Wall clock time and date at job start Tue Mar 31 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 N 1.46889 * 109.47629 * 120.00531 * 2 1 3 5 5 C 1.46905 * 111.00124 * 275.00302 * 4 2 1 6 6 H 1.08996 * 109.64309 * 34.57205 * 5 4 2 7 7 C 1.53028 * 109.63731 * 273.94406 * 5 4 2 8 8 C 1.50068 * 110.14481 * 190.88013 * 7 5 4 9 9 C 1.29444 * 124.07835 * 17.12444 * 8 7 5 10 10 C 1.50064 * 124.07240 * 359.53386 * 9 8 7 11 11 C 1.53019 * 110.15028 * 17.13152 * 10 9 8 12 12 H 1.09002 * 109.81495 * 70.34780 * 11 10 9 13 13 C 1.53004 * 109.64665 * 190.87642 * 11 10 9 14 14 F 1.39898 * 109.47089 * 178.94565 * 13 11 10 15 15 F 1.39901 * 109.46791 * 298.94838 * 13 11 10 16 16 F 1.39901 * 109.46652 * 58.94225 * 13 11 10 17 17 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 18 18 O 1.21281 * 119.99699 * 239.99570 * 17 2 1 19 19 N 1.34773 * 120.00080 * 60.00061 * 17 2 1 20 20 C 1.46499 * 120.00036 * 359.72107 * 19 17 2 21 21 C 1.46506 * 119.99969 * 180.02562 * 19 17 2 22 22 C 1.50703 * 109.46877 * 269.72057 * 21 19 17 23 23 H 1.08005 * 119.99817 * 0.02562 * 22 21 19 24 24 C 1.37871 * 120.00081 * 179.97438 * 22 21 19 25 25 N 1.31510 * 120.00254 * 180.02562 * 24 22 21 26 26 Si 1.86811 * 119.99850 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46778 * 89.99559 * 26 24 22 28 28 H 1.48493 * 109.46886 * 209.99446 * 26 24 22 29 29 H 1.48492 * 109.47026 * 329.99859 * 26 24 22 30 30 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 31 31 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 33 33 H 1.00899 * 111.00481 * 151.04385 * 4 2 1 34 34 H 1.09000 * 109.35713 * 311.08238 * 7 5 4 35 35 H 1.08998 * 109.36044 * 70.66656 * 7 5 4 36 36 H 1.08004 * 117.96172 * 197.10684 * 8 7 5 37 37 H 1.08002 * 117.96567 * 179.55814 * 9 8 7 38 38 H 1.08997 * 109.35996 * 256.92178 * 10 9 8 39 39 H 1.09000 * 109.35898 * 137.33738 * 10 9 8 40 40 H 1.09003 * 109.47269 * 270.27384 * 20 19 17 41 41 H 1.08994 * 109.47173 * 30.28203 * 20 19 17 42 42 H 1.09005 * 109.47077 * 150.28374 * 20 19 17 43 43 H 1.09000 * 109.46803 * 29.71536 * 21 19 17 44 44 H 1.09000 * 109.47214 * 149.72329 * 21 19 17 45 45 H 0.97008 * 120.00053 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 1.1992 5 6 2.0826 0.2224 2.3468 6 1 1.2632 0.9389 2.2895 7 6 3.4212 0.9639 2.3408 8 6 3.6118 1.6971 3.6362 9 6 2.9383 1.4521 4.7141 10 6 1.8657 0.4076 4.8162 11 6 1.9773 -0.5781 3.6510 12 1 2.8663 -1.1966 3.7741 13 6 0.7334 -1.4680 3.6092 14 9 0.8281 -2.3513 2.5285 15 9 0.6408 -2.1963 4.8001 16 9 -0.4061 -0.6700 3.4609 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7067 -0.2497 -2.4546 20 6 0.8595 0.9378 -2.5889 21 6 2.1945 -0.9406 -3.6509 22 6 3.5190 -0.3530 -4.0653 23 1 3.9540 0.4540 -3.4944 24 6 4.1758 -0.8464 -5.1726 25 7 5.3318 -0.3340 -5.5339 26 14 3.4236 -2.2427 -6.1596 27 1 2.5594 -1.6829 -7.2297 28 1 4.5055 -3.0552 -6.7715 29 1 2.6079 -3.0998 -5.2623 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.9174 -1.1205 1.0285 34 1 4.2311 0.2464 2.2092 35 1 3.4356 1.6770 1.5165 36 1 4.3576 2.4775 3.6714 37 1 3.1619 2.0361 5.5947 38 1 0.8884 0.8894 4.7896 39 1 1.9749 -0.1317 5.7572 40 1 -0.1874 0.6358 -2.6194 41 1 1.0224 1.5985 -1.7375 42 1 1.1130 1.4628 -3.5100 43 1 2.3200 -2.0011 -3.4322 44 1 1.4741 -0.8191 -4.4598 45 1 5.7938 -0.6809 -6.3132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879666536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:24 Heat of formation + Delta-G solvation = -181.613651 kcal Electronic energy + Delta-G solvation = -30860.473156 eV Core-core repulsion = 26269.713233 eV Total energy + Delta-G solvation = -4590.759922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.85982 -48.41624 -48.22654 -41.19949 -39.89214 -36.78347 -36.34941 -34.72641 -32.98116 -32.30835 -30.28710 -28.84451 -27.59942 -26.53642 -25.54705 -24.14392 -22.89992 -22.21039 -20.28324 -19.63499 -19.14683 -19.08445 -18.75068 -18.47789 -17.84282 -17.32448 -16.55290 -16.48620 -16.34933 -15.55542 -15.38498 -15.24053 -15.09211 -14.99404 -14.77467 -14.58246 -14.53960 -14.44828 -14.34833 -14.18874 -14.02595 -13.91618 -13.67496 -13.54640 -13.39197 -13.12802 -12.93735 -12.87304 -12.68539 -12.42548 -12.32904 -12.04128 -11.98179 -11.84120 -11.77004 -11.62100 -10.83049 -10.57382 -9.95424 -9.48494 -9.38371 -8.35271 -6.40171 1.31271 1.35968 1.36186 1.46750 1.76532 1.96906 2.20110 2.30486 2.86732 2.99101 3.00712 3.12471 3.36471 3.58041 3.81689 3.88960 3.91512 4.07252 4.14728 4.18449 4.23219 4.35559 4.38827 4.42136 4.61016 4.68647 4.73913 4.78345 4.81438 4.84122 4.88367 4.95477 4.99265 5.03831 5.10951 5.32904 5.45019 5.57875 5.66582 5.87472 5.98471 6.20673 6.22556 6.60669 6.68325 7.20265 7.38181 8.81486 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.003214 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.259589 B = 8710.204814 C = 9228.858900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.086 0.914 4 N -0.673 5.673 5 C 0.094 3.906 6 H 0.104 0.896 7 C -0.119 4.119 8 C -0.157 4.157 9 C -0.145 4.145 10 C -0.086 4.086 11 C -0.117 4.117 12 H 0.114 0.886 13 C 0.460 3.540 14 F -0.175 7.175 15 F -0.196 7.196 16 F -0.188 7.188 17 C 0.497 3.503 18 O -0.585 6.585 19 N -0.603 5.603 20 C 0.073 3.927 21 C 0.224 3.776 22 C -0.535 4.535 23 H 0.030 0.970 24 C 0.013 3.987 25 N -0.944 5.944 26 Si 0.946 3.054 27 H -0.250 1.250 28 H -0.282 1.282 29 H -0.258 1.258 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.018 0.982 44 H 0.049 0.951 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 6.018 22.012 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.103 0.897 4 N -0.307 5.307 5 C -0.016 4.016 6 H 0.122 0.878 7 C -0.157 4.157 8 C -0.176 4.176 9 C -0.163 4.163 10 C -0.123 4.123 11 C -0.137 4.137 12 H 0.132 0.868 13 C 0.406 3.594 14 F -0.156 7.156 15 F -0.178 7.178 16 F -0.169 7.169 17 C 0.285 3.715 18 O -0.465 6.465 19 N -0.334 5.334 20 C -0.069 4.069 21 C 0.101 3.899 22 C -0.574 4.574 23 H 0.048 0.952 24 C -0.185 4.185 25 N -0.584 5.584 26 Si 0.769 3.231 27 H -0.175 1.175 28 H -0.208 1.208 29 H -0.182 1.182 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.546 5.228 22.054 25.906 hybrid contribution 1.175 -0.339 -1.134 1.668 sum -11.371 4.889 20.920 24.308 Atomic orbital electron populations 1.22002 0.90658 1.02856 1.04253 1.21396 0.98571 0.96303 0.86740 0.89673 1.60680 1.35166 1.31359 1.03473 1.21712 0.98697 0.92873 0.88348 0.87791 1.21164 0.97131 0.99657 0.97772 1.22018 1.01138 1.00633 0.93774 1.22032 0.96922 0.98587 0.98739 1.20547 1.00152 0.94920 0.96656 1.22552 0.94938 0.97573 0.98687 0.86803 1.20526 0.85939 0.80047 0.72928 1.93267 1.96195 1.70432 1.55706 1.93143 1.96808 1.79702 1.48099 1.93117 1.54673 1.73633 1.95494 1.21266 0.79785 0.84714 0.85727 1.90626 1.40170 1.28982 1.86755 1.47853 1.50168 1.29721 1.05649 1.22181 0.94391 0.86487 1.03841 1.19329 0.93620 0.92876 0.84050 1.21535 1.05284 1.18965 1.11579 0.95185 1.25815 0.95039 0.99275 0.98397 1.70043 1.16770 1.44218 1.27418 0.85733 0.78816 0.79300 0.79252 1.17451 1.20797 1.18218 0.89125 0.93355 0.90041 0.82971 0.91074 0.90616 0.86509 0.85048 0.88744 0.88210 0.89762 0.89198 0.91407 0.96410 0.93338 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.03 71.98 0.65 -2.46 16 2 C 0.08 2.28 2.04 44.17 0.09 2.37 16 3 H 0.09 2.04 6.59 -2.39 -0.02 2.02 16 4 N -0.67 -18.01 3.74 -472.59 -1.77 -19.78 16 5 C 0.09 1.81 1.64 45.05 0.07 1.89 16 6 H 0.10 1.81 7.00 -2.39 -0.02 1.80 16 7 C -0.12 -2.20 5.42 29.66 0.16 -2.04 16 8 C -0.16 -2.27 9.80 27.04 0.27 -2.00 16 9 C -0.14 -1.71 9.80 27.04 0.27 -1.45 16 10 C -0.09 -1.06 5.20 29.66 0.15 -0.90 16 11 C -0.12 -2.05 2.07 -10.66 -0.02 -2.08 16 12 H 0.11 2.02 8.13 -2.39 -0.02 2.00 16 13 C 0.46 9.95 2.67 71.98 0.19 10.14 16 14 F -0.17 -4.95 15.20 44.97 0.68 -4.27 16 15 F -0.20 -4.22 17.04 44.97 0.77 -3.46 16 16 F -0.19 -3.97 16.23 44.97 0.73 -3.24 16 17 C 0.50 19.85 7.10 87.66 0.62 20.47 16 18 O -0.59 -29.18 15.22 -3.03 -0.05 -29.23 16 19 N -0.60 -24.01 2.86 -851.11 -2.43 -26.44 16 20 C 0.07 1.98 8.80 127.77 1.12 3.11 16 21 C 0.22 10.90 4.23 85.63 0.36 11.26 16 22 C -0.54 -31.32 9.94 25.60 0.25 -31.06 16 23 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 24 C 0.01 0.76 5.47 84.65 0.46 1.22 16 25 N -0.94 -59.43 13.96 21.44 0.30 -59.14 16 26 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 27 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 28 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 29 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 30 H 0.09 1.68 4.51 -2.39 -0.01 1.67 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.47 7.44 -2.39 -0.02 1.46 16 33 H 0.35 11.09 7.03 -89.69 -0.63 10.46 16 34 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 35 H 0.08 1.47 7.68 -2.39 -0.02 1.45 16 36 H 0.12 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.13 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.09 1.08 7.49 -2.39 -0.02 1.06 16 39 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 40 H 0.08 1.76 6.95 -2.39 -0.02 1.74 16 41 H 0.09 1.92 6.01 -2.39 -0.01 1.91 16 42 H 0.07 1.97 8.07 -2.38 -0.02 1.95 16 43 H 0.02 0.95 6.47 -2.39 -0.02 0.94 16 44 H 0.05 2.14 7.50 -2.39 -0.02 2.12 16 45 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -75.78 363.19 5.11 -70.67 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.34 Total: 19.98 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 4.66 Total: 8.47 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -3.90 Total: -105.36 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 2.18 Total: -10.96 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -75.78 5.11 -70.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879666536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.944 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds