Wall clock time and date at job start Tue Mar 31 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47631 * 2 1 4 4 O 1.42906 * 109.46874 * 240.00529 * 2 1 3 5 5 C 1.42895 * 114.00237 * 90.00043 * 4 2 1 6 6 C 1.53002 * 109.47297 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.48006 * 54.97704 * 6 5 4 8 8 C 1.53089 * 109.47979 * 174.99972 * 6 5 4 9 9 C 1.53181 * 109.16213 * 177.58995 * 8 6 5 10 10 C 1.53177 * 109.03588 * 303.02047 * 9 8 6 11 11 C 1.53088 * 109.16341 * 56.97939 * 10 9 8 12 12 O 1.42903 * 109.47627 * 294.93872 * 6 5 4 13 13 C 1.50695 * 109.47418 * 120.00523 * 2 1 3 14 14 O 1.21270 * 120.00130 * 114.99320 * 13 2 1 15 15 N 1.34773 * 119.99690 * 294.99876 * 13 2 1 16 16 C 1.39274 * 120.00118 * 185.13212 * 15 13 2 17 17 C 1.39673 * 119.57638 * 174.62636 * 16 15 13 18 18 C 1.38655 * 119.49151 * 180.02562 * 17 16 15 19 19 C 1.38347 * 118.67518 * 0.02562 * 18 17 16 20 20 C 1.40579 * 119.12538 * 359.97438 * 19 18 17 21 21 C 1.41345 * 119.78713 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99781 * 359.97438 * 21 20 19 23 23 C 1.40022 * 120.00044 * 179.97438 * 21 20 19 24 24 N 1.30740 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47447 * 90.00036 * 25 23 21 27 27 H 1.48507 * 109.47031 * 209.99948 * 25 23 21 28 28 H 1.48502 * 109.47175 * 329.99634 * 25 23 21 29 29 N 1.31904 * 119.57273 * 354.61000 * 16 15 13 30 30 H 1.09000 * 109.46908 * 300.00042 * 1 2 3 31 31 H 1.09004 * 109.46962 * 59.99526 * 1 2 3 32 32 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47406 * 300.00244 * 5 4 2 34 34 H 1.09008 * 109.47135 * 59.99836 * 5 4 2 35 35 H 1.08998 * 109.52592 * 297.49872 * 8 6 5 36 36 H 1.08999 * 109.52415 * 57.62506 * 8 6 5 37 37 H 1.08994 * 109.54332 * 62.88688 * 9 8 6 38 38 H 1.09003 * 109.54220 * 183.06382 * 9 8 6 39 39 H 1.08995 * 109.52290 * 176.88873 * 10 9 8 40 40 H 1.09010 * 109.52229 * 297.01084 * 10 9 8 41 41 H 1.08990 * 109.48188 * 62.37448 * 11 10 9 42 42 H 1.09005 * 109.48103 * 182.41308 * 11 10 9 43 43 H 0.96998 * 120.00459 * 5.13439 * 15 13 2 44 44 H 1.07995 * 120.24944 * 359.97438 * 17 16 15 45 45 H 1.08002 * 120.66011 * 179.97438 * 18 17 16 46 46 H 1.07997 * 120.44109 * 180.02562 * 19 18 17 47 47 H 0.97003 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6406 -3.4793 7 1 2.0193 -1.4635 -3.6717 8 6 2.7966 0.2515 -4.7203 9 6 3.3623 -0.5645 -5.8867 10 6 4.7249 -1.1356 -5.4825 11 6 4.5616 -1.9741 -4.2121 12 8 4.0028 -1.1633 -3.1764 13 6 2.0324 -0.7105 1.2303 14 8 2.6529 -1.7467 1.1213 15 7 1.7920 -0.1943 2.4519 16 6 2.3461 -0.7914 3.5815 17 6 2.1853 -0.1864 4.8301 18 6 2.7381 -0.7820 5.9536 19 6 3.4375 -1.9659 5.8010 20 6 3.5644 -2.5251 4.5175 21 6 4.2755 -3.7345 4.3457 22 1 4.7196 -4.2257 5.1989 23 6 4.4042 -4.2958 3.0693 24 7 3.8662 -3.7015 2.0366 25 14 5.3434 -5.8944 2.8424 26 1 4.4099 -7.0409 2.9809 27 1 5.9602 -5.9187 1.4917 28 1 6.4068 -5.9945 3.8741 29 7 3.0157 -1.9212 3.4586 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2537 0.6549 -2.5589 34 1 2.9320 0.9514 -2.0450 35 1 1.8024 0.6158 -4.9789 36 1 3.4524 1.0974 -4.5146 37 1 2.6808 -1.3812 -6.1247 38 1 3.4792 0.0787 -6.7589 39 1 5.1098 -1.7632 -6.2862 40 1 5.4209 -0.3182 -5.2935 41 1 3.8976 -2.8144 -4.4141 42 1 5.5354 -2.3479 -3.8955 43 1 1.2330 0.5930 2.5443 44 1 1.6353 0.7387 4.9196 45 1 2.6257 -0.3303 6.9281 46 1 3.8795 -2.4545 6.6567 47 1 3.9556 -4.0901 1.1523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882478222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:18 Heat of formation + Delta-G solvation = -75.121186 kcal Electronic energy + Delta-G solvation = -29305.445677 eV Core-core repulsion = 25261.160355 eV Total energy + Delta-G solvation = -4044.285322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.70598 -39.27146 -37.93899 -36.71398 -34.00710 -33.74378 -32.97771 -32.48544 -30.91898 -30.21184 -28.75857 -27.09074 -25.52827 -24.43070 -23.89708 -22.24814 -21.71940 -21.07288 -20.41952 -19.20377 -17.77031 -16.86742 -16.56588 -16.47515 -15.95990 -15.71846 -14.93494 -14.76908 -14.68958 -14.52986 -14.37501 -14.03309 -13.83905 -13.51102 -13.30591 -12.82897 -12.78987 -12.70698 -12.44041 -12.32752 -12.06678 -11.85146 -11.71675 -11.45117 -11.28211 -11.13850 -11.02813 -10.88537 -10.77012 -10.58749 -10.40223 -10.37995 -9.86530 -9.65439 -9.57149 -9.47406 -8.94419 -8.69569 -7.90175 -7.11857 -6.89855 -6.05128 -4.32819 2.85194 3.13989 3.23605 3.26201 3.31388 3.32874 3.71695 3.80956 4.13459 4.15670 4.57095 4.61553 4.68580 4.86526 4.96064 4.99328 5.02168 5.16840 5.20523 5.24786 5.28090 5.36818 5.42062 5.54996 5.57911 5.61129 5.66714 5.71350 5.80068 5.81885 5.91738 6.06611 6.10843 6.16954 6.19851 6.54210 6.73275 6.88873 6.90855 7.21216 7.31474 7.32500 7.62554 7.70179 7.87093 8.13304 8.27639 8.53227 8.82411 9.12053 9.36917 10.32119 10.57102 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.003583 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.208849 B = 7813.092282 C = 9929.943240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.071 3.929 3 H 0.075 0.925 4 O -0.343 6.343 5 C 0.068 3.932 6 C 0.094 3.906 7 H 0.066 0.934 8 C -0.148 4.148 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.361 6.361 13 C 0.467 3.533 14 O -0.381 6.381 15 N -0.666 5.666 16 C 0.375 3.625 17 C -0.359 4.359 18 C -0.036 4.036 19 C -0.307 4.307 20 C 0.270 3.730 21 C -0.424 4.424 22 H 0.082 0.918 23 C 0.056 3.944 24 N -0.651 5.651 25 Si 0.895 3.105 26 H -0.272 1.272 27 H -0.278 1.278 28 H -0.264 1.264 29 N -0.475 5.475 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.397 0.603 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 9.051 -15.543 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 H 0.093 0.907 4 O -0.261 6.261 5 C -0.009 4.009 6 C 0.036 3.964 7 H 0.084 0.916 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.017 4.017 12 O -0.280 6.280 13 C 0.247 3.753 14 O -0.241 6.241 15 N -0.315 5.315 16 C 0.136 3.864 17 C -0.385 4.385 18 C -0.061 4.061 19 C -0.330 4.330 20 C 0.145 3.855 21 C -0.455 4.455 22 H 0.100 0.900 23 C -0.173 4.173 24 N -0.269 5.269 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.188 1.188 29 N -0.194 5.194 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.033 7.651 -16.633 18.747 hybrid contribution -0.243 0.523 0.477 0.748 sum -4.276 8.173 -16.156 18.604 Atomic orbital electron populations 1.22216 0.94474 1.03666 1.02220 1.21967 0.94309 0.96036 0.86748 0.90679 1.88136 1.86453 1.33031 1.18446 1.22551 0.98877 0.92962 0.86522 1.22021 0.86058 0.95765 0.92584 0.91627 1.22144 1.02094 0.99210 0.95171 1.21558 0.96835 0.99740 0.97654 1.22225 0.97786 1.00897 0.98643 1.22564 0.99220 0.92502 0.87460 1.88113 1.31657 1.67564 1.40668 1.20398 0.83688 0.87680 0.83534 1.91170 1.31104 1.17757 1.84115 1.43347 1.51684 1.31399 1.05067 1.18593 0.92500 0.91555 0.83790 1.20462 1.19647 1.05579 0.92798 1.20548 0.95002 0.94553 0.95952 1.21608 1.12413 1.00705 0.98247 1.18388 0.89179 0.92013 0.85893 1.19584 1.27805 1.04097 0.93993 0.89997 1.26176 0.96255 0.98513 0.96368 1.70277 1.25443 1.32093 0.99110 0.86539 0.80398 0.82702 0.78463 1.19702 1.20273 1.18808 1.68705 1.13316 1.06519 1.30814 0.91215 0.92058 0.91087 0.92129 0.92556 0.90759 0.90822 0.91731 0.91431 0.90998 0.91068 0.93219 0.88772 0.77003 0.89160 0.88697 0.88628 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.47 37.16 0.35 -1.70 16 2 C 0.07 1.12 3.13 -27.89 -0.09 1.03 16 3 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 4 O -0.34 -5.99 9.49 -59.67 -0.57 -6.55 16 5 C 0.07 0.87 5.41 37.16 0.20 1.07 16 6 C 0.09 1.17 2.93 -26.68 -0.08 1.09 16 7 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.15 -1.32 5.42 -26.59 -0.14 -1.47 16 9 C -0.12 -0.97 6.03 -26.55 -0.16 -1.13 16 10 C -0.16 -1.42 6.14 -26.59 -0.16 -1.58 16 11 C 0.06 0.71 6.84 37.20 0.25 0.96 16 12 O -0.36 -5.61 10.37 -40.01 -0.41 -6.02 16 13 C 0.47 10.01 7.14 -10.99 -0.08 9.93 16 14 O -0.38 -10.33 12.28 -14.30 -0.18 -10.51 16 15 N -0.67 -13.51 5.35 -11.40 -0.06 -13.57 16 16 C 0.37 9.40 7.43 -154.97 -1.15 8.25 16 17 C -0.36 -8.24 9.96 -38.89 -0.39 -8.63 16 18 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 19 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 20 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 21 C -0.42 -12.04 9.14 -37.73 -0.34 -12.38 16 22 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 23 C 0.06 1.55 5.50 -17.35 -0.10 1.45 16 24 N -0.65 -18.92 9.00 55.55 0.50 -18.42 16 25 Si 0.89 20.00 29.56 -169.99 -5.02 14.97 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 29 N -0.47 -13.79 5.74 -10.25 -0.06 -13.85 16 30 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 31 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 34 H 0.06 0.71 8.09 -51.92 -0.42 0.29 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.40 6.09 8.31 -40.82 -0.34 5.75 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 46 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 47 H 0.28 7.62 8.29 -40.82 -0.34 7.28 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -36.04 383.57 -10.67 -46.71 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.43 Total: 6.86 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.22 Total: -5.39 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.38 Total: -45.85 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.16 Total: -23.09 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.04 -10.67 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882478222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.414 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds