Wall clock time and date at job start Tue Mar 31 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47669 * 2 1 4 4 N 1.46898 * 109.46794 * 240.00051 * 2 1 3 5 5 C 1.46893 * 111.00233 * 85.40475 * 4 2 1 6 6 H 1.08999 * 109.64001 * 346.32384 * 5 4 2 7 7 C 1.53023 * 109.64884 * 225.90298 * 5 4 2 8 8 C 1.50060 * 110.15178 * 190.88099 * 7 5 4 9 9 C 1.29441 * 124.07690 * 17.12437 * 8 7 5 10 10 C 1.50070 * 124.07400 * 359.56320 * 9 8 7 11 11 C 1.52940 * 110.30228 * 16.93914 * 10 9 8 12 12 H 1.09004 * 109.43875 * 70.52189 * 11 10 9 13 13 C 1.53001 * 109.80158 * 191.12002 * 11 10 9 14 14 F 1.39906 * 109.47153 * 184.57791 * 13 11 10 15 15 F 1.39898 * 109.47493 * 304.57655 * 13 11 10 16 16 F 1.39900 * 109.47224 * 64.57948 * 13 11 10 17 17 C 1.50700 * 109.46979 * 120.00437 * 2 1 3 18 18 O 1.21283 * 120.00006 * 119.99785 * 17 2 1 19 19 N 1.34773 * 120.00104 * 300.26777 * 17 2 1 20 20 C 1.46503 * 119.99638 * 359.72858 * 19 17 2 21 21 C 1.46498 * 120.00463 * 179.72535 * 19 17 2 22 22 C 1.50705 * 109.46865 * 89.99848 * 21 19 17 23 23 H 1.08000 * 119.99998 * 0.02562 * 22 21 19 24 24 C 1.37875 * 119.99728 * 180.02562 * 22 21 19 25 25 N 1.31514 * 120.00373 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99805 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47183 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46878 * 119.99946 * 26 24 22 29 29 H 1.48499 * 109.47384 * 240.00132 * 26 24 22 30 30 H 1.08998 * 109.46872 * 55.97675 * 1 2 3 31 31 H 1.08992 * 109.47491 * 175.98872 * 1 2 3 32 32 H 1.09004 * 109.46608 * 295.98459 * 1 2 3 33 33 H 1.00902 * 111.00578 * 209.36051 * 4 2 1 34 34 H 1.09000 * 109.35666 * 311.09021 * 7 5 4 35 35 H 1.09003 * 109.35641 * 70.80441 * 7 5 4 36 36 H 1.08009 * 117.96251 * 197.15452 * 8 7 5 37 37 H 1.08005 * 117.96479 * 179.53177 * 9 8 7 38 38 H 1.09001 * 109.36150 * 137.31582 * 10 9 8 39 39 H 1.09010 * 109.35314 * 257.03167 * 10 9 8 40 40 H 1.09007 * 109.47186 * 90.00534 * 20 19 17 41 41 H 1.09002 * 109.46958 * 209.99536 * 20 19 17 42 42 H 1.08997 * 109.47456 * 329.99785 * 20 19 17 43 43 H 1.08994 * 109.47457 * 210.00095 * 21 19 17 44 44 H 1.08999 * 109.46836 * 330.00254 * 21 19 17 45 45 H 0.97002 * 120.00521 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0915 0.2248 -2.3445 6 1 1.5440 1.1393 -2.1163 7 6 1.4832 -0.4444 -3.5789 8 6 1.7844 0.3642 -4.8066 9 6 2.7059 1.2712 -4.8696 10 6 3.5954 1.6473 -3.7210 11 6 3.5576 0.5627 -2.6433 12 1 4.0722 -0.3271 -3.0060 13 6 4.2375 1.0725 -1.3710 14 9 4.2921 0.0418 -0.4265 15 9 5.5358 1.4966 -1.6738 16 9 3.5064 2.1450 -0.8491 17 6 2.0323 -0.7105 1.2304 18 8 2.7296 -1.6966 1.1191 19 7 1.7023 -0.2533 2.4545 20 6 0.8601 0.9379 2.5890 21 6 2.1856 -0.9475 3.6507 22 6 3.5119 -0.3658 4.0675 23 1 3.9507 0.4406 3.4986 24 6 4.1651 -0.8631 5.1752 25 7 3.6311 -1.8454 5.8677 26 14 5.8088 -0.1417 5.6923 27 1 6.1893 0.9452 4.7547 28 1 5.6974 0.4079 7.0675 29 1 6.8459 -1.2041 5.6663 30 1 -0.3633 0.5750 -0.8517 31 1 -0.3634 -1.0250 -0.0719 32 1 -0.3633 0.4503 0.9238 33 1 2.9142 -1.1262 -1.0269 34 1 1.9037 -1.4436 -3.6922 35 1 0.4029 -0.5191 -3.4539 36 1 1.1954 0.1783 -5.6926 37 1 2.8434 1.7891 -5.8074 38 1 4.6178 1.7662 -4.0797 39 1 3.2517 2.5881 -3.2909 40 1 -0.1882 0.6404 2.6175 41 1 1.1146 1.4606 3.5110 42 1 1.0272 1.5989 1.7386 43 1 1.4646 -0.8240 4.4587 44 1 2.3070 -2.0082 3.4310 45 1 4.0908 -2.1955 6.6468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879666537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:26 Heat of formation + Delta-G solvation = -182.466693 kcal Electronic energy + Delta-G solvation = -31724.947407 eV Core-core repulsion = 27134.150494 eV Total energy + Delta-G solvation = -4590.796913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.34766 -48.83923 -48.77083 -41.11252 -39.87672 -36.73311 -36.31127 -34.77345 -33.01942 -32.15563 -29.86584 -28.84807 -27.57670 -26.82289 -25.65780 -23.94504 -23.33477 -22.43360 -20.33632 -19.85777 -19.51586 -18.90095 -18.70935 -18.58322 -17.79896 -17.35094 -16.72501 -16.54316 -16.44151 -15.74381 -15.64375 -15.44119 -15.27441 -15.16104 -14.93700 -14.91859 -14.68113 -14.54924 -14.37248 -14.23284 -13.95491 -13.78266 -13.56739 -13.48759 -13.32297 -13.10506 -12.95530 -12.88069 -12.71632 -12.59961 -12.32047 -12.19246 -12.09671 -11.87128 -11.69582 -11.51765 -10.67512 -10.48502 -9.88418 -9.55084 -9.41643 -8.25248 -6.39784 1.31711 1.34301 1.42655 1.45825 1.62712 1.82067 2.23042 2.38919 2.63540 2.77498 2.84021 3.03798 3.11110 3.53028 3.64064 3.77288 3.92059 4.05009 4.12975 4.16689 4.30401 4.34644 4.38693 4.45301 4.61043 4.71281 4.77591 4.78701 4.86488 4.92524 4.99123 5.01600 5.14433 5.17097 5.21665 5.33372 5.53148 5.74256 5.79608 5.91886 6.03953 6.04634 6.21244 6.67063 6.77035 7.25431 7.45628 8.81844 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.004112 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.369941 B = 6807.719804 C = 7815.077464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.075 0.925 4 N -0.681 5.681 5 C 0.093 3.907 6 H 0.094 0.906 7 C -0.071 4.071 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.081 4.081 11 C -0.153 4.153 12 H 0.125 0.875 13 C 0.437 3.563 14 F -0.190 7.190 15 F -0.186 7.186 16 F -0.184 7.184 17 C 0.496 3.504 18 O -0.582 6.582 19 N -0.609 5.609 20 C 0.075 3.925 21 C 0.262 3.738 22 C -0.541 4.541 23 H 0.046 0.954 24 C 0.010 3.990 25 N -0.926 5.926 26 Si 0.964 3.036 27 H -0.272 1.272 28 H -0.265 1.265 29 H -0.280 1.280 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.352 0.648 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.026 0.974 44 H -0.002 1.002 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 10.858 -23.358 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 H 0.093 0.907 4 N -0.319 5.319 5 C -0.017 4.017 6 H 0.112 0.888 7 C -0.108 4.108 8 C -0.166 4.166 9 C -0.176 4.176 10 C -0.119 4.119 11 C -0.174 4.174 12 H 0.143 0.857 13 C 0.383 3.617 14 F -0.172 7.172 15 F -0.167 7.167 16 F -0.166 7.166 17 C 0.284 3.716 18 O -0.462 6.462 19 N -0.340 5.340 20 C -0.067 4.067 21 C 0.140 3.860 22 C -0.580 4.580 23 H 0.065 0.935 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.788 3.212 27 H -0.197 1.197 28 H -0.190 1.190 29 H -0.206 1.206 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.739 9.994 -23.345 26.273 hybrid contribution 2.126 0.438 1.451 2.611 sum -4.613 10.432 -21.894 24.687 Atomic orbital electron populations 1.22019 0.90096 1.03354 1.04344 1.21628 0.99172 0.96005 0.87310 0.90713 1.60620 1.36551 1.31324 1.03391 1.21918 0.91341 0.96049 0.92349 0.88808 1.20403 1.02105 0.98750 0.89575 1.22247 0.98486 0.97074 0.98822 1.21946 0.96881 1.00019 0.98705 1.20477 1.02079 0.96348 0.92980 1.23326 0.99679 1.03495 0.90909 0.85746 1.21311 0.77475 0.75466 0.87457 1.93213 1.96044 1.58992 1.68903 1.93158 1.40052 1.90472 1.93020 1.93114 1.76982 1.57764 1.88712 1.21213 0.79937 0.84808 0.85636 1.90608 1.39964 1.28916 1.86700 1.48083 1.50384 1.29417 1.06137 1.22111 0.94557 0.86569 1.03436 1.18738 0.93669 0.91651 0.81908 1.21682 1.06100 1.18838 1.11365 0.93530 1.25804 1.01605 0.95240 0.96241 1.70045 1.40577 1.26933 1.18975 0.85427 0.79003 0.78265 0.78469 1.19694 1.18981 1.20577 0.89131 0.92552 0.89872 0.82191 0.90337 0.88896 0.85280 0.85071 0.88722 0.89447 0.90072 0.91510 0.89633 0.95611 0.98371 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.05 71.98 0.65 -2.62 16 2 C 0.07 2.20 1.00 44.17 0.04 2.25 16 3 H 0.08 2.19 4.66 -2.39 -0.01 2.18 16 4 N -0.68 -19.40 5.76 -472.60 -2.72 -22.12 16 5 C 0.09 1.86 1.82 45.06 0.08 1.94 16 6 H 0.09 1.73 7.04 -2.39 -0.02 1.71 16 7 C -0.07 -1.08 5.74 29.66 0.17 -0.91 16 8 C -0.15 -1.68 9.80 27.04 0.27 -1.41 16 9 C -0.16 -1.74 9.81 27.04 0.27 -1.47 16 10 C -0.08 -1.14 5.12 29.63 0.15 -0.99 16 11 C -0.15 -3.02 1.83 -10.68 -0.02 -3.04 16 12 H 0.12 2.37 8.13 -2.38 -0.02 2.35 16 13 C 0.44 11.96 2.38 71.98 0.17 12.13 16 14 F -0.19 -7.04 12.31 44.97 0.55 -6.48 16 15 F -0.19 -5.08 16.85 44.97 0.76 -4.32 16 16 F -0.18 -5.02 14.27 44.97 0.64 -4.38 16 17 C 0.50 21.71 6.38 87.66 0.56 22.27 16 18 O -0.58 -31.14 14.69 -3.04 -0.04 -31.19 16 19 N -0.61 -27.06 2.86 -851.13 -2.43 -29.49 16 20 C 0.08 2.37 8.80 127.77 1.12 3.49 16 21 C 0.26 14.64 5.16 85.64 0.44 15.08 16 22 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 23 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 24 C 0.01 0.61 5.46 84.65 0.46 1.07 16 25 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 26 Si 0.96 46.49 29.54 68.60 2.03 48.52 16 27 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 29 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 30 H 0.09 1.53 7.98 -2.39 -0.02 1.52 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.77 4.44 -2.39 -0.01 1.76 16 33 H 0.35 12.13 4.69 -89.69 -0.42 11.71 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.09 1.18 8.04 -2.39 -0.02 1.16 16 39 H 0.09 1.20 7.66 -2.38 -0.02 1.19 16 40 H 0.08 2.05 6.86 -2.38 -0.02 2.04 16 41 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 42 H 0.09 2.19 6.06 -2.39 -0.01 2.18 16 43 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 44 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.47 358.41 4.27 -72.20 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.60 Total: 18.52 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 4.61 Total: 15.60 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.87 Total: -108.46 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.04 Total: -31.19 kcal Atomic # 9 Polarization: -17.14 SS G_CDS: 1.95 Total: -15.18 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.47 4.27 -72.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879666537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.270 kcal (2) G-P(sol) polarization free energy of solvation -76.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds