 -39.68 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.32 Total: 3.10 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.02 Total: 2.59 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.13 Total: -48.48 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.21 -6.47 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879666536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.474 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds