Wall clock time and date at job start Tue Mar 31 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47669 * 2 1 4 4 N 1.46898 * 109.46794 * 240.00051 * 2 1 3 5 5 C 1.46893 * 111.00233 * 85.40475 * 4 2 1 6 6 H 1.08999 * 109.64001 * 346.32384 * 5 4 2 7 7 C 1.53023 * 109.64884 * 225.90298 * 5 4 2 8 8 C 1.50060 * 110.15178 * 190.88099 * 7 5 4 9 9 C 1.29441 * 124.07690 * 17.12437 * 8 7 5 10 10 C 1.50070 * 124.07400 * 359.56320 * 9 8 7 11 11 C 1.52940 * 110.30228 * 16.93914 * 10 9 8 12 12 H 1.09004 * 109.43875 * 70.52189 * 11 10 9 13 13 C 1.53001 * 109.80158 * 191.12002 * 11 10 9 14 14 F 1.39906 * 109.47153 * 184.57791 * 13 11 10 15 15 F 1.39898 * 109.47493 * 304.57655 * 13 11 10 16 16 F 1.39900 * 109.47224 * 64.57948 * 13 11 10 17 17 C 1.50700 * 109.46979 * 120.00437 * 2 1 3 18 18 O 1.21283 * 120.00006 * 119.99785 * 17 2 1 19 19 N 1.34773 * 120.00104 * 300.26777 * 17 2 1 20 20 C 1.46503 * 119.99638 * 359.72858 * 19 17 2 21 21 C 1.46498 * 120.00463 * 179.72535 * 19 17 2 22 22 C 1.50705 * 109.46865 * 89.99848 * 21 19 17 23 23 H 1.08000 * 119.99998 * 0.02562 * 22 21 19 24 24 C 1.37875 * 119.99728 * 180.02562 * 22 21 19 25 25 N 1.31514 * 120.00373 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99805 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47183 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46878 * 119.99946 * 26 24 22 29 29 H 1.48499 * 109.47384 * 240.00132 * 26 24 22 30 30 H 1.08998 * 109.46872 * 55.97675 * 1 2 3 31 31 H 1.08992 * 109.47491 * 175.98872 * 1 2 3 32 32 H 1.09004 * 109.46608 * 295.98459 * 1 2 3 33 33 H 1.00902 * 111.00578 * 209.36051 * 4 2 1 34 34 H 1.09000 * 109.35666 * 311.09021 * 7 5 4 35 35 H 1.09003 * 109.35641 * 70.80441 * 7 5 4 36 36 H 1.08009 * 117.96251 * 197.15452 * 8 7 5 37 37 H 1.08005 * 117.96479 * 179.53177 * 9 8 7 38 38 H 1.09001 * 109.36150 * 137.31582 * 10 9 8 39 39 H 1.09010 * 109.35314 * 257.03167 * 10 9 8 40 40 H 1.09007 * 109.47186 * 90.00534 * 20 19 17 41 41 H 1.09002 * 109.46958 * 209.99536 * 20 19 17 42 42 H 1.08997 * 109.47456 * 329.99785 * 20 19 17 43 43 H 1.08994 * 109.47457 * 210.00095 * 21 19 17 44 44 H 1.08999 * 109.46836 * 330.00254 * 21 19 17 45 45 H 0.97002 * 120.00521 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0915 0.2248 -2.3445 6 1 1.5440 1.1393 -2.1163 7 6 1.4832 -0.4444 -3.5789 8 6 1.7844 0.3642 -4.8066 9 6 2.7059 1.2712 -4.8696 10 6 3.5954 1.6473 -3.7210 11 6 3.5576 0.5627 -2.6433 12 1 4.0722 -0.3271 -3.0060 13 6 4.2375 1.0725 -1.3710 14 9 4.2921 0.0418 -0.4265 15 9 5.5358 1.4966 -1.6738 16 9 3.5064 2.1450 -0.8491 17 6 2.0323 -0.7105 1.2304 18 8 2.7296 -1.6966 1.1191 19 7 1.7023 -0.2533 2.4545 20 6 0.8601 0.9379 2.5890 21 6 2.1856 -0.9475 3.6507 22 6 3.5119 -0.3658 4.0675 23 1 3.9507 0.4406 3.4986 24 6 4.1651 -0.8631 5.1752 25 7 3.6311 -1.8454 5.8677 26 14 5.8088 -0.1417 5.6923 27 1 6.1893 0.9452 4.7547 28 1 5.6974 0.4079 7.0675 29 1 6.8459 -1.2041 5.6663 30 1 -0.3633 0.5750 -0.8517 31 1 -0.3634 -1.0250 -0.0719 32 1 -0.3633 0.4503 0.9238 33 1 2.9142 -1.1262 -1.0269 34 1 1.9037 -1.4436 -3.6922 35 1 0.4029 -0.5191 -3.4539 36 1 1.1954 0.1783 -5.6926 37 1 2.8434 1.7891 -5.8074 38 1 4.6178 1.7662 -4.0797 39 1 3.2517 2.5881 -3.2909 40 1 -0.1882 0.6404 2.6175 41 1 1.1146 1.4606 3.5110 42 1 1.0272 1.5989 1.7386 43 1 1.4646 -0.8240 4.4587 44 1 2.3070 -2.0082 3.4310 45 1 4.0908 -2.1955 6.6468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879666537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:27 Heat of formation + Delta-G solvation = -160.391452 kcal Electronic energy + Delta-G solvation = -31723.990153 eV Core-core repulsion = 27134.150494 eV Total energy + Delta-G solvation = -4589.839659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.20265 -47.66614 -47.61973 -39.78773 -38.77206 -35.30959 -34.80944 -32.71936 -32.15658 -31.12778 -28.43642 -27.38414 -26.10152 -25.86534 -23.91869 -22.91048 -22.08548 -21.32267 -19.12698 -18.61513 -18.38968 -17.80945 -17.64478 -16.61552 -16.38408 -15.91089 -15.65129 -15.15802 -14.73482 -14.54561 -14.45333 -14.24445 -14.04638 -13.94921 -13.83460 -13.73345 -13.61218 -13.41057 -13.31655 -13.00918 -12.64567 -12.53500 -12.29661 -12.18358 -12.08389 -11.79653 -11.56879 -11.33467 -11.24560 -11.11281 -10.95047 -10.86405 -10.73079 -10.55914 -10.13498 -9.57727 -9.32463 -8.79538 -8.46200 -8.40970 -7.60534 -6.01853 -4.06166 1.95801 2.64448 3.31222 3.38460 3.41902 3.46994 3.63106 3.67634 3.75404 3.94406 4.26447 4.44978 4.47573 4.54790 4.73742 4.82484 4.95413 5.03335 5.05787 5.12153 5.31184 5.33613 5.34883 5.42220 5.47102 5.61917 5.65440 5.73684 5.77624 5.85947 5.90814 5.99666 6.18480 6.27123 6.39890 6.60013 6.88076 7.12628 7.42881 7.48880 7.58016 7.94920 8.26365 8.44629 8.93065 9.11963 9.58872 11.06203 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.004112 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.369941 B = 6807.719804 C = 7815.077464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.674 5.674 5 C 0.094 3.906 6 H 0.086 0.914 7 C -0.075 4.075 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.083 4.083 11 C -0.162 4.162 12 H 0.121 0.879 13 C 0.446 3.554 14 F -0.161 7.161 15 F -0.183 7.183 16 F -0.182 7.182 17 C 0.507 3.493 18 O -0.530 6.530 19 N -0.600 5.600 20 C 0.081 3.919 21 C 0.246 3.754 22 C -0.524 4.524 23 H 0.056 0.944 24 C 0.061 3.939 25 N -0.895 5.895 26 Si 0.896 3.104 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.366 0.634 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 8.706 -21.314 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.086 0.914 4 N -0.313 5.313 5 C -0.017 4.017 6 H 0.104 0.896 7 C -0.113 4.113 8 C -0.165 4.165 9 C -0.177 4.177 10 C -0.121 4.121 11 C -0.183 4.183 12 H 0.139 0.861 13 C 0.391 3.609 14 F -0.142 7.142 15 F -0.165 7.165 16 F -0.163 7.163 17 C 0.293 3.707 18 O -0.407 6.407 19 N -0.332 5.332 20 C -0.063 4.063 21 C 0.127 3.873 22 C -0.563 4.563 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.724 3.276 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.194 0.806 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.990 7.795 -21.281 23.441 hybrid contribution 1.902 1.115 0.812 2.350 sum -4.088 8.910 -20.468 22.695 Atomic orbital electron populations 1.22008 0.92781 1.03263 1.02359 1.21654 0.97365 0.96846 0.89676 0.91387 1.60496 1.37350 1.30411 1.03080 1.21759 0.90872 0.96201 0.92839 0.89616 1.20441 1.01912 0.98984 0.89966 1.22201 0.98023 0.97276 0.98982 1.21835 0.97496 0.99885 0.98507 1.20423 1.01021 0.97264 0.93389 1.23285 1.00368 1.02591 0.92090 0.86070 1.20701 0.77247 0.76065 0.86856 1.93258 1.95886 1.57631 1.67472 1.93172 1.39699 1.90499 1.93103 1.93133 1.77009 1.57715 1.88472 1.20149 0.80983 0.85219 0.84380 1.90647 1.37777 1.26453 1.85811 1.48059 1.49750 1.28143 1.07245 1.21802 0.93843 0.88189 1.02456 1.19288 0.94222 0.93669 0.80115 1.21466 1.04925 1.18813 1.11063 0.92544 1.24920 0.97865 0.94967 0.96307 1.69941 1.38953 1.25963 1.18522 0.86473 0.83872 0.79086 0.78186 1.19867 1.20943 1.20842 0.92474 0.91460 0.90780 0.80560 0.89627 0.89644 0.87260 0.87162 0.89581 0.89710 0.93238 0.90838 0.92493 0.94984 0.93782 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.05 37.16 0.34 -1.54 16 2 C 0.06 0.91 1.00 -68.86 -0.07 0.84 16 3 H 0.07 1.05 4.66 -51.93 -0.24 0.81 16 4 N -0.67 -9.74 5.76 -100.73 -0.58 -10.32 16 5 C 0.09 1.02 1.82 -67.50 -0.12 0.90 16 6 H 0.09 0.91 7.04 -51.93 -0.37 0.55 16 7 C -0.08 -0.66 5.74 -28.18 -0.16 -0.83 16 8 C -0.15 -1.08 9.80 -35.90 -0.35 -1.43 16 9 C -0.16 -1.15 9.81 -35.90 -0.35 -1.50 16 10 C -0.08 -0.69 5.12 -28.22 -0.14 -0.83 16 11 C -0.16 -1.70 1.83 -90.45 -0.17 -1.87 16 12 H 0.12 1.20 8.13 -51.93 -0.42 0.78 16 13 C 0.45 6.17 2.38 37.16 0.09 6.26 16 14 F -0.16 -2.89 12.31 2.25 0.03 -2.86 16 15 F -0.18 -2.54 16.85 2.25 0.04 -2.50 16 16 F -0.18 -2.57 14.27 2.25 0.03 -2.54 16 17 C 0.51 10.82 6.38 -10.99 -0.07 10.75 16 18 O -0.53 -13.45 14.69 5.56 0.08 -13.37 16 19 N -0.60 -13.05 2.86 -182.95 -0.52 -13.58 16 20 C 0.08 1.33 8.80 59.85 0.53 1.85 16 21 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 22 C -0.52 -15.21 9.39 -34.44 -0.32 -15.53 16 23 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 24 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 26 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 27 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 30 H 0.06 0.60 7.98 -51.93 -0.41 0.18 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.90 4.44 -51.93 -0.23 0.67 16 33 H 0.37 6.13 4.69 -39.29 -0.18 5.94 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.11 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 39 H 0.08 0.70 7.66 -51.92 -0.40 0.30 16 40 H 0.05 0.68 6.86 -51.93 -0.36 0.33 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.06 0.80 6.06 -51.93 -0.31 0.48 16 43 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -33.46 358.41 -6.97 -40.43 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.23 Total: 2.90 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.93 Total: 5.30 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.37 Total: -50.15 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.10 Total: -7.89 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.46 -6.97 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879666537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.960 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds